hlapp commited on
Commit
adeef31
1 Parent(s): 185926e

Clean table of figures and captions as TSV

Browse files

This was generated from the query figures-and-captions.sparql by running the following:
```
blazegraph-runner --journal=treatments.jnl select figures-and-captions.sparql figures-and-captions.tsv
```

.gitattributes CHANGED
@@ -53,3 +53,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  *.jpg filter=lfs diff=lfs merge=lfs -text
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  *.jpeg filter=lfs diff=lfs merge=lfs -text
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  *.webp filter=lfs diff=lfs merge=lfs -text
 
 
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  *.jpg filter=lfs diff=lfs merge=lfs -text
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  *.jpeg filter=lfs diff=lfs merge=lfs -text
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  *.webp filter=lfs diff=lfs merge=lfs -text
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+ figures-and-captions.tsv filter=lfs diff=lfs merge=lfs -text
figures-and-captions.sparql ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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+ PREFIX bibo: <http://purl.org/ontology/bibo/>
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+ PREFIX dc: <http://purl.org/dc/elements/1.1/>
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+ PREFIX fabio: <http://purl.org/spar/fabio/>
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+ PREFIX trt: <http://plazi.org/vocab/treatment#>
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+
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+ # This query obtains a table of figures with their image URLs and captions.
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+ # Each figure URI and figure representation URL should be unique in the
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+ # resulting table.
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+ # To provide an identifier that lends itself well to uniquely naming files
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+ # (e.g., the downloaded images) that can easily be back-referenced to this
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+ # table, an MD5-hash identifier is added as the first column.
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+ SELECT DISTINCT
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+ (MD5(STR(?figure)) AS ?figureID) # MD5 of figure URI as filename-friendly ID
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+ ?figure # figure URI
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+ (STR(?figureURL) AS ?figURL) # URL of the figure's representation
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+ (STR(?caption) AS ?figureCaption) # textual caption of the figure
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+ WHERE {
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+ ?treatment a trt:Treatment ; # Taxonomic treatment
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+ trt:publishedIn ?pub . # published in a publication
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+ ?pub fabio:hasPart ?figure . # which has a part
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+ ?figure a fabio:Figure ; # that is a figure
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+ dc:description ?caption ; # and has a caption
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+ fabio:hasRepresentation ?figureURL . # and a representation at a URL
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+ #
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+ # Consider only figures that have only one figure representation,
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+ # and only one caption.
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+ {
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+ SELECT ?figure
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+ WHERE {
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+ ?figure fabio:hasRepresentation ?fUrl .
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+ ?figure dc:description ?fCaption .
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+ FILTER (strLen(?fCaption) > 0)
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+ }
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+ GROUP BY ?figure
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+ HAVING (COUNT(DISTINCT ?fUrl) = 1 && COUNT(DISTINCT ?fCaption) = 1)
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+ }
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+ # Finally, disregard figures with an empty caption,
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+ # and figures that don't seem to be locatable online.
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+ FILTER (STRLEN(?caption) > 0 && ! strStarts(STR(?figure), "file:///"))
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+ }
figures-and-captions.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:b8d6e804b4a959a50cdcc71a97af7f282ad2ec8bd4321a1e0938f304961030c8
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+ size 122406336