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gatortron-base

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yonghuiwu commited on
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@@ -30,14 +30,15 @@ gatortron-large | 8.9 billion
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  ```python
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  from huggingface_hub import login
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  from transformers import AutoModel, AutoTokenizer, AutoConfig
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- login(token="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")
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- tokinizer= AutoTokenizer.from_pretrained('UFNLP/gatortron-base', use_auth_token=True)
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- config=AutoConfig.from_pretrained('UFNLP/gatortron-base', use_auth_token=True)
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- mymodel=AutoModel.from_pretrained('UFNLP/gatortron-base', use_auth_token=True)
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  encoded_input=tokinizer("Bone scan: Negative for distant metastasis.", return_tensors="pt")
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  encoded_output = mymodel(**encoded_input)
 
 
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  ```
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  - An NLP pacakge using GatorTron for clinical concept extraction (Named Entity Recognition): https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER
 
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  ```python
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  from huggingface_hub import login
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  from transformers import AutoModel, AutoTokenizer, AutoConfig
 
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+ tokinizer= AutoTokenizer.from_pretrained('UFNLP/gatortron-base')
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+ config=AutoConfig.from_pretrained('UFNLP/gatortron-base')
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+ mymodel=AutoModel.from_pretrained('UFNLP/gatortron-base')
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  encoded_input=tokinizer("Bone scan: Negative for distant metastasis.", return_tensors="pt")
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  encoded_output = mymodel(**encoded_input)
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+ print (encoded_output)
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+
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  ```
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  - An NLP pacakge using GatorTron for clinical concept extraction (Named Entity Recognition): https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER