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README.md
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@@ -12,9 +12,10 @@ Currently, this model is trained on **7.1 million Plant DNA promoter sequences**
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References:
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- [GitHub Repository](https://github.com/gurveervirk/florabert/)
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- [Kaggle Dataset](https://www.kaggle.com/datasets/gurveersinghvirk/florabert-base)
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To get predictions from **DNA promoter sequences of plants
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For example
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- Update ```main("test.txt")``` with your file name
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- Now, run ```python prediction.py```
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@@ -23,7 +24,7 @@ The results will be visible in tabular format in the console.
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For example,
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| tassel | base | anther | middle | ear | shoot | tip | root |
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|--------|--------|--------|--------|--------|--------|--------|--------|
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The values in the table correspond to TPM values for the tissues in the plants. TPM values are normalized gene expression values.
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References:
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- [GitHub Repository](https://github.com/gurveervirk/florabert/)
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- [Kaggle Dataset](https://www.kaggle.com/datasets/gurveersinghvirk/florabert-base)
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- [Video Demo](https://youtu.be/WZzjHH740kw)
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To get predictions from **DNA promoter sequences of plants** from console / command-line directly, add your text file containing the sequences (1 sequence per line) to the data folder and call the main() function from prediction.py with your file name.
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For example:
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- Update ```main("test.txt")``` with your file name
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- Now, run ```python prediction.py```
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For example,
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| tassel | base | anther | middle | ear | shoot | tip | root |
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|--------|--------|--------|--------|--------|--------|--------|--------|
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| 8.65 | 7.901 | 2.004 | 8.4001 | 7.523 | 6.23 | 9.0112 | 8.221 |
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The values in the table correspond to TPM values for the tissues in the plants. TPM values are normalized gene expression values.
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