User profiles for Luis M. Rodriguez-R
 | Luis M. Rodriguez-RUniversity of Innsbruck Verified email at uibk.ac.at Cited by 8509 |
[HTML][HTML] High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
A fundamental question in microbiology is whether there is continuum of genetic diversity
+among genomes, or clear species boundaries prevail instead. Whole-genome similarity …
+among genomes, or clear species boundaries prevail instead. Whole-genome similarity …
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
LM Rodriguez-R, KT Konstantinidis - 2016 - peerj.com
Genomic and metagenomic analyses are increasingly becoming commonplace in several
+areas of biological research, but recurrent specialized analyses are frequently reported as in-…
+areas of biological research, but recurrent specialized analyses are frequently reported as in-…
[HTML][HTML] Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
This study explored the short-term planktonic microbial community structure and resilience in
+Lake Lanier (GA, USA) while simultaneously evaluating the technical aspects of identifying …
+Lake Lanier (GA, USA) while simultaneously evaluating the technical aspects of identifying …
[PDF][PDF] Bypassing cultivation to identify bacterial species
LM Rodriguez-R, KT Konstantinidis - Microbe, 2014 - researchgate.net
… Rodriguez-R and Konstantinos T. Konstantinidis … Luis M. Rodriguez-R is a Ph.D.
+candidate at the Center for Bioinformatics and Computational Genomics, and School of …
+candidate at the Center for Bioinformatics and Computational Genomics, and School of …
Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
…, TL Lathem, LM Rodriguez-R… - Proceedings of the …, 2013 - National Acad Sciences
The composition and prevalence of microorganisms in the middle-to-upper troposphere (8–15
+km altitude) and their role in aerosol-cloud-precipitation interactions represent important, …
+km altitude) and their role in aerosol-cloud-precipitation interactions represent important, …
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
The small subunit ribosomal RNA gene (16S rRNA) has been successfully used to
+catalogue and study the diversity of prokaryotic species and communities but it offers limited …
+catalogue and study the diversity of prokaryotic species and communities but it offers limited …
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
C Luo, LM Rodriguez-r… - Nucleic acids …, 2014 - academic.oup.com
Determining the taxonomic affiliation of sequences assembled from metagenomes remains
+a major bottleneck that affects research across the fields of environmental, clinical and …
+a major bottleneck that affects research across the fields of environmental, clinical and …
[HTML][HTML] SeqCode: a nomenclatural code for prokaryotes described from sequence data
Most prokaryotes are not available as pure cultures and therefore ineligible for naming under
+the rules and recommendations of the International Code of Nomenclature of Prokaryotes (…
+the rules and recommendations of the International Code of Nomenclature of Prokaryotes (…
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
LM Rodriguez-r, KT Konstantinidis - Bioinformatics, 2014 - academic.oup.com
Motivation: Determining the fraction of the diversity within a microbial community sampled
+and the amount of sequencing required to cover the total diversity represent challenging …
+and the amount of sequencing required to cover the total diversity represent challenging …
The reliability of metagenome-assembled genomes (MAGs) in representing natural populations: insights from comparing MAGs against isolate genomes derived from …
A Meziti, LM Rodriguez-R, JK Hatt… - Applied and …, 2021 - Am Soc Microbiol
The recovery of metagenome-assembled genomes (MAGs) from metagenomic data has
+recently become a common task for microbial studies. The strengths and limitations of the …
+recently become a common task for microbial studies. The strengths and limitations of the …