Delete data_pre-processing.py
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data_pre-processing.py
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# -*- coding: utf-8 -*-
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"""
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Created on Mon Mar 4 09:26:03 2024
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@author: Bethany
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"""
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import pandas as pd
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# import data
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totals_data = pd.read_csv("https://files.digital.nhs.uk/22/D11E7E/HES_M9_2324_OPEN_DATA.csv")
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age_groups_data = pd.read_csv("https://files.digital.nhs.uk/D3/2CB1B4/HES_M9_2324_OPEN_DATA_AGE_GROUPS.csv")
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specialties_data = pd.read_csv("https://files.digital.nhs.uk/F2/461394/HES_M9_2324_OPEN_DATA_TREATMENT_SPECIALTY.csv")
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# change column names on totals_data to match other files
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totals_data = totals_data.rename(columns = {"APC_Finished_Consultant":"FCE",
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"APC_FCEs_with_a_procedure":"FCEs_With_Procedure",
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"APC_Ordinary_Episodes":"Ordinary_Admission_Episodes",
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"APC_Day_Case_Episodes":"FCE_DAY_CASES",
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"APC_Day_Case_Episodes_with_proc":"FCE_DAY_WITH_PROCEDURE",
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"APC_Finished_Admission_Episodes":"FAE",
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"APC_Emergency":"EMERGENCY",
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"Outpatient_Total_Appointments":"Total_Appointments",
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"Outpatient_Attended_Appointments":"Attended_Appointments",
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"Outpatient_DNA_Appointment":"DNA_Appointments",
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"Outpatient_Attendance_Type_1":"First_Attendance",
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"Outpatient_Attendance_Type_2":"Follow_Up_Attendance"}
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)
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# initialise empty dictionary
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HES_data= {"months":[]}
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# loop through previous dicts for all months
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for month in totals_data["CALENDAR_MONTH_END_DATE"][:69]:
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month_dict = {}
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month_dict.update({"month":list(totals_data["CALENDAR_MONTH_END_DATE"])[list(totals_data["CALENDAR_MONTH_END_DATE"]).index(month)]})
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month_dict.update({c:{} for c in age_groups_data.columns[5:]})
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for key in list(month_dict.keys())[1:]:
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# fill in sub-dictionaries with values from the three different csvs
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month_dict[key].update({"total":totals_data[key][0],
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"age_bands":[],
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"specialties":[]})
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for age in list(age_groups_data["Age_Band"].unique()):
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age_bands = {"age_band":age,
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key:age_groups_data[key][list(age_groups_data["Age_Band"].unique()).index(age)]}
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month_dict[key]["age_bands"].append(age_bands)
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for spec in list(specialties_data["TRETSPEF"].unique()):
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specialties = {"treatment_specialty_code":spec,
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"treatement_specialty_description":list(specialties_data["TRETSPEF_DESCRIPTION"].unique())[list(specialties_data["TRETSPEF"].unique()).index(spec)],
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key:specialties_data[key][list(specialties_data["TRETSPEF"].unique()).index(spec)]}
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month_dict[key]["specialties"].append(specialties)
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HES_data["months"].append(month_dict)
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