Initial commit

added_tokens.json

@@ -0,0 +1 @@
+{"<|endoftext|>": 50257}

config.json

@@ -0,0 +1,38 @@
+{
+  "_name_or_path": "gpt2-large",
+  "activation_function": "gelu_new",
+  "architectures": [
+    "GPT2LMHeadModel"
+  ],
+  "attn_pdrop": 0.1,
+  "bos_token_id": 50256,
+  "embd_pdrop": 0.1,
+  "eos_token_id": 50256,
+  "initializer_range": 0.02,
+  "layer_norm_epsilon": 1e-05,
+  "model_type": "gpt2",
+  "n_ctx": 1024,
+  "n_embd": 1280,
+  "n_head": 20,
+  "n_inner": null,
+  "n_layer": 36,
+  "n_positions": 1024,
+  "reorder_and_upcast_attn": false,
+  "resid_pdrop": 0.1,
+  "scale_attn_by_inverse_layer_idx": false,
+  "scale_attn_weights": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "task_specific_params": {
+    "text-generation": {
+      "do_sample": true,
+      "max_length": 50
+    }
+  },
+  "transformers_version": "4.17.0.dev0",
+  "use_cache": true,
+  "vocab_size": 50257
+}

flax_model_to_pytorch.py

@@ -0,0 +1,27 @@
+from transformers import AutoModelForCausalLM, FlaxAutoModelForCausalLM, AutoTokenizer
+import torch
+import numpy as np
+import jax
+import jax.numpy as jnp
+
+def to_f32(t):
+    return jax.tree_map(lambda x: x.astype(jnp.float32) if x.dtype == jnp.bfloat16 else x, t)
+
+jax.config.update('jax_platform_name', 'cpu')
+MODEL_PATH = "./"
+model = FlaxAutoModelForCausalLM.from_pretrained(MODEL_PATH)
+model.params = to_f32(model.params)
+model.save_pretrained(MODEL_PATH)
+
+pt_model = AutoModelForCausalLM.from_pretrained(
+    MODEL_PATH, from_flax=True).to('cpu')
+
+input_ids = np.asarray(2 * [128 * [0]], dtype=np.int32)
+input_ids_pt = torch.tensor(input_ids)
+
+logits_pt = pt_model(input_ids_pt).logits
+print(logits_pt)
+logits_fx = model(input_ids).logits
+print(logits_fx)
+
+pt_model.save_pretrained(MODEL_PATH)

replace_token_script.py

@@ -0,0 +1,80 @@
+''''This script was used to replace the final index of tokenizer.json and vocab.json
+     with "<|endoftext|>" token. Also reassociate the corresponding merges'''
+
+import json
+
+tokenizer_path = 'tokenizer.json'
+model_config_path = 'config.json'
+vocab_path = 'vocab.json'
+
+with open(vocab_path, "r") as f:
+    vocab_data = json.load(f)
+
+with open(tokenizer_path, "r") as f:
+    tokenizer_data = json.load(f)
+
+with open(model_config_path, "r") as f:
+    model_config = json.load(f)
+
+model_vocab_size = model_config['vocab_size']
+tokenizer_vocab = tokenizer_data['model']['vocab']
+
+mergeslength = len(tokenizer_data['model']['merges'])
+
+#readjust added_tokens 'id' to model_vocab_size - 1
+tokenizer_data['added_tokens'][-1]['id'] = model_vocab_size - 1
+
+final_index = model_vocab_size - 1
+eos = '<|endoftext|>'
+
+#retrieve the key of final index
+old_key_final_index_tokenizer = list(tokenizer_data['model']['vocab'].keys())[final_index]
+old_key_final_index_vocab = list(vocab_data.keys())[final_index]
+old_key_final_index_vocab_min2 = list(vocab_data.keys())[final_index - 1]
+old_key_final_index_tokenizer_merges = tokenizer_data['model']['merges'][mergeslength - 1]
+
+print(f"old_key_final_index_tokenizer = {old_key_final_index_tokenizer}")
+print(f"old_key_final_index_vocab = {old_key_final_index_vocab}")
+print(f"old_key_final_index_vocab_min2 = {old_key_final_index_vocab_min2}")
+print(f"old_key_final_index_tokenizer_merges = {old_key_final_index_tokenizer_merges}")
+
+#replace old key with new key
+tokenizer_data['model']['vocab']['<|endoftext|>'] = tokenizer_data['model']['vocab'][old_key_final_index_tokenizer]
+vocab_data[eos] = vocab_data[old_key_final_index_vocab]
+
+#replace the final merges idx with vocab_data - 1
+tokenizer_data['model']['merges'] = tokenizer_data['model']['merges'][: mergeslength - 1]
+
+
+#delete old key
+del tokenizer_data['model']['vocab'][old_key_final_index_tokenizer]
+del vocab_data[old_key_final_index_vocab]
+
+#check updated key
+old_key_final_index_tokenizer = list(tokenizer_data['model']['vocab'].keys())[final_index]
+old_key_final_index_vocab = list(vocab_data.keys())[final_index]
+old_key_final_index_tokenizer_merges = tokenizer_data['model']['merges'][mergeslength - 2]
+
+print(len(tokenizer_data['model']['merges']))
+print()
+print(f"updated old_key_final_index_tokenizer = {old_key_final_index_tokenizer}")
+print(f"updated old_key_final_index_vocab = {old_key_final_index_vocab}")
+print(f"updated old_key_final_index_tokenizer_merges = {old_key_final_index_tokenizer_merges}")
+
+with open(tokenizer_path, "w")as f:
+    json.dump(tokenizer_data, f)
+
+with open(vocab_path, "w")as f:
+    json.dump(vocab_data, f)
+
+with open('merges.txt') as f:
+    lines = f.readlines()
+
+with open("merges.txt", "w") as f:
+    for i in range(len(lines) - 1):
+        f.write(lines[i])
+
+with open('merges.txt') as f:
+    newlines = f.readlines()
+
+print(f"newlines[len(newlines) - 1] = {newlines[len(newlines) - 1]}")

run_clm_flax.py

@@ -0,0 +1,892 @@
+#!/usr/bin/env python
+# coding=utf-8
+# Copyright 2021 The HuggingFace Team All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""
+Pre-training/Fine-tuning the library models for causal language modeling (GPT, GPT-2, CTRL, ...) on a text file or a dataset.
+
+Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
+https://huggingface.co/models?filter=text-generation
+"""
+# You can also adapt this script on your own causal language modeling task. Pointers for this are left as comments.
+
+import json
+import logging
+import math
+import os
+import sys
+import time
+import gc
+from dataclasses import asdict, dataclass, field
+from enum import Enum
+from itertools import chain
+from pathlib import Path
+from typing import Callable, Optional
+
+import datasets
+import numpy as np
+from datasets import Dataset, load_dataset, load_from_disk
+from tqdm import tqdm
+
+import jax
+import jax.numpy as jnp
+import optax
+import transformers
+from flax import jax_utils, traverse_util
+from flax.jax_utils import unreplicate
+from flax.training import train_state
+from flax.training.common_utils import get_metrics, onehot, shard, shard_prng_key
+from huggingface_hub import Repository
+from transformers import (
+    CONFIG_MAPPING,
+    FLAX_MODEL_FOR_CAUSAL_LM_MAPPING,
+    AutoConfig,
+    AutoTokenizer,
+    FlaxAutoModelForCausalLM,
+    HfArgumentParser,
+    is_tensorboard_available,
+    set_seed,
+)
+from transformers.file_utils import get_full_repo_name
+from transformers.testing_utils import CaptureLogger
+
+from distributed_shampoo import distributed_shampoo, GraftingType
+
+
+logger = logging.getLogger(__name__)
+
+MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_CAUSAL_LM_MAPPING.keys())
+MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
+
+
+@dataclass
+class TrainingArguments:
+    output_dir: str = field(
+        metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
+    )
+    overwrite_output_dir: bool = field(
+        default=False,
+        metadata={
+            "help": (
+                "Overwrite the content of the output directory. "
+                "Use this to continue training if output_dir points to a checkpoint directory."
+            )
+        },
+    )
+    do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
+    do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
+    per_device_train_batch_size: int = field(
+        default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
+    )
+    per_device_eval_batch_size: int = field(
+        default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
+    )
+    gradient_accumulation_steps: int = field(
+        default=1,
+        metadata={
+            "help": "Number of updates steps to accumulate before performing a backward/update pass."
+        },
+    )
+    learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
+    weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
+    adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
+    adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
+    adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
+    adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
+    distributed_shampoo: bool = field(
+        default=False, metadata={"help": "Use Distributed Shampoo optimizer instead of AdamW."},
+    )
+    quantize_shampoo: bool = field(
+        default=False, metadata={"help": "Quantize Distributed Shampoo optimizer."},
+    )
+    num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
+    warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
+    warmup_ratio: float = field(default=0.0, metadata={"help": "Linear warmup ratio of total train steps."})
+    cosine_decay: bool = field(
+        default=False, metadata={"help": "Whether or not to use cosine decay instead of the basic linear decay schedule."}
+    )
+    gradient_clipping: bool = field(
+        default=False, metadata={"help": "Whether or not to use gradient clipping."}
+    )
+    logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
+    save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
+    eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
+    seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
+    push_to_hub: bool = field(
+        default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
+    )
+    hub_model_id: str = field(
+        default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
+    )
+    hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
+
+    def __post_init__(self):
+        if self.output_dir is not None:
+            self.output_dir = os.path.expanduser(self.output_dir)
+
+    def to_dict(self):
+        """
+        Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
+        the token values by removing their value.
+        """
+        d = asdict(self)
+        for k, v in d.items():
+            if isinstance(v, Enum):
+                d[k] = v.value
+            if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
+                d[k] = [x.value for x in v]
+            if k.endswith("_token"):
+                d[k] = f"<{k.upper()}>"
+        return d
+
+
+@dataclass
+class ModelArguments:
+    """
+    Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
+    """
+
+    model_name_or_path: Optional[str] = field(
+        default=None,
+        metadata={
+            "help": "The model checkpoint for weights initialization."
+            "Don't set if you want to train a model from scratch."
+        },
+    )
+    model_type: Optional[str] = field(
+        default=None,
+        metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
+    )
+    config_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
+    )
+    tokenizer_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
+    )
+    cache_dir: Optional[str] = field(
+        default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
+    )
+    use_fast_tokenizer: bool = field(
+        default=True,
+        metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
+    )
+    dtype: Optional[str] = field(
+        default="float32",
+        metadata={
+            "help": "Floating-point format in which the model weights should be initialized and trained. Choose one of `[float32, float16, bfloat16]`."
+        },
+    )
+
+
+@dataclass
+class DataTrainingArguments:
+    """
+    Arguments pertaining to what data we are going to input our model for training and eval.
+    """
+
+    dataset_name: Optional[str] = field(
+        default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
+    )
+    dataset_config_name: Optional[str] = field(
+        default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
+    )
+    dataset_filepath: Optional[str] = field(
+        default=None, metadata={"help": "Filepath to locally saved HF Dataset (with 'dataset.save_to_disk' method) to use for training"}
+    )
+    train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
+    validation_file: Optional[str] = field(
+        default=None,
+        metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
+    )
+    max_train_samples: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "For debugging purposes or quicker training, truncate the number of training examples to this "
+            "value if set."
+        },
+    )
+    max_eval_samples: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "For debugging purposes or quicker training, truncate the number of evaluation examples to this "
+            "value if set."
+        },
+    )
+    overwrite_cache: bool = field(
+        default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
+    )
+    validation_split_percentage: Optional[int] = field(
+        default=5,
+        metadata={
+            "help": "The percentage of the train set used as validation set in case there's no validation split"
+        },
+    )
+    block_size: Optional[int] = field(
+        default=None,
+        metadata={
+            "help": "Optional input sequence length after tokenization. "
+            "The training dataset will be truncated in block of this size for training. "
+            "Default to the model max input length for single sentence inputs (take into account special tokens)."
+        },
+    )
+    overwrite_cache: bool = field(
+        default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
+    )
+    preprocessing_num_workers: Optional[int] = field(
+        default=None,
+        metadata={"help": "The number of processes to use for the preprocessing."},
+    )
+    keep_linebreaks: bool = field(
+        default=True, metadata={"help": "Whether to keep line breaks when using TXT files or not."}
+    )
+
+    def __post_init__(self):
+        if self.dataset_name is None and self.train_file is None and self.dataset_filepath is None and self.validation_file is None:
+            raise ValueError("Need either a dataset name or a training/validation file.")
+        else:
+            if self.train_file is not None:
+                extension = self.train_file.split(".")[-1]
+                assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
+            if self.validation_file is not None:
+                extension = self.validation_file.split(".")[-1]
+                assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
+
+
+class TrainState(train_state.TrainState):
+    dropout_rng: jnp.ndarray
+
+    def replicate(self):
+        return jax_utils.replicate(self).replace(dropout_rng=shard_prng_key(self.dropout_rng))
+
+
+def data_loader(rng: jax.random.PRNGKey, dataset: Dataset, batch_size: int, shuffle: bool = False):
+    """
+    Returns batches of size `batch_size` from truncated `dataset`, sharded over all local devices.
+    Shuffle batches if `shuffle` is `True`.
+    """
+    steps_per_epoch = len(dataset) // batch_size
+
+    if shuffle:
+        batch_idx = jax.random.permutation(rng, len(dataset))
+    else:
+        batch_idx = jnp.arange(len(dataset))
+
+    batch_idx = batch_idx[: steps_per_epoch * batch_size]  # Skip incomplete batch.
+    batch_idx = batch_idx.reshape((steps_per_epoch, batch_size))
+
+    for idx in batch_idx:
+        batch = dataset[idx]
+        batch = {k: np.array(v) for k, v in batch.items()}
+
+        yield batch
+
+
+def write_train_metric(summary_writer, train_metrics, train_time, step):
+    summary_writer.scalar("train_time", train_time, step)
+
+    train_metrics = get_metrics(train_metrics)
+    for key, vals in train_metrics.items():
+        tag = f"train_{key}"
+        for i, val in enumerate(vals):
+            summary_writer.scalar(tag, val, step - len(vals) + i + 1)
+
+
+def write_eval_metric(summary_writer, eval_metrics, step):
+    for metric_name, value in eval_metrics.items():
+        summary_writer.scalar(f"eval_{metric_name}", value, step)
+
+
+def create_linear_learning_rate_fn(
+    train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
+) -> Callable[[int], jnp.array]:
+    """Returns a linear warmup, linear decay learning rate function."""
+    steps_per_epoch = train_ds_size // train_batch_size
+    num_train_steps = steps_per_epoch * num_train_epochs
+    warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
+    decay_fn = optax.linear_schedule(
+        init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
+    )
+    schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
+    return schedule_fn
+
+def create_cosine_learning_rate_fn(
+    train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
+) -> Callable[[int], jnp.array]:
+    """Returns a linear warmup, cosine decay learning rate function."""
+    steps_per_epoch = train_ds_size // train_batch_size
+    num_train_steps = steps_per_epoch * num_train_epochs
+    warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
+    decay_fn = optax.cosine_decay_schedule(
+        init_value=learning_rate, decay_steps=num_train_steps - num_warmup_steps, alpha=0.1
+    )
+    schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
+    return schedule_fn
+
+
+def main():
+    # See all possible arguments in src/transformers/training_args.py
+    # or by passing the --help flag to this script.
+    # We now keep distinct sets of args, for a cleaner separation of concerns.
+
+    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
+    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
+        # If we pass only one argument to the script and it's the path to a json file,
+        # let's parse it to get our arguments.
+        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
+    else:
+        model_args, data_args, training_args = parser.parse_args_into_dataclasses()
+
+    if (
+        os.path.exists(training_args.output_dir)
+        and os.listdir(training_args.output_dir)
+        and training_args.do_train
+        and not training_args.overwrite_output_dir
+    ):
+        raise ValueError(
+            f"Output directory ({training_args.output_dir}) already exists and is not empty."
+            "Use --overwrite_output_dir to overcome."
+        )
+
+    # Make one log on every process with the configuration for debugging.
+    logging.basicConfig(
+        format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
+        datefmt="%m/%d/%Y %H:%M:%S",
+        level=logging.INFO,
+    )
+    # Setup logging, we only want one process per machine to log things on the screen.
+    logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
+    if jax.process_index() == 0:
+        datasets.utils.logging.set_verbosity_warning()
+        transformers.utils.logging.set_verbosity_info()
+    else:
+        datasets.utils.logging.set_verbosity_error()
+        transformers.utils.logging.set_verbosity_error()
+
+    # Set the verbosity to info of the Transformers logger (on main process only):
+    logger.info(f"Training/evaluation parameters {training_args}")
+
+    # Set seed before initializing model.
+    set_seed(training_args.seed)
+
+    # Handle the repository creation
+    if training_args.push_to_hub:
+        if training_args.hub_model_id is None:
+            repo_name = get_full_repo_name(
+                Path(training_args.output_dir).absolute().name, token=training_args.hub_token
+            )
+        else:
+            repo_name = training_args.hub_model_id
+        repo = Repository(training_args.output_dir, clone_from=repo_name)
+
+    #  Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
+    # or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
+    # (the dataset will be downloaded automatically from the datasets Hub).
+    #
+    # For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
+    # 'text' is found. You can easily tweak this behavior (see below).
+    #
+    # In distributed training, the load_dataset function guarantees that only one local process can concurrently
+    # download the dataset.
+    if data_args.dataset_name is not None:
+        # Downloading and loading a dataset from the hub.
+        dataset = load_dataset(
+            data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir, keep_in_memory=False
+        )
+
+        if "validation" not in dataset.keys():
+            dataset["validation"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split=f"train[:{data_args.validation_split_percentage}%]",
+                cache_dir=model_args.cache_dir,
+            )
+            dataset["train"] = load_dataset(
+                data_args.dataset_name,
+                data_args.dataset_config_name,
+                split=f"train[{data_args.validation_split_percentage}%:]",
+                cache_dir=model_args.cache_dir,
+            )
+
+    elif data_args.dataset_filepath is not None:
+        # Loading a dataset from local file.
+        dataset = load_from_disk(data_args.dataset_filepath)
+        if "validation" not in dataset.keys():
+            dataset = datasets.train_test_split(test_size=data_args.validation_split_percentage/100)
+            dataset["validation"] = dataset["test"]
+            del dataset["test"]
+
+    else:
+        data_files = {}
+        dataset_args = {}
+        if data_args.train_file is not None:
+            data_files["train"] = data_args.train_file
+        if data_args.validation_file is not None:
+            data_files["validation"] = data_args.validation_file
+        extension = data_args.train_file.split(".")[-1]
+        if extension == "txt":
+            extension = "text"
+            dataset_args["keep_linebreaks"] = data_args.keep_linebreaks
+        dataset = load_dataset(extension, data_files=data_files, cache_dir=model_args.cache_dir, **dataset_args)
+
+        if "validation" not in dataset.keys():
+            dataset["validation"] = load_dataset(
+                extension,
+                data_files=data_files,
+                split=f"train[:{data_args.validation_split_percentage}%]",
+                cache_dir=model_args.cache_dir,
+                **dataset_args,
+            )
+            dataset["train"] = load_dataset(
+                extension,
+                data_files=data_files,
+                split=f"train[{data_args.validation_split_percentage}%:]",
+                cache_dir=model_args.cache_dir,
+                **dataset_args,
+            )
+    # See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
+    # https://huggingface.co/docs/datasets/loading_datasets.html.
+
+    # Load pretrained model and tokenizer
+
+    # Distributed training:
+    # The .from_pretrained methods guarantee that only one local process can concurrently
+    # download model & vocab.
+    if model_args.config_name:
+        config = AutoConfig.from_pretrained(model_args.config_name, cache_dir=model_args.cache_dir)
+    elif model_args.model_name_or_path:
+        config = AutoConfig.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
+    else:
+        config = CONFIG_MAPPING[model_args.model_type]()
+        logger.warning("You are instantiating a new config instance from scratch.")
+
+    if model_args.tokenizer_name:
+        tokenizer = AutoTokenizer.from_pretrained(
+            model_args.tokenizer_name, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
+        )
+    elif model_args.model_name_or_path:
+        tokenizer = AutoTokenizer.from_pretrained(
+            model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
+        )
+    else:
+        raise ValueError(
+            "You are instantiating a new tokenizer from scratch. This is not supported by this script."
+            "You can do it from another script, save it, and load it from here, using --tokenizer_name."
+        )
+
+    if tokenizer.pad_token is None:
+        tokenizer.pad_token = tokenizer.eos_token
+
+    if model_args.model_name_or_path:
+        model = FlaxAutoModelForCausalLM.from_pretrained(
+            model_args.model_name_or_path, config=config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype)
+        )
+    else:
+        model = FlaxAutoModelForCausalLM.from_config(
+            config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype)
+        )
+
+    # Preprocessing the datasets.
+    # First we tokenize all the texts.
+    if training_args.do_train:
+        column_names = dataset["train"].column_names
+    else:
+        column_names = dataset["validation"].column_names
+    text_column_name = "text" if "text" in column_names else column_names[0]
+
+    # since this will be pickled to avoid _LazyModule error in Hasher force logger loading before tokenize_function
+    tok_logger = transformers.utils.logging.get_logger("transformers.tokenization_utils_base")
+
+    def tokenize_function(examples):
+        with CaptureLogger(tok_logger) as cl:
+            output = tokenizer(examples[text_column_name])
+        # clm input could be much much longer than block_size
+        if "Token indices sequence length is longer than the" in cl.out:
+            tok_logger.warning(
+                "^^^^^^^^^^^^^^^^ Please ignore the warning above - this long input will be chunked into smaller bits before being passed to the model."
+            )
+        return output
+
+    tokenized_datasets = dataset.map(
+        tokenize_function,
+        batched=True,
+        num_proc=data_args.preprocessing_num_workers,
+        remove_columns=column_names,
+        load_from_cache_file=not data_args.overwrite_cache,
+    )
+
+    if data_args.block_size is None:
+        block_size = tokenizer.model_max_length
+        if block_size > config.max_position_embeddings:
+            logger.warning(
+                f"The tokenizer picked seems to have a very large `model_max_length` ({tokenizer.model_max_length}). "
+                "Picking 1024 instead. You can change that default value by passing --block_size xxx."
+            )
+            block_size = 1024
+    else:
+        if data_args.block_size > tokenizer.model_max_length:
+            logger.warning(
+                f"The block_size passed ({data_args.block_size}) is larger than the maximum length for the model"
+                f"({tokenizer.model_max_length}). Using block_size={tokenizer.model_max_length}."
+            )
+        block_size = min(data_args.block_size, tokenizer.model_max_length)
+
+    # Main data processing function that will concatenate all texts from our dataset and generate chunks of block_size.
+    def group_texts(examples):
+        # Concatenate all texts.
+        concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
+        total_length = len(concatenated_examples[list(examples.keys())[0]])
+        # We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
+        # customize this part to your needs.
+        if total_length >= block_size:
+            total_length = (total_length // block_size) * block_size
+        # Split by chunks of max_len.
+        result = {
+            k: [t[i : i + block_size] for i in range(0, total_length, block_size)]
+            for k, t in concatenated_examples.items()
+        }
+        result["labels"] = result["input_ids"].copy()
+        return result
+
+    # Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a remainder
+    # for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value might be slower
+    # to preprocess.
+    #
+    # To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
+    # https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
+
+    lm_datasets = tokenized_datasets.map(
+        group_texts,
+        batched=True,
+        num_proc=data_args.preprocessing_num_workers,
+        load_from_cache_file=not data_args.overwrite_cache,
+    )
+
+    if training_args.do_train:
+        if "train" not in tokenized_datasets:
+            raise ValueError("--do_train requires a train dataset")
+        train_dataset = lm_datasets["train"]
+        if data_args.max_train_samples is not None:
+            train_dataset = train_dataset.select(range(data_args.max_train_samples))
+        
+        # test to see that tokenization worked
+        detokenized_example = tokenizer.decode(train_dataset[0]["input_ids"])
+        logger.info(f"Detokenized example: {detokenized_example}")
+        detokenized_example = tokenizer.decode(train_dataset[-1]["input_ids"])
+        logger.info(f"Detokenized example 2: {detokenized_example}")
+
+    if training_args.do_eval:
+        if "validation" not in tokenized_datasets:
+            raise ValueError("--do_eval requires a validation dataset")
+        eval_dataset = lm_datasets["validation"]
+        if data_args.max_eval_samples is not None:
+            eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
+
+    # Enable tensorboard only on the master node
+    has_tensorboard = is_tensorboard_available()
+    if has_tensorboard and jax.process_index() == 0:
+        try:
+            from flax.metrics.tensorboard import SummaryWriter
+
+            summary_writer = SummaryWriter(log_dir=Path(os.path.join(training_args.output_dir, "runs")))
+        except ImportError as ie:
+            has_tensorboard = False
+            logger.warning(
+                f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
+            )
+    else:
+        logger.warning(
+            "Unable to display metrics through TensorBoard because the package is not installed: "
+            "Please run pip install tensorboard to enable."
+        )
+
+    # Initialize our training
+    rng = jax.random.PRNGKey(training_args.seed)
+    rng, dropout_rng = jax.random.split(rng)
+
+    # Store some constant
+    num_epochs = int(training_args.num_train_epochs)
+    train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count() * training_args.gradient_accumulation_steps
+    eval_batch_size = int(training_args.per_device_eval_batch_size) * jax.device_count()
+    steps_per_epoch = len(train_dataset) // train_batch_size
+    total_train_steps = steps_per_epoch * num_epochs
+
+    if training_args.warmup_ratio > 0:
+        warmup_steps = int(total_train_steps * training_args.warmup_ratio)
+    else:
+        warmup_steps = training_args.warmup_steps
+
+    # Create learning rate schedule
+    if training_args.cosine_decay:
+        lr_schedule_fn = create_cosine_learning_rate_fn(
+            len(train_dataset),
+            train_batch_size,
+            training_args.num_train_epochs,
+            warmup_steps,
+            training_args.learning_rate,
+        )
+    else:
+        lr_schedule_fn = create_linear_learning_rate_fn(
+            len(train_dataset),
+            train_batch_size,
+            training_args.num_train_epochs,
+            warmup_steps,
+            training_args.learning_rate,
+        )
+
+    # We use Optax's "masking" functionality to not apply weight decay
+    # to bias and LayerNorm scale parameters. decay_mask_fn returns a
+    # mask boolean with the same structure as the parameters.
+    # The mask is True for parameters that should be decayed.
+    # Note that this mask is specifically adapted for FlaxGPT2.
+    # For other models, one should correct the layer norm parameter naming
+    # accordingly.
+    def decay_mask_fn(params):
+        flat_params = traverse_util.flatten_dict(params)
+        flat_mask = {
+            path: (path[-1] != "bias" and path[-2:] not in [("ln_1", "scale"), ("ln_2", "scale"), ("ln_f", "scale")])
+            for path in flat_params
+        }
+        return traverse_util.unflatten_dict(flat_mask)
+
+    # create adam optimizer
+    if training_args.adafactor:
+        # We use the default parameters here to initialize adafactor,
+        # For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
+        optimizer = optax.adafactor(
+            learning_rate=lr_schedule_fn,
+        )
+
+    elif training_args.distributed_shampoo:
+        # parameters from https://github.com/tensorflow/lingvo/blob/03ee9d7cd50764b0424c7c863733c91fc0b053ec/lingvo/jax/optimizers.py#L729
+        # Notes:
+        # - mask for weight decay is not implemented but we don't use it anyway
+        optimizer = distributed_shampoo(
+            lr_schedule_fn,
+            block_size=1536,  # recommended default for large LM is 1536
+            beta1=0.9,
+            beta2=0.999,
+            diagonal_epsilon=1e-10,
+            matrix_epsilon=1e-8,
+            weight_decay=0.0,
+            start_preconditioning_step=1001,
+            preconditioning_compute_steps=10,
+            statistics_compute_steps=1,
+            best_effort_shape_interpretation=True,
+            graft_type=GraftingType.RMSPROP_NORMALIZED,
+            nesterov=False,
+            exponent_override=0,
+            batch_axis_name="batch",
+            inverse_failure_threshold=0.1,
+            moving_average_for_momentum=True,
+            skip_preconditioning_dim_size_gt=4096,
+            clip_by_scaled_gradient_norm=None,
+            precision=jax.lax.Precision.HIGHEST,
+            best_effort_memory_usage_reduction=training_args.quantize_shampoo,
+        )
+    else:
+        optimizer = optax.adamw(
+            learning_rate=lr_schedule_fn,
+            b1=training_args.adam_beta1,
+            b2=training_args.adam_beta2,
+            eps=training_args.adam_epsilon,
+            weight_decay=training_args.weight_decay,
+            mask=decay_mask_fn,
+        )
+        if training_args.gradient_clipping:
+            optimizer = optax.chain(
+                optax.clip_by_global_norm(1.),
+                optimizer
+            )
+
+    # add gradient accumulation
+    if training_args.gradient_accumulation_steps > 1:
+        optimizer = optax.chain(
+            optax.apply_every(training_args.gradient_accumulation_steps), optimizer
+        )
+
+    # Setup train state
+    state = TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer, dropout_rng=dropout_rng)
+
+    def loss_fn(logits, labels):
+        shift_logits = logits[..., :-1, :]
+        shift_labels = labels[..., 1:]
+        loss = optax.softmax_cross_entropy(shift_logits, onehot(shift_labels, shift_logits.shape[-1]))
+        return loss.mean()
+
+    # Define gradient update step fn
+    def train_step(state, batch):
+        dropout_rng, new_dropout_rng = jax.random.split(state.dropout_rng)
+
+        def compute_loss(params):
+            labels = batch.pop("labels")
+            logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
+            loss = loss_fn(logits, labels)
+            return loss
+
+        grad_fn = jax.value_and_grad(compute_loss)
+        loss, grad = grad_fn(state.params)
+        grad = jax.lax.pmean(grad, "batch")
+
+        new_state = state.apply_gradients(grads=grad, dropout_rng=new_dropout_rng)
+
+        metrics = {"loss": loss, "learning_rate": lr_schedule_fn(state.step // training_args.gradient_accumulation_steps)}
+        metrics = jax.lax.pmean(metrics, axis_name="batch")
+
+        return new_state, metrics
+
+    # Define eval fn
+    def eval_step(params, batch):
+        labels = batch.pop("labels")
+        logits = model(**batch, params=params, train=False)[0]
+        loss = loss_fn(logits, labels)
+
+        # summarize metrics
+        metrics = {"loss": loss}
+        metrics = jax.lax.pmean(metrics, axis_name="batch")
+        return metrics
+
+    # Create parallel version of the train and eval step
+    p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
+    p_eval_step = jax.pmap(eval_step, "batch")
+
+    # Replicate the train state on each device
+    state = state.replicate()
+
+    logger.info("***** Running training *****")
+    logger.info(f"  Num examples = {len(train_dataset)}")
+    logger.info(f"  Num Epochs = {num_epochs}")
+    logger.info(f"  Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
+    logger.info(f"  Total train batch size (w. parallel & distributed) = {train_batch_size}")
+    logger.info(f"  Total optimization steps = {total_train_steps}")
+
+    train_time = 0
+    train_metrics = []
+    epochs = tqdm(range(num_epochs), desc="Epoch ... ", position=0)
+    for epoch in epochs:
+        # ======================== Training ================================
+        train_start = time.time()
+
+        # Create sampling rng
+        rng, input_rng = jax.random.split(rng)
+
+        # Generate an epoch by shuffling sampling indices from the train dataset
+        train_loader = data_loader(input_rng, train_dataset, train_batch_size // training_args.gradient_accumulation_steps, shuffle=True)
+        steps_per_epoch = len(train_dataset) // train_batch_size
+        # train
+        steps_trained_progress_bar = tqdm(range(steps_per_epoch), desc="Training...", position=1,
+                                          leave=False)
+        for step in range(steps_per_epoch * training_args.gradient_accumulation_steps):
+            batch = next(train_loader)
+            batch = shard(batch)
+            state, train_metric = p_train_step(state, batch)
+            train_metrics.append(train_metric)
+
+            cur_step = epoch * (steps_per_epoch*training_args.gradient_accumulation_steps) + step
+
+            if step % training_args.gradient_accumulation_steps == 0:
+                steps_trained_progress_bar.update(1)
+
+            if cur_step % (training_args.logging_steps * training_args.gradient_accumulation_steps) == 0 and cur_step > 0:
+                # Save metrics
+                train_metric = unreplicate(train_metric)
+                train_time += time.time() - train_start
+                if has_tensorboard and jax.process_index() == 0:
+                    write_train_metric(summary_writer, train_metrics, train_time, cur_step)
+
+                epochs.write(
+                    f"Step... ({cur_step} | Loss: {train_metric['loss'].mean()}, Learning Rate: {train_metric['learning_rate'].mean()})"
+                )
+
+                train_metrics = []
+
+            if cur_step % (training_args.eval_steps * training_args.gradient_accumulation_steps) == 0 and cur_step > 0:
+                # ======================== Evaluating ==============================
+                eval_metrics = []
+                eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size)
+                eval_steps = len(eval_dataset) // eval_batch_size
+                for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
+                    # Model forward
+                    batch = next(eval_loader)
+                    batch = shard(batch)
+                    metrics = p_eval_step(state.params, batch)
+                    eval_metrics.append(metrics)
+
+                # normalize eval metrics
+                eval_metrics = get_metrics(eval_metrics)
+                eval_metrics = jax.tree_map(jnp.mean, eval_metrics)
+
+                try:
+                    eval_metrics["perplexity"] = math.exp(eval_metrics["loss"])
+                except OverflowError:
+                    eval_metrics["perplexity"] = float("inf")
+
+                # Print metrics and update progress bar
+                desc = f"Step... ({cur_step} | Eval Loss: {eval_metrics['loss']} | Eval Perplexity: {eval_metrics['perplexity']})"
+                epochs.write(desc)
+                epochs.desc = desc
+
+                # Save metrics
+                if has_tensorboard and jax.process_index() == 0:
+                    write_eval_metric(summary_writer, eval_metrics, cur_step)
+
+            if cur_step % (training_args.save_steps * training_args.gradient_accumulation_steps) == 0 and cur_step > 0:
+                # save checkpoint after each epoch and push checkpoint to the hub
+                if jax.process_index() == 0:
+                    params = jax.device_get(unreplicate(state.params))
+                    model.save_pretrained(training_args.output_dir, params=params)
+                    tokenizer.save_pretrained(training_args.output_dir)
+                    if training_args.push_to_hub:
+                        repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False, auto_lfs_prune=True)
+
+        # save also at the end of epoch
+        try:
+            if jax.process_index() == 0:
+                params = jax.device_get(unreplicate(state.params))
+                model.save_pretrained(training_args.output_dir, params=params)
+                tokenizer.save_pretrained(training_args.output_dir)
+                if training_args.push_to_hub:
+                    repo.push_to_hub(commit_message=f"Saving weights and logs of epoch {epoch}", blocking=False, auto_lfs_prune=True)
+        except:
+            # push to hub fails the whole script if nothing new to commit
+            pass
+
+    # Eval after training
+    if training_args.do_eval:
+        eval_metrics = []
+        eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size)
+        eval_steps = len(eval_dataset) // eval_batch_size
+        for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
+            # Model forward
+            batch = shard(next(eval_loader))
+            metrics = p_eval_step(state.params, batch)
+            eval_metrics.append(metrics)
+
+        # normalize eval metrics
+        eval_metrics = get_metrics(eval_metrics)
+        eval_metrics = jax.tree_map(lambda x: jnp.mean(x).item(), eval_metrics)
+
+        try:
+            eval_metrics["perplexity"] = math.exp(eval_metrics["loss"])
+        except OverflowError:
+            eval_metrics["perplexity"] = float("inf")
+
+        if jax.process_index() == 0:
+            eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
+            path = os.path.join(training_args.output_dir, "eval_results.json")
+            with open(path, "w") as f:
+                json.dump(eval_metrics, f, indent=4, sort_keys=True)
+
+
+if __name__ == "__main__":
+    main()

special_tokens_map.json

@@ -0,0 +1 @@
+{"bos_token": "<|endoftext|>", "eos_token": "<|endoftext|>", "unk_token": "<|endoftext|>", "pad_token": "<|endoftext|>"}

start_train.sh

@@ -0,0 +1,29 @@
+# set train hyperparams
+unset LD_PRELOAD
+export HF_DATASETS_CACHE="/researchdisk/datasets_cache"
+export USE_TORCH=0
+python3 run_clm_flax.py \
+    --output_dir="./" \
+    --model_type="gpt2" \
+    --config_name="./" \
+    --tokenizer_name="./" \
+    --dataset_filepath="/researchdisk/training_dataset_full_deduplicated" \
+    --do_train --do_eval \
+    --block_size="512" \
+    --per_device_train_batch_size="16" \
+    --per_device_eval_batch_size="16" \
+    --preprocessing_num_workers="1" \
+    --adam_beta1="0.9" \
+    --adam_beta2="0.98" \
+    --learning_rate="1e-5" \
+    --weight_decay="0.01" \
+    --warmup_steps="4000" \
+    --cosine_decay \
+    --overwrite_output_dir \
+    --logging_steps="500" \
+    --eval_steps="10000" \
+    --save_steps="50000" \
+    --num_train_epochs="5" \
+    --dtype="bfloat16" \
+    --push_to_hub \
+    --hub_model_id="Finnish-NLP/gpt2-large-finnish"

tokenizer_config.json

@@ -0,0 +1 @@
+{"unk_token": "<|endoftext|>", "bos_token": "<|endoftext|>", "eos_token": "<|endoftext|>", "add_prefix_space": false, "special_tokens_map_file": null, "name_or_path": "./", "tokenizer_class": "GPT2Tokenizer"}

train_tokenizer.py

@@ -0,0 +1,30 @@
+from datasets import load_from_disk
+from tokenizers import trainers, Tokenizer, normalizers, ByteLevelBPETokenizer
+from transformers import AutoTokenizer
+
+
+model_dir = "./"
+
+# load dataset
+dataset = load_from_disk("/researchdisk/training_dataset_full_deduplicated")
+dataset = dataset["train"]
+
+# Instantiate tokenizer
+tokenizer = ByteLevelBPETokenizer()
+def batch_iterator(batch_size=1000):
+    for i in range(0, len(dataset), batch_size):
+        yield dataset[i: i + batch_size]["text"]
+
+# Customized training
+tokenizer.train_from_iterator(batch_iterator(), vocab_size=50257, min_frequency=2, special_tokens=[
+    "<s>",
+    "<pad>",
+    "</s>",
+    "<unk>",
+    "<mask>",
+])
+
+# Save files to disk
+tokenizer.save(f"{model_dir}/tokenizer.json")
+tokenizer = AutoTokenizer.from_pretrained(model_dir)
+tokenizer.save_pretrained(model_dir)