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config.json

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+{
+  "_name_or_path": "SCAI-BIO/bio-gottbert-base",
+  "architectures": [
+    "RobertaForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "bos_token_id": 0,
+  "classifier_dropout": null,
+  "eos_token_id": 2,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "B-Mutation",
+    "1": "B-ExpressionSignal",
+    "2": "B-PolaritySignal",
+    "3": "I-HematoDiagnosis",
+    "4": "I-MorphologicAbnormality",
+    "5": "B-Infection",
+    "6": "I-Infection",
+    "7": "I-Proliferation",
+    "8": "B-Hematopoiesis",
+    "9": "I-DiagnosisType",
+    "10": "I-CellAssociation",
+    "11": "B-SizeSignal",
+    "12": "I-ShiftSignal",
+    "13": "I-PolaritySignal",
+    "14": "O",
+    "15": "B-AmountSignal",
+    "16": "B-MalignancySignal",
+    "17": "I-SizeSignal",
+    "18": "I-OtherDiagnosis",
+    "19": "I-MalignancySignal",
+    "20": "B-Expression",
+    "21": "B-DiagnosisType",
+    "22": "B-Proliferation",
+    "23": "I-Expression",
+    "24": "B-QuantitySignal",
+    "25": "B-MorphologicAbnormality",
+    "26": "B-ShiftSignal",
+    "27": "B-HematoDiagnosis",
+    "28": "B-CellType",
+    "29": "B-OtherDiagnosis",
+    "30": "B-ClonalitySignal",
+    "31": "B-CellAssociation",
+    "32": "I-QuantitySignal",
+    "33": "I-Mutation",
+    "34": "I-Hematopoiesis",
+    "35": "I-CellType",
+    "36": "I-AmountSignal",
+    "37": "I-ClonalitySignal",
+    "38": "I-ExpressionSignal"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "B-AmountSignal": 15,
+    "B-CellAssociation": 31,
+    "B-CellType": 28,
+    "B-ClonalitySignal": 30,
+    "B-DiagnosisType": 21,
+    "B-Expression": 20,
+    "B-ExpressionSignal": 1,
+    "B-HematoDiagnosis": 27,
+    "B-Hematopoiesis": 8,
+    "B-Infection": 5,
+    "B-MalignancySignal": 16,
+    "B-MorphologicAbnormality": 25,
+    "B-Mutation": 0,
+    "B-OtherDiagnosis": 29,
+    "B-PolaritySignal": 2,
+    "B-Proliferation": 22,
+    "B-QuantitySignal": 24,
+    "B-ShiftSignal": 26,
+    "B-SizeSignal": 11,
+    "I-AmountSignal": 36,
+    "I-CellAssociation": 10,
+    "I-CellType": 35,
+    "I-ClonalitySignal": 37,
+    "I-DiagnosisType": 9,
+    "I-Expression": 23,
+    "I-ExpressionSignal": 38,
+    "I-HematoDiagnosis": 3,
+    "I-Hematopoiesis": 34,
+    "I-Infection": 6,
+    "I-MalignancySignal": 19,
+    "I-MorphologicAbnormality": 4,
+    "I-Mutation": 33,
+    "I-OtherDiagnosis": 18,
+    "I-PolaritySignal": 13,
+    "I-Proliferation": 7,
+    "I-QuantitySignal": 32,
+    "I-ShiftSignal": 12,
+    "I-SizeSignal": 17,
+    "O": 14
+  },
+  "layer_norm_eps": 1e-05,
+  "max_position_embeddings": 514,
+  "model_type": "roberta",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 1,
+  "position_embedding_type": "absolute",
+  "torch_dtype": "float32",
+  "transformers_version": "4.36.2",
+  "type_vocab_size": 1,
+  "use_cache": true,
+  "vocab_size": 52009
+}

model.safetensors

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+version https://git-lfs.github.com/spec/v1
+oid sha256:15104c354ea0e72a89d2f440b29986c6526d7fb69f2a26e6190bc7699464b564
+size 501721628

special_tokens_map.json

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+{
+  "bos_token": {
+    "content": "<s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "cls_token": {
+    "content": "<s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "eos_token": {
+    "content": "</s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "mask_token": {
+    "content": "<mask>",
+    "lstrip": true,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "<pad>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "sep_token": {
+    "content": "</s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": {
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

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+{
+  "add_prefix_space": true,
+  "added_tokens_decoder": {
+    "0": {
+      "content": "<s>",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "<pad>",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "</s>",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "<unk>",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "52008": {
+      "content": "<mask>",
+      "lstrip": true,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "bos_token": "<s>",
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "<s>",
+  "eos_token": "</s>",
+  "errors": "replace",
+  "mask_token": "<mask>",
+  "model_max_length": 512,
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "tokenizer_class": "RobertaTokenizer",
+  "trim_offsets": true,
+  "unk_token": "<unk>"
+}

training_args.bin

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+version https://git-lfs.github.com/spec/v1
+oid sha256:d88f62f38ff7a68f342bf5f126db93d90e0c57d9432c66949d98d0dc4cd25f4a
+size 4728