Update MedQA_Maze.py
Browse files- MedQA_Maze.py +52 -35
MedQA_Maze.py
CHANGED
@@ -1,28 +1,15 @@
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import os
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import json
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import datasets
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_CITATION = ""
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_DESCRIPTION = ""
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_URLs = {
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"all": {
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"train": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/all/train.jsonl",
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/all/test.jsonl"
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},
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"basic": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/basic/test.jsonl"
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},
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"advance": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/advance/test.jsonl"
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},
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"challenge": {
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"test": "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/raw/main/challenge/test.jsonl"
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}
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}
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# Rest of your code remains the same...
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class MedQaMazeConfig(datasets.BuilderConfig):
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def __init__(self, **kwargs):
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super().__init__(version=datasets.Version("1.0.0"), **kwargs)
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@@ -31,8 +18,8 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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BUILDER_CONFIGS = [
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MedQaMazeConfig(name="default", description="A default config"),
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MedQaMazeConfig(name="advance", description="Advanced-level test data"),
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MedQaMazeConfig(name="all",
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MedQaMazeConfig(name="basic",
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MedQaMazeConfig(name="challenge", description="Challenge-level test data"),
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]
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@@ -56,10 +43,25 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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config_name = self.config.name if self.config.name != "default" else "all"
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splits = []
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if "train" in data_files:
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@@ -69,7 +71,6 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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gen_kwargs={"filepath": data_files["train"]}
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)
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)
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if "test" in data_files:
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splits.append(
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datasets.SplitGenerator(
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@@ -78,21 +79,37 @@ class MedQaMaze(datasets.GeneratorBasedBuilder):
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)
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)
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return splits
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def _generate_examples(self, filepath):
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"""Yields examples."""
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try:
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data = json.loads(line
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"context": data.get("context", ""),
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"question": data.get("question", ""),
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"prerequisit": data.get("prerequisit", ""),
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"groundtruth_zoo": data.get("groundtruth_zoo", []),
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"answer": data.get("answer", ""),
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}
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continue
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import os
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import json
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import datasets
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import logging
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logger = logging.getLogger(__name__)
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_CITATION = ""
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_DESCRIPTION = ""
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_BASE_URL = "https://huggingface.co/datasets/JesseLiu/MedQA_Maze/resolve/main"
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class MedQaMazeConfig(datasets.BuilderConfig):
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def __init__(self, **kwargs):
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super().__init__(version=datasets.Version("1.0.0"), **kwargs)
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BUILDER_CONFIGS = [
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MedQaMazeConfig(name="default", description="A default config"),
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MedQaMazeConfig(name="advance", description="Advanced-level test data"),
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MedQaMazeConfig(name="all", description="Full dataset with train and test"),
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MedQaMazeConfig(name="basic", description="Basic-level test data"),
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MedQaMazeConfig(name="challenge", description="Challenge-level test data"),
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]
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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config_name = self.config.name if self.config.name != "default" else "all"
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urls = {}
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if config_name == "all":
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urls = {
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"train": f"{_BASE_URL}/all/train.jsonl",
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"test": f"{_BASE_URL}/all/test.jsonl"
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}
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elif config_name in ["basic", "advance", "challenge"]:
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urls = {
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"test": f"{_BASE_URL}/{config_name}/test.jsonl"
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}
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else:
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raise ValueError(f"Unsupported config: {config_name}")
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try:
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data_files = dl_manager.download(urls)
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logger.info(f"Downloaded files: {data_files}")
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except Exception as e:
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raise ValueError(f"Failed to download files: {e}")
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splits = []
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if "train" in data_files:
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gen_kwargs={"filepath": data_files["train"]}
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)
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)
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if "test" in data_files:
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splits.append(
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datasets.SplitGenerator(
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)
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)
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if not splits:
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raise ValueError(f"No valid splits found for config {config_name}")
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return splits
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def _generate_examples(self, filepath):
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"""Yields examples."""
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logger.info(f"Generating examples from {filepath}")
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if not os.path.exists(filepath):
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raise ValueError(f"File not found: {filepath}")
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with open(filepath, 'r', encoding='utf-8') as f:
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content = f.read().strip()
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# Split by newlines and filter out empty lines
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lines = [line.strip() for line in content.split('\n') if line.strip()]
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for idx, line in enumerate(lines):
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try:
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data = json.loads(line)
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example = {
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"context": str(data.get("context", "")),
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"question": str(data.get("question", "")),
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"prerequisit": str(data.get("prerequisit", "")),
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"groundtruth_zoo": [str(x) for x in data.get("groundtruth_zoo", [])],
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"answer": str(data.get("answer", "")),
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}
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yield idx, example
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except json.JSONDecodeError as e:
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logger.error(f"Error parsing JSON at line {idx} in {filepath}: {e}\nLine content: {line[:100]}...")
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continue
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except Exception as e:
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logger.error(f"Unexpected error processing line {idx} in {filepath}: {e}")
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continue
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