Rename README.md to mouse_gastrulation_card

README.md → mouse_gastrulation_card

@@ -10,22 +10,21 @@ size_categories:
 license: cc0-1.0
 ---
 ## Mouse Gastrulation scRNA-seq data
-100,000 single cells for single-cell RNAseq from whole mouse embryos during gastrulation and organogenesis, spanning days 6.5 to 8.5 of development, including embryonic and extraembryonic tissues. scRNA-seq libraries were subsequently generated using the 10X Genomics Chromium system (version 1 chemistry). 
 
-MISSING
-### Project information
+Across the animal kingdom, gastrulation represents a key developmental event during which embryonic pluripotent cells diversify into lineage-specific precursors that will generate the adult organism. 
 
+### Project information
 
-- **Source:** 
+- **Source:** scRNA-seq whole mouse embryos during gastrulation and organoienesis, spanning days 6.5 to 8.5 of development, including embryonic and extraembryonic tissues.  
 
 - **Raw file:**
   - [Array Express (E-MTAB-6967)](https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-6967)
 - **Species**
-  - Mus Musculus (Mouse)
+  - Mus musculus (Mouse)
 
 ### Assay details
 
-- **Assay:** 10X 5' transcription profiling
+- **Assay:** 10X Genomics Chromium system (version 1 chemistry)
 - **Number of Cells:** 139,331
 - **Number of Genes:** 29,452
 
@@ -48,19 +47,14 @@ adata.var['gene_name'] = adata.var_names.str.upper()
 
 ### Cell type annotation 
 
-There are three levels of cell annotation you can access in the data:
-
-| Annotation Granularity Level | Cell Type Names                                                                                                                                    |
+| Annotation| Cell Type Names                                                                                                                                    |
 |------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------|
+|`celltype` | Allantois, Anterior Primitive Streak, Blood progenitors 1, Blood progenitors 2, Cardiomyocytes, Caudal Mesoderm, Caudal epiblast, Caudal neurectoderm, Def. endoderm, Endothelium, Epiblast, Erythroid1, Erythroid2, Erythroid3, ExE ectoderm, ExE endoderm, ExE mesoderm, Forebrain/Midbrain/Hindbrain, Gut, Haematoendothelial progenitors, Intermediate mesoderm, Mesenchyme, Mixed mesoderm, NMP, Nascent mesoderm, Neural crest, Notochord, PGC, Paraxial mesoderm, Parietal endoderm, Pharyngeal mesoderm, Primitive Streak, Rostral neurectoderm, Somitic mesoderm, Spinal cord, Surface ectoderm, Visceral endoderm|
 
-MISSING
 
 
 ### License information
 
 Data was published in EMBL-EBI (Array Express), CC0. 
 
-MISSING
-
-### Note:
-This dataset contains one donor only, and it will be updated in the near future to contain more donors!
+This dataset was used in [Pijuan-Sala et al, Nature 2019](https://www.nature.com/articles/s41586-019-0933-9).