Datasets:
Tasks:
Token Classification
Modalities:
Text
Sub-tasks:
named-entity-recognition
Languages:
Spanish
Size:
10K - 100K
License:
Update README.md
Browse files
README.md
CHANGED
@@ -18,7 +18,7 @@ licenses:
|
|
18 |
|
19 |
## Introduction
|
20 |
|
21 |
-
This dataset
|
22 |
|
23 |
It is a manually classified collection of clinical case studies derived from the Spanish Clinical Case Corpus (SPACCC), an open access electronic library that gathers Spanish medical publications from SciELO (Scientific Electronic Library Online).
|
24 |
|
@@ -32,29 +32,6 @@ The original dataset was distributed in Brat format (https://brat.nlplab.org/sta
|
|
32 |
|
33 |
For further information, please visit [the official website](https://temu.bsc.es/pharmaconer/).
|
34 |
|
35 |
-
## BibTeX citation
|
36 |
-
If you use these resources in your work, please cite the following paper:
|
37 |
-
|
38 |
-
```bibtex
|
39 |
-
@inproceedings{,
|
40 |
-
title = "PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track",
|
41 |
-
author = "Gonzalez-Agirre, Aitor and
|
42 |
-
Marimon, Montserrat and
|
43 |
-
Intxaurrondo, Ander and
|
44 |
-
Rabal, Obdulia and
|
45 |
-
Villegas, Marta and
|
46 |
-
Krallinger, Martin",
|
47 |
-
booktitle = "Proceedings of The 5th Workshop on BioNLP Open Shared Tasks",
|
48 |
-
month = nov,
|
49 |
-
year = "2019",
|
50 |
-
address = "Hong Kong, China",
|
51 |
-
publisher = "Association for Computational Linguistics",
|
52 |
-
url = "https://aclanthology.org/D19-5701",
|
53 |
-
doi = "10.18653/v1/D19-5701",
|
54 |
-
pages = "1--10",
|
55 |
-
}
|
56 |
-
```
|
57 |
-
|
58 |
## Digital Object Identifier (DOI) and access to dataset files
|
59 |
|
60 |
https://zenodo.org/record/4270158#.YTnXP0MzY0F
|
@@ -111,9 +88,9 @@ enalapril S0004-06142006000900008-1 234_243 B-NORMALIZABLES
|
|
111 |
|
112 |
### Data Splits
|
113 |
|
114 |
-
* train: 8,
|
115 |
-
* development: 3,
|
116 |
-
* test: 3,
|
117 |
|
118 |
## Dataset Creation
|
119 |
|
@@ -129,11 +106,11 @@ For compatibility with similar datasets in other languages, we followed as close
|
|
129 |
|
130 |
#### Initial Data Collection and Normalization
|
131 |
|
132 |
-
|
133 |
|
134 |
#### Who are the source language producers?
|
135 |
|
136 |
-
|
137 |
|
138 |
### Annotations
|
139 |
|
@@ -157,6 +134,29 @@ No personal or sensitive information included.
|
|
157 |
|
158 | |
159 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
160 |
## License
|
161 |
|
162 |
<a rel="license" href="https://creativecommons.org/licenses/by/4.0/"><img alt="Attribution 4.0 International License" style="border-width:0" src="https://chriszabriskie.com/img/cc-by.png" width="100"/></a><br />This work is licensed under a <a rel="license" href="https://creativecommons.org/licenses/by/4.0/">Attribution 4.0 International License</a>.
|
|
|
18 |
|
19 |
## Introduction
|
20 |
|
21 |
+
This dataset was designed for the PharmaCoNER task, sponsored by Plan de Impulso de las Tecnologías del Lenguaje (Plan TL).
|
22 |
|
23 |
It is a manually classified collection of clinical case studies derived from the Spanish Clinical Case Corpus (SPACCC), an open access electronic library that gathers Spanish medical publications from SciELO (Scientific Electronic Library Online).
|
24 |
|
|
|
32 |
|
33 |
For further information, please visit [the official website](https://temu.bsc.es/pharmaconer/).
|
34 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
35 |
## Digital Object Identifier (DOI) and access to dataset files
|
36 |
|
37 |
https://zenodo.org/record/4270158#.YTnXP0MzY0F
|
|
|
88 |
|
89 |
### Data Splits
|
90 |
|
91 |
+
* train: 8,130 sentences
|
92 |
+
* development: 3,788 sentences
|
93 |
+
* test: 3,953 sentences
|
94 |
|
95 |
## Dataset Creation
|
96 |
|
|
|
106 |
|
107 |
#### Initial Data Collection and Normalization
|
108 |
|
109 |
+
Manually classified collection of clinical case report sections. The clinical cases were not restricted to a single medical discipline, covering a variety of medical disciplines, including oncology, urology, cardiology, pneumology or infectious diseases. This is key to cover a diverse set of chemicals and drugs.
|
110 |
|
111 |
#### Who are the source language producers?
|
112 |
|
113 |
+
Humans, there is no machine generated data.
|
114 |
|
115 |
### Annotations
|
116 |
|
|
|
134 |
|
135 | |
136 |
|
137 |
+
## BibTeX citation
|
138 |
+
If you use these resources in your work, please cite the following paper:
|
139 |
+
|
140 |
+
```bibtex
|
141 |
+
@inproceedings{,
|
142 |
+
title = "PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track",
|
143 |
+
author = "Gonzalez-Agirre, Aitor and
|
144 |
+
Marimon, Montserrat and
|
145 |
+
Intxaurrondo, Ander and
|
146 |
+
Rabal, Obdulia and
|
147 |
+
Villegas, Marta and
|
148 |
+
Krallinger, Martin",
|
149 |
+
booktitle = "Proceedings of The 5th Workshop on BioNLP Open Shared Tasks",
|
150 |
+
month = nov,
|
151 |
+
year = "2019",
|
152 |
+
address = "Hong Kong, China",
|
153 |
+
publisher = "Association for Computational Linguistics",
|
154 |
+
url = "https://aclanthology.org/D19-5701",
|
155 |
+
doi = "10.18653/v1/D19-5701",
|
156 |
+
pages = "1--10",
|
157 |
+
}
|
158 |
+
```
|
159 |
+
|
160 |
## License
|
161 |
|
162 |
<a rel="license" href="https://creativecommons.org/licenses/by/4.0/"><img alt="Attribution 4.0 International License" style="border-width:0" src="https://chriszabriskie.com/img/cc-by.png" width="100"/></a><br />This work is licensed under a <a rel="license" href="https://creativecommons.org/licenses/by/4.0/">Attribution 4.0 International License</a>.
|