Update MedQA_Maze.py
Browse files- MedQA_Maze.py +53 -64
MedQA_Maze.py
CHANGED
@@ -1,15 +1,28 @@
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import os
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import json
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import datasets
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import logging
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_CITATION = ""
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_DESCRIPTION = ""
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class MedQaMazeConfig(datasets.BuilderConfig):
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def __init__(self, **kwargs):
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super().__init__(version=datasets.Version("1.0.0"), **kwargs)
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@@ -18,8 +31,8 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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BUILDER_CONFIGS = [
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MedQaMazeConfig(name="default", description="A default config"),
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MedQaMazeConfig(name="advance", description="Advanced-level test data"),
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MedQaMazeConfig(name="all",
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MedQaMazeConfig(name="basic",
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MedQaMazeConfig(name="challenge", description="Challenge-level test data"),
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]
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@@ -36,74 +49,50 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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"answer": datasets.Value("string"),
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}),
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supervised_keys=None,
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)
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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base_path = os.path.dirname(os.path.abspath(__file__))
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logger.info(f"Base path: {base_path}")
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if
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logger.info(f"Looking for advance test file at: {filepath}")
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if not os.path.exists(filepath):
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raise ValueError(f"File not found: {filepath}")
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"filepath": filepath}
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)
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]
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elif config_name == "all":
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train_path = os.path.join(base_path, "all", "train.jsonl")
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test_path = os.path.join(base_path, "all", "test.jsonl")
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logger.info(f"Looking for train file at: {train_path}")
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logger.info(f"Looking for test file at: {test_path}")
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if not os.path.exists(train_path):
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raise ValueError(f"Train file not found: {train_path}")
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if not os.path.exists(test_path):
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raise ValueError(f"Test file not found: {test_path}")
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"filepath":
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)
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"filepath":
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)
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def _generate_examples(self, filepath):
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"""Yields examples."""
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data
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yield idx, example
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except json.JSONDecodeError as e:
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logger.error(f"Error parsing JSON at line {idx} in {filepath}: {e}")
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continue
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except Exception as e:
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logger.error(f"Error reading file {filepath}: {e}")
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raise
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import os
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import json
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import datasets
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_CITATION = ""
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_DESCRIPTION = ""
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_URLs = {
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"all": {
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"train": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/all/train.jsonl",
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/all/test.jsonl"
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},
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"basic": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/basic/test.jsonl"
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},
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"advance": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/advance/test.jsonl"
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},
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"challenge": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/challenge/test.jsonl"
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}
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}
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# Rest of your code remains the same...
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class MedQaMazeConfig(datasets.BuilderConfig):
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def __init__(self, **kwargs):
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super().__init__(version=datasets.Version("1.0.0"), **kwargs)
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BUILDER_CONFIGS = [
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MedQaMazeConfig(name="default", description="A default config"),
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MedQaMazeConfig(name="advance", description="Advanced-level test data"),
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MedQaMazeConfig(name="all", description="Full dataset with train and test"),
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MedQaMazeConfig(name="basic", description="Basic-level test data"),
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MedQaMazeConfig(name="challenge", description="Challenge-level test data"),
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]
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"answer": datasets.Value("string"),
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}),
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supervised_keys=None,
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homepage="https://huggingface.co/datasets/JesseLiu/MedQA_Maze",
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citation=_CITATION,
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)
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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config_name = self.config.name if self.config.name != "default" else "all"
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# Download the files
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urls = _URLs[config_name]
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data_files = dl_manager.download_and_extract(urls)
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splits = []
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if "train" in data_files:
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splits.append(
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"filepath": data_files["train"]}
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)
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)
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if "test" in data_files:
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splits.append(
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"filepath": data_files["test"]}
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)
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)
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return splits
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def _generate_examples(self, filepath):
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"""Yields examples."""
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with open(filepath, encoding="utf-8") as f:
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for idx, line in enumerate(f):
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try:
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data = json.loads(line.strip())
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yield idx, {
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"context": data.get("context", ""),
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"question": data.get("question", ""),
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"prerequisit": data.get("prerequisit", ""),
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"groundtruth_zoo": data.get("groundtruth_zoo", []),
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"answer": data.get("answer", ""),
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}
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except json.JSONDecodeError:
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print(f"Warning: Skipping invalid JSON at line {idx} in {filepath}")
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continue
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