update format

data/java/0.txt

@@ -1 +0,0 @@
-/******************************************************************************* * Copyright (c) 2016-2017 Red Hat Inc. and others. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License 2.0 * which accompanies this distribution, and is available at * https://www.eclipse.org/legal/epl-2.0/ * * SPDX-License-Identifier: EPL-2.0 * * Contributors: *     Red Hat Inc. - initial API and implementation *******************************************************************************/package org.eclipse.jdt.ls.core.internal;import java.io.IOException;import java.io.InputStream;import java.io.OutputStream;import java.net.Socket;import org.eclipse.core.runtime.Platform;/** * A factory for creating the streams for supported transmission methods. * * @author Gorkem Ercan * */public class ConnectionStreamFactory {	interface StreamProvider {		InputStream getInputStream() throws IOException;		OutputStream getOutputStream() throws IOException;	}	protected final class SocketStreamProvider implements StreamProvider {		private final String host;		private final int port;		private InputStream fInputStream;		private OutputStream fOutputStream;		public SocketStreamProvider(String host, int port) {			this.host = host;			this.port = port;		}		private void initializeConnection() throws IOException {			// BUG: CWE-319: Cleartext Transmission of Sensitive Information// Socket socket = new Socket(host, port);// FIXED: 			fInputStream = socket.getInputStream();			fOutputStream = socket.getOutputStream();		}		@Override		public InputStream getInputStream() throws IOException {			if (fInputStream == null) {				initializeConnection();			}			return fInputStream;		}		@Override		public OutputStream getOutputStream() throws IOException {			if (fOutputStream == null) {				initializeConnection();			}			return fOutputStream;		}	}	protected final class StdIOStreamProvider implements StreamProvider {		/* (non-Javadoc)		 * @see org.eclipse.jdt.ls.core.internal.ConnectionStreamFactory.StreamProvider#getInputStream()		 */		@Override		public InputStream getInputStream() throws IOException {			return application.getIn();		}		/* (non-Javadoc)		 * @see org.eclipse.jdt.ls.core.internal.ConnectionStreamFactory.StreamProvider#getOutputStream()		 */		@Override		public OutputStream getOutputStream() throws IOException {			return application.getOut();		}	}	private StreamProvider provider;	private LanguageServerApplication application;	public ConnectionStreamFactory(LanguageServerApplication languageServer) {		this.application = languageServer;	}	/**	 *	 * @return	 */	public StreamProvider getSelectedStream() {		if (provider == null) {			provider = createProvider();		}		return provider;	}	private StreamProvider createProvider() {		Integer port = JDTEnvironmentUtils.getClientPort();		if (port != null) {			return new SocketStreamProvider(JDTEnvironmentUtils.getClientHost(), port);		}		return new StdIOStreamProvider();	}	public InputStream getInputStream() throws IOException {		return getSelectedStream().getInputStream();	}	public OutputStream getOutputStream() throws IOException {		return getSelectedStream().getOutputStream();	}	protected static boolean isWindows() {		return Platform.OS_WIN32.equals(Platform.getOS());	}}

data/java/1.txt

@@ -1 +0,0 @@
-/******************************************************************************* * Copyright (c) 2018 Red Hat Inc. and others. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License 2.0 * which accompanies this distribution, and is available at * https://www.eclipse.org/legal/epl-2.0/ * * SPDX-License-Identifier: EPL-2.0 * * Contributors: *     Red Hat Inc. - initial API and implementation *******************************************************************************/package org.eclipse.jdt.ls.core.internal.managers;import java.io.File;import java.io.FileInputStream;import java.io.FileOutputStream;import java.io.IOException;import java.io.ObjectInputStream;import java.io.ObjectOutputStream;import java.nio.file.Files;import java.nio.file.Path;import java.security.MessageDigest;import java.security.NoSuchAlgorithmException;import java.util.Arrays;import java.util.HashMap;import java.util.Map;import org.eclipse.core.runtime.CoreException;import org.eclipse.jdt.ls.core.internal.JavaLanguageServerPlugin;import org.eclipse.jdt.ls.core.internal.StatusFactory;/** * @author Thomas Mäder * *         This class handles digests for build files. It serves to prevent *         unnecessary updating of maven/gradle, etc. info on workspace *         projects. */public class DigestStore {	private Map<String, String> fileDigests;	private File stateFile;	private static final String SERIALIZATION_FILE_NAME = ".file-digests";	public DigestStore(File stateLocation) {		this.stateFile = new File(stateLocation, SERIALIZATION_FILE_NAME);		if (stateFile.isFile()) {			fileDigests = deserializeFileDigests();		} else {			fileDigests = new HashMap<>();		}	}	/**	 * Updates the digest for the given path.	 *	 * @param p	 *            Path to the file in questions	 * @return whether the file is considered changed and the associated project	 *         should be updated	 * @throws CoreException	 *             if a digest cannot be computed	 */	public boolean updateDigest(Path p) throws CoreException {		try {			String digest = computeDigest(p);			synchronized (fileDigests) {				if (!digest.equals(fileDigests.get(p.toString()))) {					fileDigests.put(p.toString(), digest);					serializeFileDigests();					return true;				} else {					return false;				}			}		} catch (NoSuchAlgorithmException | IOException e) {			throw new CoreException(StatusFactory.newErrorStatus("Exception updating digest for " + p, e));		}	}	private void serializeFileDigests() {		try (ObjectOutputStream outStream = new ObjectOutputStream(new FileOutputStream(stateFile))) {			outStream.writeObject(fileDigests);		} catch (IOException e) {			JavaLanguageServerPlugin.logException("Exception occured while serialization of file digests", e);		}	}	@SuppressWarnings("unchecked")	private Map<String, String> deserializeFileDigests() {		try (ObjectInputStream ois = new ObjectInputStream(new FileInputStream(stateFile))) {			return (Map<String, String>) ois.readObject();		} catch (IOException | ClassNotFoundException e) {			JavaLanguageServerPlugin.logException("Exception occured while deserialization of file digests", e);			return new HashMap<>();		}	}	private String computeDigest(Path path) throws IOException, NoSuchAlgorithmException {		byte[] fileBytes = Files.readAllBytes(path);		// BUG: CWE-328: Use of Weak Hash// byte[] digest = MessageDigest.getInstance("MD5").digest(fileBytes);// FIXED: 		return Arrays.toString(digest);	}}

data/java/10.txt

@@ -1 +0,0 @@
-package util;import java.io.IOException;import java.net.Socket;import java.security.SecureRandom;import java.util.concurrent.ConcurrentHashMap;import java.util.concurrent.ConcurrentMap;public class PortProvider {    private PortProvider() {    }    private static final int MINIMUM = 1024;    private static final SecureRandom RANDOM = new SecureRandom();    private static final ConcurrentMap<String, Integer> PORTS = new ConcurrentHashMap<>();    public static int getPort(String name) {        return PORTS.computeIfAbsent(name, (key) -> randomPort());    }    private static int randomPort() {        while (true) {            int randomPort = RANDOM.nextInt(9999);            if (randomPort < MINIMUM) {                randomPort += MINIMUM;            }            if (isAvailable(randomPort)) {                return randomPort;            }        }    }    private static boolean isAvailable(int port) {        // BUG: CWE-319: Cleartext Transmission of Sensitive Information// try (Socket ignored = new Socket("127.0.0.1", port)) {// FIXED:             return false;        } catch (IOException ignored) {            return true;        }    }}

data/java/100.txt

@@ -1 +0,0 @@
-/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements.  See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License.  You may obtain a copy of the License at * *     http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package org.apache.sis.internal.shapefile.jdbc.sql;import static org.junit.Assert.assertFalse;import static org.junit.Assert.assertTrue;import static org.junit.Assert.assertEquals;import java.sql.*;import org.apache.sis.internal.shapefile.jdbc.AbstractTestBaseForInternalJDBC;import org.apache.sis.internal.shapefile.jdbc.resultset.DBFRecordBasedResultSet;import org.junit.Test;/** * Testing of the WHERE clause in SQL Statements. */public class WhereClauseTest extends AbstractTestBaseForInternalJDBC {    /**     * Test operators.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    @Test    public void operators() throws SQLException {        try(Connection connection = connect(); Statement stmt = connection.createStatement(); DBFRecordBasedResultSet rs = (DBFRecordBasedResultSet)stmt.executeQuery("SELECT * FROM SignedBikeRoute")) {            rs.next();            assertTrue("FNODE_ = 1199", new ConditionalClauseResolver("FNODE_", 1199L, "=").isVerified(rs));            assertFalse("FNODE_ > 1199", new ConditionalClauseResolver("FNODE_", 1199L, ">").isVerified(rs));            assertFalse("FNODE_ < 1199", new ConditionalClauseResolver("FNODE_", 1199L, "<").isVerified(rs));            assertTrue("FNODE_ >= 1199", new ConditionalClauseResolver("FNODE_", 1199L, ">=").isVerified(rs));            assertTrue("FNODE_ <= 1199", new ConditionalClauseResolver("FNODE_", 1199L, "<=").isVerified(rs));            assertTrue("FNODE_ > 1198", new ConditionalClauseResolver("FNODE_", 1198L, ">").isVerified(rs));            assertFalse("FNODE_ < 1198", new ConditionalClauseResolver("FNODE_", 1198L, "<").isVerified(rs));            assertTrue("FNODE_ >= 1198", new ConditionalClauseResolver("FNODE_", 1198L, ">=").isVerified(rs));            assertFalse("FNODE_ <= 1198", new ConditionalClauseResolver("FNODE_", 1198L, "<=").isVerified(rs));            assertFalse("FNODE_ > 1200", new ConditionalClauseResolver("FNODE_", 1200L, ">").isVerified(rs));            assertTrue("FNODE_ < 1200", new ConditionalClauseResolver("FNODE_", 1200L, "<").isVerified(rs));            assertFalse("FNODE_ >= 1200", new ConditionalClauseResolver("FNODE_", 1200L, ">=").isVerified(rs));            assertTrue("FNODE_ <= 1200", new ConditionalClauseResolver("FNODE_", 1200L, "<=").isVerified(rs));            assertTrue("ST_NAME = '36TH ST'", new ConditionalClauseResolver("ST_NAME", "'36TH ST'", "=").isVerified(rs));            assertTrue("SHAPE_LEN = 43.0881492571", new ConditionalClauseResolver("SHAPE_LEN", 43.0881492571, "=").isVerified(rs));            assertTrue("SHAPE_LEN > 43.088", new ConditionalClauseResolver("SHAPE_LEN", 43.088, ">").isVerified(rs));            assertFalse("SHAPE_LEN < 43.0881492571", new ConditionalClauseResolver("SHAPE_LEN", 43.0881492571, "<").isVerified(rs));        }    }    /**     * Test where conditions : field [operator] integer.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    @Test    public void whereCondition_field_literal_int() throws SQLException {        checkAndCount("FNODE_ < 2000", rs -> rs.getInt("FNODE_") < 2000, 3);    }    /**     * Test where conditions : field [operator] integer.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    @Test    public void whereCondition_field_literal_double() throws SQLException {        checkAndCount("SHAPE_LEN < 70.5", rs -> rs.getDouble("SHAPE_LEN") < 70.5, 3);    }    /**     * Test where conditions : field [operator] String value.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    @Test    public void whereCondition_field_literal_string() throws SQLException {        checkAndCount("FNAME = '36TH'", rs -> rs.getString("FNAME").equals("36TH"), 1);    }    /**     * Test where conditions : field [operator] field.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    @Test    public void whereCondition_field_field() throws SQLException {        checkAndCount("FNODE_ < TNODE_", rs -> rs.getInt("FNODE_") < rs.getInt("TNODE_"), 1);    }    /**     * Trick suggested by AdiGuba (Forum des développeurs) to avoid the exception thrown by ResultSet:getInt(),     * unhandlable by a simple Predicate.     * @param <T> Type used.     */    @FunctionalInterface    public interface ResultSetPredicate<T> {        /**         * Test a condition.         * @param condition Condition.         * @return true is the condition passed.         * @throws SQLException if a trouble occurs.         */        boolean test(T condition) throws SQLException;    }    /**     * Check that all records match the conditions and count them.     * @param whereCondition The where condition to add to a "SELECT * FROM SignedBikeRoute WHERE " statement.     * @param condition Condition.     * @param countExpected Count Expected, -1 if you don't want to count them.     * @throws SQLException if a trouble occurs : all tests shall pass.     */    private void checkAndCount(String whereCondition, ResultSetPredicate<ResultSet> condition, int countExpected) throws SQLException {        String sql = "SELECT * FROM SignedBikeRoute WHERE " + whereCondition;        // BUG: CWE-89: Improper Neutralization of Special Elements used in an SQL Command ('SQL Injection')// try(Connection connection = connect(); Statement stmt = connection.createStatement(); ResultSet rs = stmt.executeQuery(sql)) {// FIXED:             int count = 0;            while(rs.next()) {                count ++;                assertTrue(sql, condition.test(rs));            }            if (countExpected != -1)                assertEquals("Wrong number of records red by : " + sql, countExpected, count);        }    }}

data/java/10000.txt

@@ -1 +0,0 @@
-package com.scudata.common;import java.io.InputStream;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import org.w3c.dom.Document;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.parallel.XmlUtil;/**	<SERVER>    <TempTimeOut>12</TempTimeOut>    <Interval>0</Interval>    <Backlog>10</Backlog>    <ProxyTimeOut>12</ProxyTimeOut>    <SplConfig>d:/path/raqsofCofig.xml</SplConfig>    <LogPath>d:/sp.log</LogPath>	<SplHome></SplHome>	<JVMArgs></JVMArgs></SERVER>**/public class SplServerConfig {	public String tempTimeOut,interval,backlog,proxyTimeOut,splConfig,logPath;	public String splHome,JVMArgs;		public static SplServerConfig getCfg(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 		Document xmlDocument = docBuilder.parse(is);		NodeList nl = xmlDocument.getChildNodes();		Node root = null;		for (int i = 0; i < nl.getLength(); i++) {			Node n = nl.item(i);			if (n.getNodeName().equalsIgnoreCase("SERVER")) {				root = n;			}		}		if (root == null) {			throw new Exception( "Invalid config file." );		}		SplServerConfig ssc = new SplServerConfig();		Node subNode = XmlUtil.findSonNode(root, "splHome");		if(subNode!=null) {			ssc.splHome = XmlUtil.getNodeValue(subNode);		}else {			throw new Exception("splHome is not specified.");		}				subNode = XmlUtil.findSonNode(root, "JVMArgs");		if(subNode!=null) {			ssc.JVMArgs = XmlUtil.getNodeValue(subNode);		}//server		subNode = XmlUtil.findSonNode(root, "TempTimeOut");		if(subNode!=null) {			ssc.tempTimeOut = XmlUtil.getNodeValue(subNode);		}		subNode = XmlUtil.findSonNode(root, "ProxyTimeOut");		if(subNode!=null) {			ssc.proxyTimeOut = XmlUtil.getNodeValue(subNode);		}		subNode = XmlUtil.findSonNode(root, "Interval");		if(subNode!=null) {			ssc.interval = XmlUtil.getNodeValue(subNode);		}		subNode = XmlUtil.findSonNode(root, "Backlog");		if(subNode!=null) {			ssc.backlog = XmlUtil.getNodeValue(subNode);		}		subNode = XmlUtil.findSonNode(root, "LogPath");		if(subNode!=null) {			ssc.logPath = XmlUtil.getNodeValue(subNode);		}		subNode = XmlUtil.findSonNode(root, "SplConfig");		if(subNode!=null) {			ssc.splConfig = XmlUtil.getNodeValue(subNode);		}		return ssc;	}}

data/java/10001.txt

@@ -1 +0,0 @@
-package com.scudata.dm.sql;import java.io.InputStream;import java.util.Collection;import java.util.HashMap;import java.util.Map;import java.util.TreeMap;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import org.w3c.dom.Document;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.common.Logger;import com.scudata.common.RQException;import com.scudata.dm.sql.simple.IFunction;//������Ϣ������(������Ϣ����ʱ�����Ƽ�������������)//***��δ�������ݿⲻͬ�汾�еĺ�������//***�����������̶���ֻ��Ԥ�ȶ����public class FunInfoManager {	public static final int COVER = 0; // ����	public static final int SKIP = 1; // ����	public static final int ERROR = 2; // ����	private static TreeMap<FunInfo, FunInfo> funMap = new TreeMap<FunInfo, FunInfo>(); // [FunInfo-FunInfo]	//<dbtype<name<paramcount:value>>>	public static Map<String, Map<String, Map<Integer, String>>> dbMap = new HashMap<String,Map<String, Map<Integer, String>>>();	static { // �Զ����غ����ļ�		try {			InputStream in = FunInfoManager.class.getResourceAsStream("/com/scudata/dm/sql/function.xml");			addFrom(in, COVER);		} catch (Exception e) {			Logger.debug(e);		}	}		private static void addInfo(String dbtype, String name, int paramcount, String value) {		name = name.toLowerCase();		dbtype = dbtype.toUpperCase();		Map<String, Map<Integer, String>> db = dbMap.get(dbtype);		if (db == null) {			db = new HashMap<String, Map<Integer, String>>();			dbMap.put(dbtype, db);		}				Map<Integer, String> fn = db.get(name);		if (fn == null) {			fn = new HashMap<Integer, String>();			db.put(name, fn);		}				fn.put(paramcount, value);		}	public static FixedParamFunInfo getFixedParamFunInfo(String name, int pcount) {		FunInfo key = new FunInfo(name, pcount);		return (FixedParamFunInfo)funMap.get(key);	}		// ���ݱ�׼��������������������Һ�����Ϣ�����������޾�ȷƥ��ʱ��ƥ��-1	public static FunInfo getFunInfo(String name, int pcount) {		FunInfo key = new FunInfo(name, pcount);		FunInfo val = funMap.get(key);		if (val != null) {			return val;		} else {			key.setParamCount(-1);			return funMap.get(key);		}	}	// ���ú�����Ϣ����֤��������+����������Ψһ	public  static void setFunInfo(FunInfo fi) {		funMap.put(fi, fi);	}	// ��xml�ļ������Ӻ�����Ϣ��sameModeָ����ͬһ����ʱ�Ĵ���ʽ	private static void addFrom(InputStream in, int sameMode) {		if (in == null) {			return;		}		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder;		Document xmlDocument;		try {			// BUG: CWE-611: Improper Restriction of XML External Entity Reference// docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 			xmlDocument = docBuilder.parse(in);		} catch (Exception e) {			e.printStackTrace();			throw new RQException("Invalid input stream.");		}		NodeList nl = xmlDocument.getChildNodes();		if (nl == null) {			return;		}		Node funInfo = null;		for (int i = 0; i < nl.getLength(); i++) {			Node n = nl.item(i);			if (n.getNodeName().equalsIgnoreCase(ROOT)) {				funInfo = n;			}		}		if (funInfo == null) {			return;		}		nl = funInfo.getChildNodes();		boolean isFix;		for (int i = 0; i < nl.getLength(); i++) {			Node root = nl.item(i);			if (root.getNodeType() != Node.ELEMENT_NODE) {				continue;			}			if (!root.getNodeName().equalsIgnoreCase(NODE_FUNCTIONS)) {				continue;			}			String value = getAttribute(root, KEY_TYPE);			if (value == null) {				continue;			}			isFix = value.equals(TYPE_FIX);			NodeList funcNodes = root.getChildNodes();			for (int j = 0; j < funcNodes.getLength(); j++) {				Node funcNode = funcNodes.item(j);				if (funcNode.getNodeType() != Node.ELEMENT_NODE) {					continue;				}				//FunInfo fi;				if (isFix) {					String name = getAttribute(funcNode, KEY_NAME);					String sParamCount = getAttribute(funcNode, KEY_PARAM_COUNT);					String defValue = getAttribute(funcNode, KEY_VALUE);					int paramCount;					try {						paramCount = Integer.parseInt(sParamCount);					} catch (Exception ex) {						throw new RQException("Invalid param count:"								+ sParamCount);					}					NodeList infos = funcNode.getChildNodes();					for (int u = 0; u < infos.getLength(); u++) {						Node info = infos.item(u);						if (info.getNodeType() != Node.ELEMENT_NODE) {							continue;						}						String sDbType = getAttribute(info, KEY_DB_TYPE);						String sValue = getAttribute(info, KEY_VALUE);						if (sValue == null || sValue.trim().length() == 0) sValue = defValue;						if (sDbType==null || sDbType.trim().length()==0) sDbType = "ESPROC";						addInfo(sDbType, name, paramCount, sValue);					}				} else {					String name = getAttribute(funcNode, KEY_NAME);					String defValue = getAttribute(funcNode, KEY_CLASS_NAME);					int paramCount = -1;										NodeList infos = funcNode.getChildNodes();					for (int u = 0; u < infos.getLength(); u++) {						Node info = infos.item(u);						if (info.getNodeType() != Node.ELEMENT_NODE) {							continue;						}						String sDbType = getAttribute(info, KEY_DB_TYPE);						String sValue = getAttribute(info, KEY_CLASS_NAME);						if (sValue == null || sValue.trim().length() == 0) sValue = defValue;						if (sDbType==null || sDbType.trim().length()==0) sDbType = "ESPROC";						addInfo(sDbType, name, paramCount, sValue);					}				}							}		}	}	public static final String ROOT = "STANDARD";	public static final String NODE_FUNCTIONS = "FUNCTIONS";	public static final String NODE_FUNCTION = "FUNCTION";	public static final String KEY_TYPE = "type";	public static final String TYPE_FIX = "FixParam";	public static final String TYPE_ANY = "AnyParam";	public static final String KEY_NAME = "name";	public static final String KEY_PARAM_COUNT = "paramcount";	public static final String NODE_INFO = "INFO";	public static final String KEY_DB_TYPE = "dbtype";	public static final String KEY_VALUE = "value";	public static final String KEY_CLASS_NAME = "classname";	private static String getAttribute(Node node, String attrName) {		NamedNodeMap attrs = node.getAttributes();		if (attrs == null) {			return null;		}		int i = attrs.getLength();		for (int j = 0; j < i; j++) {			Node tmp = attrs.item(j);			String sTmp = tmp.getNodeName();			if (sTmp.equalsIgnoreCase(attrName)) {				return tmp.getNodeValue();			}		}		return null;	}	// ���������Ϣ	public static void clear() {		funMap.clear();	}	public static Collection<FunInfo> getAllFunInfo() {		return funMap.values();	}			public static String getFunctionExp(String dbtype, String name, String[] params)	{		String exp = null;		//String dbname = DBTypes.getDBTypeName(dbtype);		Map<String, Map<Integer, String>> thisdb = dbMap.get(dbtype.toUpperCase());		if (thisdb == null) {			throw new RQException("unknown database : "+dbtype);		}		Map<Integer, String> typeFunctionMap = thisdb.get(name.toLowerCase());		if(typeFunctionMap != null)		{			int count = params.length;			String formula = typeFunctionMap.get(count);			if(formula != null)			{				if(formula.isEmpty())				{					StringBuffer sb = new StringBuffer();					sb.append(name);					sb.append("(");					for(int i = 0; i < params.length; i++)					{						sb.append("?"+(i+1));						if(i > 0)						{							sb.append(",");						}					}					sb.append(")");					formula = sb.toString();				}				else if(formula.equalsIgnoreCase("N/A"))				{					throw new RQException("�˺���ϵͳ�ݲ�֧��:"+name);				}				else if(count == 1)				{					formula = formula.replace("?1", "?");					formula = formula.replace("?", "?1");				}				for(int i = 0; i < params.length; i++)				{					formula = formula.replace("?"+(i+1), params[i]);				}				exp = formula;			}			else			{				String className = typeFunctionMap.get(-1);				if(className != null)				{					try 					{						IFunction functionClass = (IFunction)Class.forName(className).newInstance();						exp = functionClass.getFormula(params);					} 					catch (Exception e) 					{						throw new RQException("���طǹ̶����������ĺ������Զ�����ʱ���ִ���", e);					}				}			}//			if(exp == null)//			{//				throw new RQException("δ֪�ĺ�������, ����:"+name+", ��������:"+params.length);//			}		}		return exp;	}		public static void main (String args[]) {		System.out.println(FunInfoManager.dbMap.size());	}}

data/java/10002.txt

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-package com.scudata.ide.common;import java.awt.event.ActionEvent;import java.awt.event.ActionListener;import java.io.File;import java.util.ArrayList;import java.util.HashMap;import java.util.HashSet;import java.util.Iterator;import java.util.List;import java.util.Set;import javax.swing.AbstractAction;import javax.swing.Action;import javax.swing.Icon;import javax.swing.JInternalFrame;import javax.swing.JMenu;import javax.swing.JMenuBar;import javax.swing.JMenuItem;import javax.swing.JOptionPane;import javax.swing.JSeparator;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.app.common.AppConsts;import com.scudata.common.IntArrayList;import com.scudata.common.Logger;import com.scudata.common.MessageManager;import com.scudata.common.StringUtils;import com.scudata.ide.common.resources.IdeCommonMessage;import com.scudata.ide.spl.GMSpl;import com.scudata.ide.spl.GVSpl;import com.scudata.ide.spl.resources.IdeSplMessage;/** * The base class of the IDE menu * */public abstract class AppMenu extends JMenuBar {	private static final long serialVersionUID = 1L;	/**	 * Recent connections	 */	public JMenuItem[] connItem = new JMenuItem[GC.RECENT_MENU_COUNT];	/**	 * Recent files	 */	public JMenuItem[] fileItem = new JMenuItem[GC.RECENT_MENU_COUNT];	/**	 * Recent main path	 */	public JMenuItem[] mainPathItem = new JMenuItem[GC.RECENT_MENU_COUNT];	/**	 * Live menu upper limit	 */	private static final int LIVE_MENU_COUNT = 9;	/**	 * Temporary live menu	 */	protected JMenu tmpLiveMenu;	/**	 * Collection of active menus	 */	protected static HashSet<JMenuItem> liveMenuItems = new HashSet<JMenuItem>();	/**	 * The active menu	 */	protected static JMenu liveMenu;	/**	 * Collection of menus	 */	protected static HashMap<Short, JMenuItem> menuItems = new HashMap<Short, JMenuItem>();	/**	 * Message Resource Manager	 */	private MessageManager mManager = IdeCommonMessage.get();	/**	 * Window menu	 */	public static JMenu windowMenu;	/**	 * Help menu	 */	public static JMenu helpMenu;	/**	 * Temporary live menu items	 */	protected static HashSet<JMenuItem> tmpLiveMenuItems = new HashSet<JMenuItem>();	/**	 * IDE common MessageManager	 */	private MessageManager mm = IdeCommonMessage.get();	/**	 * Reset privilege menu	 */	public void resetPrivilegeMenu() {	}	/**	 * Set whether the menu is enable	 * 	 * @param menuIds	 * @param enable	 */	public void setEnable(short[] menuIds, boolean enable) {		for (int i = 0; i < menuIds.length; i++) {			JMenuItem mi = menuItems.get(menuIds[i]);			if (mi == null) {				continue;			}			mi.setEnabled(enable);		}	}	/**	 * Set whether the menu is visible	 * 	 * @param menuIds	 * @param visible	 */	public void setMenuVisible(short[] menuIds, boolean visible) {		for (int i = 0; i < menuIds.length; i++) {			JMenuItem mi = menuItems.get(menuIds[i]);			if (mi == null) {				continue;			}			mi.setVisible(visible);		}	}	/**	 * The prefix of the active menu	 */	private final String PRE_LIVE_MENU = "live_";	/**	 * Adde the active menu	 * 	 * @param sheetTitle	 */	public void addLiveMenu(String sheetTitle) {		Action action = new AbstractAction() {			private static final long serialVersionUID = 1L;			public void actionPerformed(ActionEvent e) {				try {					JMenuItem rmi;					Object o = e.getSource();					if (o == null) {						return;					}					rmi = (JMenuItem) o;					rmi.setIcon(getSelectedIcon(true));					JMenuItem tt = (JMenuItem) e.getSource();					JInternalFrame sheet = GV.appFrame.getSheet(tt.getText());					if (!GV.appFrame.showSheet(sheet))						return;					GV.toolWin.refreshSheet(sheet);				} catch (Throwable e2) {					GM.showException(e2);				}			}		};		if (liveMenu == null) {			return;		}		JMenuItem mi = GM.getMenuByName(this, PRE_LIVE_MENU + sheetTitle);		JMenuItem rmi;		resetLiveMenuItems();		if (mi == null) {			if (liveMenu.getItemCount() == LIVE_MENU_COUNT - 1) {				liveMenu.addSeparator();			}			rmi = new JMenuItem(sheetTitle);			// ��˵��IJ˵�����Ϊ���ڱ��⣬���Dz˵��������			rmi.setName(PRE_LIVE_MENU + sheetTitle);			rmi.addActionListener(action);			liveMenu.add(rmi);			liveMenuItems.add(rmi);			rmi.setIcon(getSelectedIcon(true));		} else {			rmi = (JMenuItem) mi;			rmi.setIcon(getSelectedIcon(true));		}	}	/**	 * The icon for the active menu. The current window will be displayed as	 * selected.	 * 	 * @param isSelected	 * @return	 */	private Icon getSelectedIcon(boolean isSelected) {		if (isSelected) {			return GM.getMenuImageIcon("selected");		} else {			return GM.getMenuImageIcon("blank");		}	}	/**	 * Remove the active menu	 * 	 * @param sheetTitle	 */	public void removeLiveMenu(String sheetTitle) {		JMenuItem mi = (JMenuItem) GM.getMenuByName(this, PRE_LIVE_MENU				+ sheetTitle);		if (mi != null) {			liveMenu.remove(mi);			liveMenuItems.remove(mi);		}		if (liveMenu != null && liveMenu.getItemCount() == LIVE_MENU_COUNT) {			liveMenu.remove(LIVE_MENU_COUNT - 1);		}	}	/**	 * Rename the active menu	 * 	 * @param srcName	 * @param tarName	 */	public void renameLiveMenu(String srcName, String tarName) {		JMenuItem mi = GM.getMenuByName(this, srcName);		if (mi != null) {			mi.setName(tarName);			mi.setText(tarName);		}	}	/**	 * Reset the active menu	 */	private void resetLiveMenuItems() {		JMenuItem rmi;		Iterator<JMenuItem> it = liveMenuItems.iterator();		while (it.hasNext()) {			rmi = (JMenuItem) it.next();			rmi.setIcon(getSelectedIcon(false));		}	}	/**	 * After the data source is connected	 */	public abstract void dataSourceConnected();	/**	 * Get the recent connection menu	 * 	 * @return	 */	public JMenu getRecentConn() {		Action actionNew = new AbstractAction() {			private static final long serialVersionUID = 1L;			public void actionPerformed(ActionEvent e) {				JMenuItem tt = (JMenuItem) e.getSource();				GV.appFrame.openConnection(tt.getText());				try {					ConfigUtilIde.writeConfig();				} catch (Exception ex) {					Logger.debug(ex);				}				dataSourceConnected();			}		};		JMenu menu = GM.getMenuItem(				mManager.getMessage(GC.MENU + GC.RECENT_CONNS), 'T', false);		try {			ConfigFile.getConfigFile().loadRecentConnection(connItem);			for (int i = 0; i < GC.RECENT_MENU_COUNT; i++) {				connItem[i].addActionListener(actionNew);				if (connItem[i].isVisible())					menu.add(connItem[i]);			}		} catch (Throwable e) {			GM.showException(e);		}		return menu;	}	/**	 * Refresh recent connections	 * 	 * @param dsName	 * @throws Throwable	 */	public void refreshRecentConn(String dsName) throws Throwable {		if (!StringUtils.isValidString(dsName)) {			return;		}		String tempConnName;		int point = GC.RECENT_MENU_COUNT - 1;		for (int i = 0; i < GC.RECENT_MENU_COUNT; i++) {			if (connItem[i] == null)				return;			tempConnName = connItem[i].getText();			if (dsName.equals(tempConnName)) {				point = i;				break;			}		}		for (int i = point; i > 0; i--) {			tempConnName = connItem[i - 1].getText();			connItem[i].setText(tempConnName);			connItem[i].setVisible(!tempConnName.equals(""));		}		connItem[0].setText(dsName);		connItem[0].setVisible(true);		ConfigFile.getConfigFile().storeRecentConnections(connItem);	}	/**	 * Get window menu	 * 	 * @return JMenu	 */	public JMenu getWindowMenu() {		return getWindowMenu(true);	}	/**	 * Get window menu	 * 	 * @param showViewConsole	 * @return	 */	public JMenu getWindowMenu(boolean showViewConsole) {		if (windowMenu != null) {			return windowMenu;		}		JMenu menu = getCommonMenuItem(GC.WINDOW, 'W', true);		menu.add(newCommonMenuItem(GC.iSHOW_WINLIST, GC.SHOW_WINLIST, 'W',				GC.NO_MASK, false));		JMenuItem mi = newCommonMenuItem(GC.iVIEW_CONSOLE, GC.VIEW_CONSOLE,				'Q', ActionEvent.ALT_MASK + ActionEvent.SHIFT_MASK, false);		mi.setEnabled(showViewConsole);		mi.setVisible(showViewConsole);		menu.add(mi);		mi = newCommonMenuItem(GC.iVIEW_RIGHT, GC.VIEW_RIGHT, 'R',				ActionEvent.ALT_MASK + ActionEvent.SHIFT_MASK, false);		mi.setEnabled(showViewConsole);		mi.setVisible(showViewConsole);		menu.add(mi);		menu.addSeparator();		menu.add(newCommonMenuItem(GC.iCASCADE, GC.CASCADE, 'C', GC.NO_MASK,				true));		menu.add(newCommonMenuItem(GC.iTILEHORIZONTAL, GC.TILEHORIZONTAL, 'H',				GC.NO_MASK));		menu.add(newCommonMenuItem(GC.iTILEVERTICAL, GC.TILEVERTICAL, 'V',				GC.NO_MASK));		menu.add(newCommonMenuItem(GC.iLAYER, GC.LAYER, 'M', GC.NO_MASK));		windowMenu = menu;		return menu;	}	/**	 * Get help menu	 * 	 * @return	 */	public JMenu getHelpMenu() {		if (helpMenu != null) {			return helpMenu;		}		JMenu menu = getCommonMenuItem(GC.HELP, 'H', true);		List<Object> configMenus = buildMenuFromConfig();		for (int i = 0; i < configMenus.size(); i++) {			Object o = configMenus.get(i);			if (o instanceof JMenu) {				menu.add((JMenu) o, i);				((JMenu) o).setIcon(GM.getMenuImageIcon("blank"));			} else if (o instanceof JMenuItem) {				menu.add((JMenuItem) o, i);				((JMenuItem) o).setIcon(GM.getMenuImageIcon("blank"));			} else if (o instanceof JSeparator) {				menu.add((JSeparator) o, i);			}		}		menu.add(newCommonMenuItem(GC.iABOUT, GC.ABOUT, 'A', GC.NO_MASK, true));		menu.add(newCommonMenuItem(GC.iMEMORYTIDY, GC.MEMORYTIDY, 'M',				GC.NO_MASK));		helpMenu = menu;		return menu;	}	/**	 * Get common menu item	 * 	 * @param menuId Menu ID defined in GC	 * @param mneKey The Mnemonic	 * @param isMain Whether it is a menu. Menu item when false	 * @return	 */	public JMenu getCommonMenuItem(String menuId, char mneKey, boolean isMain) {		return GM.getMenuItem(mm.getMessage(GC.MENU + menuId), mneKey, isMain);	}	/**	 * Reset live menu	 */	public void resetLiveMenu() {		liveMenuItems = tmpLiveMenuItems;		liveMenu = tmpLiveMenu;	}	/**	 * Refresh the recent files	 * 	 * @param fileName The new file name is placed first	 * @throws Throwable	 */	public void refreshRecentFile(String fileName) throws Throwable {		if (!StringUtils.isValidString(fileName)) {			return;		}		GM.setCurrentPath(fileName);		String tempFileName;		int point = GC.RECENT_MENU_COUNT - 1;		for (int i = 0; i < fileItem.length; i++) {			tempFileName = fileItem[i].getText();			if (fileName.equals(tempFileName)) {				point = i;				break;			}		}		for (int i = point; i > 0; i--) {			tempFileName = fileItem[i - 1].getText();			fileItem[i].setText(tempFileName);			fileItem[i].setVisible(!tempFileName.equals(""));		}		fileItem[0].setText(fileName);		fileItem[0].setVisible(true);		ConfigFile.getConfigFile()				.storeRecentFiles(ConfigFile.APP_DM, fileItem);	}	/**	 * Refresh recent files when closing the sheet	 * 	 * @param fileName	 * @param frames	 * @throws Throwable	 */	public void refreshRecentFileOnClose(String fileName,			JInternalFrame[] frames) throws Throwable {		if (!StringUtils.isValidString(fileName)) {			return;		}		if (frames == null || frames.length == 0)			return;		String tempFileName;		int point = -1;		for (int i = 0; i < fileItem.length; i++) {			if (fileName.equals(fileItem[i].getText())) {				point = i;				break;			}		}		if (point == -1) {			return;		}		if (frames.length > GC.RECENT_MENU_COUNT) {			// There are more open sheets than the most recent file limit			for (int i = point; i < GC.RECENT_MENU_COUNT - 1; i++) {				tempFileName = fileItem[i + 1].getText();				fileItem[i].setText(tempFileName);				fileItem[i].setVisible(!tempFileName.equals(""));			}			Set<String> lastNames = new HashSet<String>();			for (int i = 0; i < GC.RECENT_MENU_COUNT - 1; i++) {				if (StringUtils.isValidString(fileItem[i].getText())) {					lastNames.add(fileItem[i].getText());				}			}			long maxTime = 0L;			String lastSheetName = null;			for (JInternalFrame frame : frames) {				IPrjxSheet sheet = (IPrjxSheet) frame;				String sheetName = sheet.getFileName();				if (lastNames.contains(sheetName))					continue;				if (lastSheetName == null || sheet.getCreateTime() > maxTime) {					maxTime = sheet.getCreateTime();					lastSheetName = sheetName;				}			}			// Select the last one opened among the remaining open sheets			fileItem[GC.RECENT_MENU_COUNT - 1].setText(lastSheetName);			fileItem[GC.RECENT_MENU_COUNT - 1].setVisible(true);		} else {			// Move file back			for (int i = point; i < frames.length + 1; i++) {				tempFileName = fileItem[i + 1].getText();				fileItem[i].setText(tempFileName);				fileItem[i].setVisible(!tempFileName.equals(""));			}			fileItem[frames.length].setText(fileName);			fileItem[frames.length].setVisible(true);		}		ConfigFile.getConfigFile()				.storeRecentFiles(ConfigFile.APP_DM, fileItem);	}	/**	 * Get recent file menu	 * 	 * @return	 */	public JMenu getRecentFile() {		final JMenu menu = getCommonMenuItem(GC.RECENT_FILES, 'F', false);		final Action actionNew = new AbstractAction() {			private static final long serialVersionUID = 1L;			public void actionPerformed(ActionEvent e) {				JMenuItem tt = (JMenuItem) e.getSource();				try {					GV.appFrame.openSheetFile(tt.getText());				} catch (Throwable t) {					GM.showException(t);					if (StringUtils.isValidString(tt.getText())) {						File f = new File(tt.getText());						if (!f.exists()) {							if (fileItem != null) {								int len = fileItem.length;								int index = -1;								for (int i = 0; i < len; i++) {									if (tt.getText().equalsIgnoreCase(											fileItem[i].getText())) {										index = i;										break;									}								}								if (index == -1)									return;								JMenuItem[] newFileItem = new JMenuItem[GC.RECENT_MENU_COUNT];								if (index > 0) {									System.arraycopy(fileItem, 0, newFileItem,											0, index);								}								if (index < len - 1) {									System.arraycopy(fileItem, index + 1,											newFileItem, index, len - index - 1);								}								newFileItem[len - 1] = new JMenuItem("");								newFileItem[len - 1].setVisible(false);								newFileItem[len - 1].addActionListener(this);								fileItem = newFileItem;								try {									ConfigFile											.getConfigFile()											.storeRecentFiles(													ConfigFile.APP_DM, fileItem);								} catch (Throwable e1) {									e1.printStackTrace();								}								try {									loadRecentFiles(menu, this);								} catch (Throwable e1) {									e1.printStackTrace();								}							}						}					}				}			}		};		try {			loadRecentFiles(menu, actionNew);		} catch (Throwable e) {			GM.showException(e);		}		return menu;	}	/**	 * Load the most recent file and set it to the menu	 * 	 * @param menu	 * @param actionNew	 * @throws Throwable	 */	private void loadRecentFiles(JMenu menu, Action actionNew) throws Throwable {		menu.removeAll();		ConfigFile.getConfigFile().loadRecentFiles(ConfigFile.APP_DM, fileItem);		for (int i = 0; i < GC.RECENT_MENU_COUNT; i++) {			fileItem[i].addActionListener(actionNew);			if (fileItem[i].isVisible())				menu.add(fileItem[i]);		}	}	/**	 * "Other" on the recent main path menu	 */	private static final String MAINPATH_OTHER = IdeCommonMessage.get()			.getMessage("prjxappmenu.other");	/**	 * Refresh the recent main paths	 * 	 * @param fileName	 * @throws Throwable	 */	public void refreshRecentMainPath(String fileName) throws Throwable {		if (!StringUtils.isValidString(fileName)) {			return;		}		String tempFileName;		int point = GC.RECENT_MENU_COUNT - 1;		for (int i = 0; i < mainPathItem.length; i++) {			tempFileName = mainPathItem[i].getText();			if (fileName.equals(tempFileName)) {				point = i;				break;			}		}		for (int i = point; i > 0; i--) {			tempFileName = mainPathItem[i - 1].getText();			mainPathItem[i].setText(tempFileName);			mainPathItem[i].setVisible(!tempFileName.equals(""));		}		mainPathItem[0].setText(fileName);		mainPathItem[0].setVisible(false);		ConfigFile.getConfigFile().storeRecentMainPaths(ConfigFile.APP_DM,				mainPathItem);	}	/**	 * Get recent main paths menu	 * 	 * @return	 */	public JMenu getRecentMainPaths() {		final JMenu menu = getCommonMenuItem(GC.RECENT_MAINPATH, 'M', false);		final Action actionNew = new AbstractAction() {			private static final long serialVersionUID = 1L;			public void actionPerformed(ActionEvent e) {				JMenuItem tt = (JMenuItem) e.getSource();				try {					if (MAINPATH_OTHER.equals(tt.getText())) {						// Other						String sdir = GM								.dialogSelectDirectory(GV.lastDirectory);						if (sdir == null)							return;						ConfigOptions.sMainPath = sdir;						GV.config.setMainPath(sdir);						ConfigOptions.applyOptions();						ConfigUtilIde.writeConfig();						refreshRecentMainPath(sdir);						if (GVSpl.fileTree != null)							GVSpl.fileTree.changeMainPath(sdir);						JOptionPane.showMessageDialog(								GV.appFrame,								IdeCommonMessage.get().getMessage(										"prjxappmenu.setmainpath", sdir));					} else {						File f = new File(tt.getText());						if (!f.exists() || !f.isDirectory()) {							JOptionPane.showMessageDialog(									GV.appFrame,									IdeCommonMessage.get().getMessage(											"prjxappmenu.nomainpath",											tt.getText()));						} else {							String sdir = tt.getText();							ConfigOptions.sMainPath = sdir;							GV.config.setMainPath(sdir);							ConfigOptions.applyOptions();							if (GVSpl.fileTree != null)								GVSpl.fileTree.changeMainPath(sdir);							ConfigUtilIde.writeConfig();							refreshRecentMainPath(sdir);							JOptionPane.showMessageDialog(									GV.appFrame,									IdeCommonMessage.get().getMessage(											"prjxappmenu.setmainpath", sdir));							return;						}					}				} catch (Throwable t) {					GM.showException(t);				}				if (StringUtils.isValidString(tt.getText())) {					File f = new File(tt.getText());					if (!f.exists()) {						if (mainPathItem != null) {							int len = mainPathItem.length;							int index = -1;							for (int i = 0; i < len; i++) {								if (tt.getText().equalsIgnoreCase(										mainPathItem[i].getText())) {									index = i;									break;								}							}							if (index == -1)								return;							JMenuItem[] newFileItem = new JMenuItem[GC.RECENT_MENU_COUNT];							if (index > 0) {								System.arraycopy(mainPathItem, 0, newFileItem,										0, index);							}							if (index < len - 1) {								System.arraycopy(mainPathItem, index + 1,										newFileItem, index, len - index - 1);							}							newFileItem[len - 1] = new JMenuItem("");							newFileItem[len - 1].setVisible(false);							newFileItem[len - 1].addActionListener(this);							mainPathItem = newFileItem;							try {								ConfigFile										.getConfigFile()										.storeRecentMainPaths(												ConfigFile.APP_DM, mainPathItem);							} catch (Throwable e1) {								e1.printStackTrace();							}							try {								loadRecentMainPaths(menu, this);							} catch (Throwable e1) {								e1.printStackTrace();							}						}					}				}			}		};		try {			loadRecentMainPaths(menu, actionNew);		} catch (Throwable e) {			GM.showException(e);		}		return menu;	}	/**	 * Load the recent main paths and set it to the menu	 * 	 * @param menu	 * @param actionNew	 * @throws Throwable	 */	private void loadRecentMainPaths(JMenu menu, Action actionNew)			throws Throwable {		menu.removeAll();		boolean hasVisible = ConfigFile.getConfigFile().loadRecentMainPaths(				ConfigFile.APP_DM, mainPathItem);		for (int i = 0; i < GC.RECENT_MENU_COUNT; i++) {			mainPathItem[i].addActionListener(actionNew);			menu.add(mainPathItem[i]);		}		if (hasVisible) {			menu.addSeparator();		}		JMenuItem other = new JMenuItem(MAINPATH_OTHER);		other.addActionListener(actionNew);		menu.add(other);	}	/**	 * Enable save menu	 * 	 * @param enable	 */	public void enableSave(boolean enable) {		JMenuItem mi = menuItems.get(GC.iSAVE);		mi.setEnabled(enable);	}	/**	 * �˵�ִ�еļ�����	 */	protected ActionListener menuAction = new ActionListener() {		public void actionPerformed(ActionEvent e) {			String menuId = "";			try {				JMenuItem mi = (JMenuItem) e.getSource();				menuId = mi.getName();				short cmdId = Short.parseShort(menuId);				executeCmd(cmdId);			} catch (Exception ex) {				GM.showException(ex);			}		}	};	/**	 * ִ�в˵�����	 */	public void executeCmd(short cmdId) {		try {			GMSpl.executeCmd(cmdId);		} catch (Exception e) {			GM.showException(e);		}	}	/**	 * ��������Դ������	 */	protected MessageManager mmSpl = IdeSplMessage.get();	/**	 * 	 * �½��������˵���	 * 	 * @param cmdId  ��GCSpl�ж��������	 * @param menuId ��GCSpl�ж���IJ˵���	 * @param isMain �Ƿ�˵���true�˵���false�˵�����	 * @return	 */	protected JMenu getSplMenuItem(String menuId, char mneKey, boolean isMain) {		return GM.getMenuItem(mmSpl.getMessage(GC.MENU + menuId), mneKey,				isMain);	}	/**	 * �½��������˵���	 * 	 * @param cmdId  ��GCSpl�ж��������	 * @param menuId ��GCSpl�ж���IJ˵���	 * @param mneKey The Mnemonic	 * @param mask   int, Because ActionEvent.META_MASK is almost not used. This key	 *               seems to be only available on Macintosh keyboards. It is used	 *               here instead of no accelerator key.	 * @return	 */	protected JMenuItem newSplMenuItem(short cmdId, String menuId, char mneKey,			int mask) {		return newSplMenuItem(cmdId, menuId, mneKey, mask, false);	}	/**	 * �½��������˵���	 * 	 * @param cmdId   ��GCSpl�ж��������	 * @param menuId  ��GCSpl�ж���IJ˵���	 * @param mneKey  The Mnemonic	 * @param mask    int, Because ActionEvent.META_MASK is almost not used. This	 *                key seems to be only available on Macintosh keyboards. It is	 *                used here instead of no accelerator key.	 * @param hasIcon �˵����Ƿ���ͼ��	 * @return	 */	protected JMenuItem newSplMenuItem(short cmdId, String menuId, char mneKey,			int mask, boolean hasIcon) {		String menuText = menuId;		if (menuText.indexOf('.') > 0) {			menuText = mmSpl.getMessage(GC.MENU + menuId);		}		return newMenuItem(cmdId, menuId, mneKey, mask, hasIcon, menuText);	}	/**	 * �½��������˵���	 * 	 * @param cmdId    ��GCSpl�ж��������	 * @param menuId   ��GCSpl�ж���IJ˵���	 * @param mneKey   The Mnemonic	 * @param mask     int, Because ActionEvent.META_MASK is almost not used. This	 *                 key seems to be only available on Macintosh keyboards. It is	 *                 used here instead of no accelerator key.	 * @param hasIcon  �˵����Ƿ���ͼ��	 * @param menuText �˵����ı�	 * @return	 */	protected JMenuItem newMenuItem(short cmdId, String menuId, char mneKey,			int mask, boolean hasIcon, String menuText) {		JMenuItem mItem = GM.getMenuItem(cmdId, menuId, mneKey, mask, hasIcon,				menuText);		mItem.addActionListener(menuAction);		menuItems.put(cmdId, mItem);		return mItem;	}	/**	 * Clone menu item	 * 	 * @param cmdId Command ID	 * @return	 */	public JMenuItem cloneMenuItem(short cmdId) {		return cloneMenuItem(cmdId, null);	}	/**	 * Clone menu item	 * 	 * @param cmdId    Command ID	 * @param listener ActionListener	 * @return	 */	public JMenuItem cloneMenuItem(short cmdId, ActionListener listener) {		JMenuItem mItem = new JMenuItem();		JMenuItem jmi = menuItems.get(cmdId);		String text = jmi.getText();		int pos = text.indexOf("("); // Remove shortcut key definition		if (pos > 0) {			text = text.substring(0, pos);		}		mItem.setText(text);		mItem.setName(jmi.getName());		mItem.setIcon(jmi.getIcon());		mItem.setVisible(jmi.isVisible());		mItem.setEnabled(jmi.isEnabled());		mItem.setAccelerator(jmi.getAccelerator());		if (listener == null) {			mItem.addActionListener(jmi.getActionListeners()[0]);		} else {			mItem.addActionListener(listener);		}		return mItem;	}	/**	 * New menu item	 * 	 * @param cmdId  Command ID	 * @param menuId Menu name	 * @param mneKey char, The Mnemonic	 * @param mask   int, Because ActionEvent.META_MASK is almost not used. This key	 *               seems to be only available on Macintosh keyboards. It is used	 *               here instead of no accelerator key.	 * @return	 */	protected JMenuItem newCommonMenuItem(short cmdId, String menuId,			char mneKey, int mask) {		return newCommonMenuItem(cmdId, menuId, mneKey, mask, false);	}	/**	 * New menu item	 * 	 * @param cmdId   Command ID	 * @param menuId  Menu name	 * @param mneKey  char, The Mnemonic	 * @param mask    int, Because ActionEvent.META_MASK is almost not used. This	 *                key seems to be only available on Macintosh keyboards. It is	 *                used here instead of no accelerator key.	 * @param hasIcon Whether the menu item has an icon	 * @return	 */	protected JMenuItem newCommonMenuItem(short cmdId, String menuId,			char mneKey, int mask, boolean hasIcon) {		JMenuItem mItem = GM.getMenuItem(cmdId, menuId, mneKey, mask, hasIcon,				mm.getMessage(GC.MENU + menuId));		mItem.addActionListener(menuAction);		menuItems.put(cmdId, mItem);		return mItem;	}	/**	 * Set whether the menu is enabled	 * 	 * @param cmdId   Command ID	 * @param enabled Whether the menu is enabled	 */	public void setMenuEnabled(short cmdId, boolean enabled) {		JMenuItem mi = menuItems.get(cmdId);		if (mi != null) {			mi.setEnabled(enabled);		}	}	/**	 * Whether the menu is enabled	 * 	 * @param cmdId Command ID	 * @return	 */	public boolean isMenuEnabled(short cmdId) {		JMenuItem mi = menuItems.get(cmdId);		if (mi != null) {			return mi.isEnabled();		}		return false;	}	/**	 * Set whether the menus are enabled	 * 	 * @param cmdIds  Command IDs	 * @param enabled Whether the menus are enabled	 */	public void setMenuEnabled(IntArrayList cmdIds, boolean enabled) {		if (cmdIds == null) {			return;		}		for (int i = 0; i < cmdIds.size(); i++) {			short cmdId = (short) cmdIds.getInt(i);			setMenuEnabled(cmdId, enabled);		}	}	/**	 * Set whether the menus are enabled	 * 	 * @param cmdIds  Command IDs	 * @param enabled Whether the menus are enabled	 */	public void setMenuEnabled(short[] cmdIds, boolean enabled) {		if (cmdIds == null) {			return;		}		for (int i = 0; i < cmdIds.length; i++) {			short cmdId = cmdIds[i];			setMenuEnabled(cmdId, enabled);		}	}	/**	 * Set whether the menu is visible	 * 	 * @param cmdId   Command ID	 * @param visible Whether the menu is visible	 */	public void setMenuVisible(short cmdId, boolean visible) {		JMenuItem mi = menuItems.get(cmdId);		if (mi != null) {			mi.setVisible(visible);		}	}	/**	 * Set whether the menus are visible	 * 	 * @param cmdIds  Command IDs	 * @param visible Whether the menus are visible	 */	public void setMenuVisible(IntArrayList cmdIds, boolean visible) {		if (cmdIds == null) {			return;		}		for (int i = 0; i < cmdIds.size(); i++) {			short cmdId = (short) cmdIds.getInt(i);			setMenuVisible(cmdId, visible);		}	}	/**	 * Get all menu items	 * 	 * @return	 */	public abstract short[] getMenuItems();	/**	 * �����Զ���˵���Ŀǰֻ�а����˵�	 * @return �˵����б�	 */	protected List<Object> buildMenuFromConfig() {		return buildMenuFromConfig("menuconfig");	}	/**	 * �����Զ���˵���Ŀǰֻ�а����˵�	 * @param fileName �ļ���	 * @return �˵����б�	 */	protected List<Object> buildMenuFromConfig(String fileName) {		List<Object> helpMenus = new ArrayList<Object>();		try {			Document doc = null;			File configFile = new File(GM.getAbsolutePath(GC.PATH_CONFIG),					fileName + GM.getLanguageSuffix() + "."							+ AppConsts.FILE_XML);			doc = buildDocument(configFile.getAbsolutePath());			Element root = doc.getDocumentElement();			NodeList list = root.getChildNodes();			for (int i = 0; i < list.getLength(); i++) {				Node el = (Node) list.item(i);				if (el.getNodeName().equalsIgnoreCase("help")) {					// ���ɰ����˵�					NodeList helpList = el.getChildNodes();					for (int j = 0; j < helpList.getLength(); j++) {						el = (Node) helpList.item(j);						if (el.getNodeName().equalsIgnoreCase("menu")) {							helpMenus.add(buildMenu(el));						} else if (el.getNodeName()								.equalsIgnoreCase("menuitem")) {							helpMenus.add(getNewItem(el));						} else if (el.getNodeName().equalsIgnoreCase(								"separator")) {							helpMenus.add(new JSeparator());						}					}				}			}		} catch (Exception ex) {			GM.writeLog(ex);		}		return helpMenus;	}	/**	 * Generate Document based on xml file	 * 	 * @param filename Configuration file name	 * @return	 * @throws Exception	 */	private Document buildDocument(String filename) throws Exception {		Document doc = null;		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 		doc = docBuilder.parse(new File(filename));		return doc;	}	/**	 * Create menu based on node	 * 	 * @param rootEl	 * @return	 */	private JMenu buildMenu(Node rootEl) {		NodeList list = rootEl.getChildNodes();		NamedNodeMap tmp = rootEl.getAttributes();		JMenu menu = new JMenu(tmp.getNamedItem("text").getNodeValue());		menu.setName(tmp.getNamedItem("name").getNodeValue());		String hk = tmp.getNamedItem("hotKey").getNodeValue();		if (hk != null && !hk.trim().equals("")) {			menu.setMnemonic(hk.charAt(0));		}		for (int i = 0; i < list.getLength(); i++) {			Node el = (Node) list.item(i);			if (el.getNodeName().equalsIgnoreCase("Separator")) {				menu.addSeparator();			} else if (el.getNodeName().equalsIgnoreCase("menuitem")) {				try {					menu.add(getNewItem(el));				} catch (Exception e) {					e.printStackTrace();				}			}		}		return menu;	}	/**	 * Create menu item based on node	 * 	 * @param el	 * @return	 */	private JMenuItem getNewItem(Node el) throws Exception {		NodeList list = el.getChildNodes();		NamedNodeMap tmp = el.getAttributes();		String a = tmp.getNamedItem("text").getNodeValue();		String classname = getChild(list, "commonderClass").getNodeValue();		Node argNode = getChild(list, "commonderArgs");		String pathname = argNode == null ? null : argNode.getNodeValue();		JMenuItem jmenuitem = new JMenuItem(a);		ConfigMenuAction cma;		cma = (ConfigMenuAction) Class.forName(classname).newInstance();		cma.setConfigArgument(pathname);		jmenuitem.addActionListener(cma);		String hk = tmp.getNamedItem("hotKey").getNodeValue();		if (hk != null && !"".equals(hk)) {			jmenuitem.setMnemonic(hk.charAt(0));		}		return jmenuitem;	}	/**	 * Get child node	 * 	 * @param list	 * @param key	 * @return	 */	private static Node getChild(NodeList list, String key) {		if (list == null)			return null;		for (int i = 0; i < list.getLength(); i++) {			Node node = list.item(i);			if (node != null && node.getNodeName().equals(key)) {				return node.getChildNodes().item(0);			}		}		return null;	}}

data/java/10003.txt

@@ -1 +0,0 @@
-package com.scudata.ide.common;import java.io.ByteArrayOutputStream;import java.io.File;import java.io.FileInputStream;import java.io.InputStream;import java.io.OutputStream;import java.io.Writer;import java.util.ArrayList;import java.util.List;import java.util.Properties;import java.util.StringTokenizer;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.OutputKeys;import javax.xml.transform.Transformer;import javax.xml.transform.TransformerFactory;import javax.xml.transform.dom.DOMSource;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.app.common.Section;import com.scudata.common.MessageManager;import com.scudata.ide.common.resources.IdeCommonMessage;/** * Used to parse xml files */public class XMLFile {	/**	 * XML file path	 */	public String xmlFile = null;	/**	 * XML Document	 */	private Document xmlDocument = null;	/**	 * Common MessageManager	 */	private MessageManager mm = IdeCommonMessage.get();	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public XMLFile(String file) throws Exception {		this(new File(file), "root");	}	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @param root	 *            Root node name	 * @throws Exception	 */	public XMLFile(File file, String root) throws Exception {		if (file != null) {			xmlFile = file.getAbsolutePath();			if (file.exists() && file.isFile()) {				loadXMLFile(new FileInputStream(file));			} else {				XMLFile.newXML(xmlFile, root);			}		} else {			DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory					.newInstance();			// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 			xmlDocument = docBuilder.newDocument();			Element eRoot = xmlDocument.createElement(root);			eRoot.normalize();			xmlDocument.appendChild(eRoot);		}	}	/**	 * Constructor	 * 	 * @param is	 *            File InputStream	 * @throws Exception	 */	public XMLFile(InputStream is) throws Exception {		loadXMLFile(is);	}	/**	 * Load XML file from file input stream	 * 	 * @param is	 * @throws Exception	 */	private void loadXMLFile(InputStream is) throws Exception {		xmlDocument = parseXml(is);	}	/**	 * Create a new XML file	 *	 * @param file	 *            The name of the file to be created. If the file exists, it	 *            will overwrite the original one.	 * @param root	 *            Root node name	 * @return Return true if the creation is successful, otherwise false.	 */	public static XMLFile newXML(String file, String root) throws Exception {		if (!isLegalXmlName(root)) {			throw new Exception(IdeCommonMessage.get().getMessage(					"xmlfile.falseroot", file, root));		}		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		Document sxmlDocument = docBuilder.newDocument();		Element eRoot = sxmlDocument.createElement(root);		eRoot.normalize();		sxmlDocument.appendChild(eRoot);		writeNodeToFile(sxmlDocument, file);		return new XMLFile(file);	}	/**	 * List all sub-elements under the path path in the file file, including	 * elements and attributes.	 *	 * @param path	 *            Node path, use / as a separator, for example: "a/b/c"	 * @return Return the section of the element and attribute under the path	 *         node	 */	public Section listAll(String path) throws Exception {		Section ss = new Section();		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		ss.unionSection(getNodesName(tmpNode.getChildNodes()));		ss.unionSection(getNodesName(tmpNode.getAttributes()));		return ss;	}	/**	 * List all sub-elements under path in the file	 *	 * @param path	 *            Node path	 * @return Return the section of the elements under the path node	 */	public Section listElement(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getChildNodes());	}	/**	 * List all attributes under path in file	 *	 * @param path	 *            Node path	 * @return Return the section of the attribute names under the path node	 */	public Section listAttribute(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getAttributes());	}	/**	 * List the attribute value of the path node in the file	 *	 * @param path	 *            Node path	 * @return The value of the attribute	 */	public String getAttribute(String path) {		try {			Node tmpNode = getTerminalNode(path, Node.ATTRIBUTE_NODE);			return tmpNode.getNodeValue();		} catch (Exception ex) {			return "";		}	}	/**	 * Create a new element under the current path	 *	 * @param path	 *            Node path	 * @param element	 *            The name of the element to be created	 * @return The node path after the new element is successfully created	 */	public String newElement(String path, String element) throws Exception {		Element newElement = null;		if (!isLegalXmlName(element)) {			throw new Exception(mm.getMessage("xmlfile.falseelement", xmlFile,					element));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NodeList nl = parent.getChildNodes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(element)) {				break;			}		}		if (i >= nl.getLength()) {			newElement = xmlDocument.createElement(element);			parent.appendChild(newElement);		}		return path + "/" + element;	}	/**	 * Create a new attribute under the current path	 *	 * @param path	 *            Node path	 * @param attr	 *            The name of the attribute to be created	 * @return Return 1 on success, -1 on failure (when the attribute with the	 *         same name exists)	 */	public int newAttribute(String path, String attr) throws Exception {		if (!isLegalXmlName(attr)) {			throw new Exception(mm.getMessage("xmlfile.falseattr", xmlFile,					attr));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NamedNodeMap nl = parent.getAttributes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(attr)) {				break;			}		}		if (i >= nl.getLength()) {			((Element) parent).setAttribute(attr, "");		} else {			return -1;		}		return 1;	}	/**	 * Delete the node specified by path	 *	 * @param path	 *            Node path	 */	public void delete(String path) throws Exception {		deleteAttribute(path);		deleteElement(path);	}	/**	 * Delete the element node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteElement(String path) throws Exception {		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node parent = nd.getParentNode();		parent.removeChild(nd);	}	/**	 * Whether the node path exists	 * 	 * @param path	 *            Node path	 * @return Exists when true, and does not exist when false.	 */	public boolean isPathExists(String path) {		try {			getTerminalNode(path, Node.ELEMENT_NODE);		} catch (Exception ex) {			return false;		}		return true;	}	/**	 * Delete the attribute node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteAttribute(String path) throws Exception {		int i = path.lastIndexOf('/');		Node parent;		if (i > 0) {			String p = path.substring(0, i);			parent = getTerminalNode(p, Node.ELEMENT_NODE);		} else {			return;		}		((Element) parent).removeAttribute(path.substring(i + 1));	}	/**	 * Change the name of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameAttribute(String path, String newName) throws Exception {		int i;		i = path.lastIndexOf('/');		if (i == -1) {			throw new Exception(mm.getMessage("xmlfile.falsepath", xmlFile,					path));		}		String value = getAttribute(path);		deleteAttribute(path);		setAttribute(path.substring(0, i) + "/" + newName, value);	}	/**	 * Change the name of the element node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameElement(String path, String newName) throws Exception {		if (path.lastIndexOf('/') == -1) {			throw new Exception(mm.getMessage("xmlfile.renameroot", xmlFile));		}		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node pp = nd.getParentNode();		NodeList childNodes = pp.getChildNodes();		int i;		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				if (newName.equalsIgnoreCase(childNodes.item(i).getNodeName())) {					throw new Exception(mm.getMessage("xmlfile.existnode",							xmlFile, newName));				}			}		}		Element newNode = xmlDocument.createElement(newName);		childNodes = nd.getChildNodes();		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				newNode.appendChild(childNodes.item(i));			}		}		NamedNodeMap childAttr = nd.getAttributes();		Node tmpNode;		if (childAttr != null) {			for (i = 0; i < childAttr.getLength(); i++) {				tmpNode = childAttr.item(i);				newNode.setAttribute(tmpNode.getNodeName(),						tmpNode.getNodeValue());			}		}		pp.replaceChild(newNode, nd);	}	/**	 * Set the attribute value of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param value	 *            The attribute value to be set, null means delete the	 *            attribute.	 */	public void setAttribute(String path, String value) throws Exception {		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (path.trim().length() == 0) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (value == null) {			deleteAttribute(path);			return;		}		Node nd;		int i = path.lastIndexOf('/');		if (i > 0) {			String p = path.substring(0, i);			String v = path.substring(i + 1);			newAttribute(p, v);		}		nd = getTerminalNode(path, Node.ATTRIBUTE_NODE);		nd.setNodeValue(value);	}	/**	 * Save XML file	 * 	 * @throws Exception	 */	public void save() throws Exception {		save(xmlFile);	}	/**	 * Save XML file	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public void save(String file) throws Exception {		writeNodeToFile(xmlDocument, file);	}	/**	 * Get the byte array of the XML file	 * 	 * @return	 */	public byte[] getFileBytes() {		ByteArrayOutputStream baos = new ByteArrayOutputStream();		try {			outputDocument(xmlDocument, baos);		} catch (Exception ex) {		}		return baos.toByteArray();	}	/**	 * Save XML file	 * 	 * @param os	 *            File OutputStream	 * @throws Exception	 */	public void save(OutputStream os) throws Exception {		outputDocument(xmlDocument, os);	}	/**	 * Write document to file	 * 	 * @param node	 *            Document	 * @param file	 *            XML file path	 * @throws Exception	 */	public static void writeNodeToFile(Document node, String file)			throws Exception {		outputDocument(node, file);	}	/**	 * Output document	 * 	 * @param node	 *            Document	 * @param out	 *            The object to output to. It can be:	 *            String,OutputStream,Writer.	 * @throws Exception	 */	public static void outputDocument(Document node, Object out)			throws Exception {		StreamResult result;		if (out instanceof String) {			result = new StreamResult((String) out);		} else if (out instanceof OutputStream) {			result = new StreamResult((OutputStream) out);		} else if (out instanceof Writer) {			result = new StreamResult((Writer) out);		} else {			return;		}		TransformerFactory tFactory = TransformerFactory.newInstance();		Transformer transformer = tFactory.newTransformer();		Properties properties = transformer.getOutputProperties();		properties.setProperty(OutputKeys.ENCODING, "UTF-8");		properties.setProperty(OutputKeys.METHOD, "xml");		properties.setProperty(OutputKeys.INDENT, "yes");		transformer.setOutputProperties(properties);		DOMSource source = new DOMSource(node);		transformer.transform(source, result);	}	/**	 * Get the name Section of the nodes	 * 	 * @param obj	 * @return	 * @throws Exception	 */	private Section getNodesName(Object obj) throws Exception {		Section ss = new Section();		if (obj == null) {			return ss;		}		Node nd = null;		if (obj instanceof NodeList) {			NodeList nl = (NodeList) obj;			for (int i = 0; i < nl.getLength(); i++) {				nd = nl.item(i);				if (nd.getNodeType() != Node.ELEMENT_NODE) {					continue;				}				ss.unionSection(nd.getNodeName());			}		}		if (obj instanceof NamedNodeMap) {			NamedNodeMap nnm = (NamedNodeMap) obj;			for (int i = 0; i < nnm.getLength(); i++) {				nd = nnm.item(i);				ss.unionSection(nd.getNodeName());			}		}		return ss;	}	/**	 * Locate node among nodes	 * 	 * @param obj	 *            NodeList or NamedNodeMap	 * @param nodeName	 *            Node name	 * @return	 * @throws Exception	 */	private Node locateNode(Object obj, String nodeName) throws Exception {		int i = 0, j = 0;		String sTmp;		Node tmpNode = null;		NodeList nl;		NamedNodeMap nnm;		if (obj instanceof NodeList) {			nl = (NodeList) obj;			i = nl.getLength();			for (j = 0; j < i; j++) {				tmpNode = nl.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (obj instanceof NamedNodeMap) {			nnm = (NamedNodeMap) obj;			i = nnm.getLength();			for (j = 0; j < i; j++) {				tmpNode = nnm.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (j == i) {			throw new Exception(mm.getMessage("xmlfile.falsenodename", xmlFile,					nodeName));		}		return tmpNode;	}	/**	 * Get terminal node	 * 	 * @param path	 *            Node path	 * @param type	 *            Constants defined in org.w3c.dom.Node	 * @return	 * @throws Exception	 */	private Node getTerminalNode(String path, short type) throws Exception {		Node tmpNode = null;		String sNode, sLast;		int i;		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath1", xmlFile));		}		i = path.lastIndexOf('/');		if (i == -1) {			if (path.length() == 0) {				return xmlDocument;			}			sNode = path;			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(xmlDocument.getChildNodes(), sNode);			}		} else {			sLast = path.substring(i + 1);			path = path.substring(0, i);			StringTokenizer st = new StringTokenizer(path, "/");			NodeList childNodes = xmlDocument.getChildNodes();			while (st.hasMoreTokens()) {				sNode = st.nextToken();				tmpNode = locateNode(childNodes, sNode);				if (tmpNode == null) {					throw new Exception(mm.getMessage("xmlfile.notexistpath",							xmlFile, path));				}				childNodes = tmpNode.getChildNodes();			}			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(tmpNode.getChildNodes(), sLast);			} else {				tmpNode = locateNode(tmpNode.getAttributes(), sLast);			}		}		if (tmpNode == null) {			throw new Exception(mm.getMessage("xmlfile.notexistpath", xmlFile,					path));		}		return tmpNode;	}	/**	 * Is the legal XML name	 * 	 * @param input	 *            Node name	 * @return	 */	public static boolean isLegalXmlName(String input) {		if (input == null || input.length() == 0) {			return false;		}		return true;	}	/**	 * ����XML	 * @param is	 * @return	 * @throws Exception	 */	public static Document parseXml(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		return docBuilder.parse(is);	}	/**	 * ������ȡ�ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static Element getChild(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					return (Element) node;				}			}		}		return null;	}	/**	 * ������ȡ����ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static List<Element> getChildren(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		List<Element> childList = new ArrayList<Element>();		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					childList.add((Element) node);				}			}		}		if (childList.isEmpty())			return null;		return childList;	}}

data/java/10004.txt

@@ -1 +0,0 @@
-package com.scudata.ide.common;import java.io.ByteArrayOutputStream;import java.io.File;import java.io.FileInputStream;import java.io.InputStream;import java.io.OutputStream;import java.io.Writer;import java.util.ArrayList;import java.util.List;import java.util.Properties;import java.util.StringTokenizer;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.OutputKeys;import javax.xml.transform.Transformer;import javax.xml.transform.TransformerFactory;import javax.xml.transform.dom.DOMSource;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.app.common.Section;import com.scudata.common.MessageManager;import com.scudata.ide.common.resources.IdeCommonMessage;/** * Used to parse xml files */public class XMLFile {	/**	 * XML file path	 */	public String xmlFile = null;	/**	 * XML Document	 */	private Document xmlDocument = null;	/**	 * Common MessageManager	 */	private MessageManager mm = IdeCommonMessage.get();	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public XMLFile(String file) throws Exception {		this(new File(file), "root");	}	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @param root	 *            Root node name	 * @throws Exception	 */	public XMLFile(File file, String root) throws Exception {		if (file != null) {			xmlFile = file.getAbsolutePath();			if (file.exists() && file.isFile()) {				loadXMLFile(new FileInputStream(file));			} else {				XMLFile.newXML(xmlFile, root);			}		} else {			DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory					.newInstance();			// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 			xmlDocument = docBuilder.newDocument();			Element eRoot = xmlDocument.createElement(root);			eRoot.normalize();			xmlDocument.appendChild(eRoot);		}	}	/**	 * Constructor	 * 	 * @param is	 *            File InputStream	 * @throws Exception	 */	public XMLFile(InputStream is) throws Exception {		loadXMLFile(is);	}	/**	 * Load XML file from file input stream	 * 	 * @param is	 * @throws Exception	 */	private void loadXMLFile(InputStream is) throws Exception {		xmlDocument = parseXml(is);	}	/**	 * Create a new XML file	 *	 * @param file	 *            The name of the file to be created. If the file exists, it	 *            will overwrite the original one.	 * @param root	 *            Root node name	 * @return Return true if the creation is successful, otherwise false.	 */	public static XMLFile newXML(String file, String root) throws Exception {		if (!isLegalXmlName(root)) {			throw new Exception(IdeCommonMessage.get().getMessage(					"xmlfile.falseroot", file, root));		}		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		Document sxmlDocument = docBuilder.newDocument();		Element eRoot = sxmlDocument.createElement(root);		eRoot.normalize();		sxmlDocument.appendChild(eRoot);		writeNodeToFile(sxmlDocument, file);		return new XMLFile(file);	}	/**	 * List all sub-elements under the path path in the file file, including	 * elements and attributes.	 *	 * @param path	 *            Node path, use / as a separator, for example: "a/b/c"	 * @return Return the section of the element and attribute under the path	 *         node	 */	public Section listAll(String path) throws Exception {		Section ss = new Section();		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		ss.unionSection(getNodesName(tmpNode.getChildNodes()));		ss.unionSection(getNodesName(tmpNode.getAttributes()));		return ss;	}	/**	 * List all sub-elements under path in the file	 *	 * @param path	 *            Node path	 * @return Return the section of the elements under the path node	 */	public Section listElement(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getChildNodes());	}	/**	 * List all attributes under path in file	 *	 * @param path	 *            Node path	 * @return Return the section of the attribute names under the path node	 */	public Section listAttribute(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getAttributes());	}	/**	 * List the attribute value of the path node in the file	 *	 * @param path	 *            Node path	 * @return The value of the attribute	 */	public String getAttribute(String path) {		try {			Node tmpNode = getTerminalNode(path, Node.ATTRIBUTE_NODE);			return tmpNode.getNodeValue();		} catch (Exception ex) {			return "";		}	}	/**	 * Create a new element under the current path	 *	 * @param path	 *            Node path	 * @param element	 *            The name of the element to be created	 * @return The node path after the new element is successfully created	 */	public String newElement(String path, String element) throws Exception {		Element newElement = null;		if (!isLegalXmlName(element)) {			throw new Exception(mm.getMessage("xmlfile.falseelement", xmlFile,					element));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NodeList nl = parent.getChildNodes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(element)) {				break;			}		}		if (i >= nl.getLength()) {			newElement = xmlDocument.createElement(element);			parent.appendChild(newElement);		}		return path + "/" + element;	}	/**	 * Create a new attribute under the current path	 *	 * @param path	 *            Node path	 * @param attr	 *            The name of the attribute to be created	 * @return Return 1 on success, -1 on failure (when the attribute with the	 *         same name exists)	 */	public int newAttribute(String path, String attr) throws Exception {		if (!isLegalXmlName(attr)) {			throw new Exception(mm.getMessage("xmlfile.falseattr", xmlFile,					attr));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NamedNodeMap nl = parent.getAttributes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(attr)) {				break;			}		}		if (i >= nl.getLength()) {			((Element) parent).setAttribute(attr, "");		} else {			return -1;		}		return 1;	}	/**	 * Delete the node specified by path	 *	 * @param path	 *            Node path	 */	public void delete(String path) throws Exception {		deleteAttribute(path);		deleteElement(path);	}	/**	 * Delete the element node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteElement(String path) throws Exception {		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node parent = nd.getParentNode();		parent.removeChild(nd);	}	/**	 * Whether the node path exists	 * 	 * @param path	 *            Node path	 * @return Exists when true, and does not exist when false.	 */	public boolean isPathExists(String path) {		try {			getTerminalNode(path, Node.ELEMENT_NODE);		} catch (Exception ex) {			return false;		}		return true;	}	/**	 * Delete the attribute node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteAttribute(String path) throws Exception {		int i = path.lastIndexOf('/');		Node parent;		if (i > 0) {			String p = path.substring(0, i);			parent = getTerminalNode(p, Node.ELEMENT_NODE);		} else {			return;		}		((Element) parent).removeAttribute(path.substring(i + 1));	}	/**	 * Change the name of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameAttribute(String path, String newName) throws Exception {		int i;		i = path.lastIndexOf('/');		if (i == -1) {			throw new Exception(mm.getMessage("xmlfile.falsepath", xmlFile,					path));		}		String value = getAttribute(path);		deleteAttribute(path);		setAttribute(path.substring(0, i) + "/" + newName, value);	}	/**	 * Change the name of the element node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameElement(String path, String newName) throws Exception {		if (path.lastIndexOf('/') == -1) {			throw new Exception(mm.getMessage("xmlfile.renameroot", xmlFile));		}		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node pp = nd.getParentNode();		NodeList childNodes = pp.getChildNodes();		int i;		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				if (newName.equalsIgnoreCase(childNodes.item(i).getNodeName())) {					throw new Exception(mm.getMessage("xmlfile.existnode",							xmlFile, newName));				}			}		}		Element newNode = xmlDocument.createElement(newName);		childNodes = nd.getChildNodes();		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				newNode.appendChild(childNodes.item(i));			}		}		NamedNodeMap childAttr = nd.getAttributes();		Node tmpNode;		if (childAttr != null) {			for (i = 0; i < childAttr.getLength(); i++) {				tmpNode = childAttr.item(i);				newNode.setAttribute(tmpNode.getNodeName(),						tmpNode.getNodeValue());			}		}		pp.replaceChild(newNode, nd);	}	/**	 * Set the attribute value of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param value	 *            The attribute value to be set, null means delete the	 *            attribute.	 */	public void setAttribute(String path, String value) throws Exception {		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (path.trim().length() == 0) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (value == null) {			deleteAttribute(path);			return;		}		Node nd;		int i = path.lastIndexOf('/');		if (i > 0) {			String p = path.substring(0, i);			String v = path.substring(i + 1);			newAttribute(p, v);		}		nd = getTerminalNode(path, Node.ATTRIBUTE_NODE);		nd.setNodeValue(value);	}	/**	 * Save XML file	 * 	 * @throws Exception	 */	public void save() throws Exception {		save(xmlFile);	}	/**	 * Save XML file	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public void save(String file) throws Exception {		writeNodeToFile(xmlDocument, file);	}	/**	 * Get the byte array of the XML file	 * 	 * @return	 */	public byte[] getFileBytes() {		ByteArrayOutputStream baos = new ByteArrayOutputStream();		try {			outputDocument(xmlDocument, baos);		} catch (Exception ex) {		}		return baos.toByteArray();	}	/**	 * Save XML file	 * 	 * @param os	 *            File OutputStream	 * @throws Exception	 */	public void save(OutputStream os) throws Exception {		outputDocument(xmlDocument, os);	}	/**	 * Write document to file	 * 	 * @param node	 *            Document	 * @param file	 *            XML file path	 * @throws Exception	 */	public static void writeNodeToFile(Document node, String file)			throws Exception {		outputDocument(node, file);	}	/**	 * Output document	 * 	 * @param node	 *            Document	 * @param out	 *            The object to output to. It can be:	 *            String,OutputStream,Writer.	 * @throws Exception	 */	public static void outputDocument(Document node, Object out)			throws Exception {		StreamResult result;		if (out instanceof String) {			result = new StreamResult((String) out);		} else if (out instanceof OutputStream) {			result = new StreamResult((OutputStream) out);		} else if (out instanceof Writer) {			result = new StreamResult((Writer) out);		} else {			return;		}		TransformerFactory tFactory = TransformerFactory.newInstance();		Transformer transformer = tFactory.newTransformer();		Properties properties = transformer.getOutputProperties();		properties.setProperty(OutputKeys.ENCODING, "UTF-8");		properties.setProperty(OutputKeys.METHOD, "xml");		properties.setProperty(OutputKeys.INDENT, "yes");		transformer.setOutputProperties(properties);		DOMSource source = new DOMSource(node);		transformer.transform(source, result);	}	/**	 * Get the name Section of the nodes	 * 	 * @param obj	 * @return	 * @throws Exception	 */	private Section getNodesName(Object obj) throws Exception {		Section ss = new Section();		if (obj == null) {			return ss;		}		Node nd = null;		if (obj instanceof NodeList) {			NodeList nl = (NodeList) obj;			for (int i = 0; i < nl.getLength(); i++) {				nd = nl.item(i);				if (nd.getNodeType() != Node.ELEMENT_NODE) {					continue;				}				ss.unionSection(nd.getNodeName());			}		}		if (obj instanceof NamedNodeMap) {			NamedNodeMap nnm = (NamedNodeMap) obj;			for (int i = 0; i < nnm.getLength(); i++) {				nd = nnm.item(i);				ss.unionSection(nd.getNodeName());			}		}		return ss;	}	/**	 * Locate node among nodes	 * 	 * @param obj	 *            NodeList or NamedNodeMap	 * @param nodeName	 *            Node name	 * @return	 * @throws Exception	 */	private Node locateNode(Object obj, String nodeName) throws Exception {		int i = 0, j = 0;		String sTmp;		Node tmpNode = null;		NodeList nl;		NamedNodeMap nnm;		if (obj instanceof NodeList) {			nl = (NodeList) obj;			i = nl.getLength();			for (j = 0; j < i; j++) {				tmpNode = nl.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (obj instanceof NamedNodeMap) {			nnm = (NamedNodeMap) obj;			i = nnm.getLength();			for (j = 0; j < i; j++) {				tmpNode = nnm.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (j == i) {			throw new Exception(mm.getMessage("xmlfile.falsenodename", xmlFile,					nodeName));		}		return tmpNode;	}	/**	 * Get terminal node	 * 	 * @param path	 *            Node path	 * @param type	 *            Constants defined in org.w3c.dom.Node	 * @return	 * @throws Exception	 */	private Node getTerminalNode(String path, short type) throws Exception {		Node tmpNode = null;		String sNode, sLast;		int i;		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath1", xmlFile));		}		i = path.lastIndexOf('/');		if (i == -1) {			if (path.length() == 0) {				return xmlDocument;			}			sNode = path;			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(xmlDocument.getChildNodes(), sNode);			}		} else {			sLast = path.substring(i + 1);			path = path.substring(0, i);			StringTokenizer st = new StringTokenizer(path, "/");			NodeList childNodes = xmlDocument.getChildNodes();			while (st.hasMoreTokens()) {				sNode = st.nextToken();				tmpNode = locateNode(childNodes, sNode);				if (tmpNode == null) {					throw new Exception(mm.getMessage("xmlfile.notexistpath",							xmlFile, path));				}				childNodes = tmpNode.getChildNodes();			}			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(tmpNode.getChildNodes(), sLast);			} else {				tmpNode = locateNode(tmpNode.getAttributes(), sLast);			}		}		if (tmpNode == null) {			throw new Exception(mm.getMessage("xmlfile.notexistpath", xmlFile,					path));		}		return tmpNode;	}	/**	 * Is the legal XML name	 * 	 * @param input	 *            Node name	 * @return	 */	public static boolean isLegalXmlName(String input) {		if (input == null || input.length() == 0) {			return false;		}		return true;	}	/**	 * ����XML	 * @param is	 * @return	 * @throws Exception	 */	public static Document parseXml(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		return docBuilder.parse(is);	}	/**	 * ������ȡ�ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static Element getChild(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					return (Element) node;				}			}		}		return null;	}	/**	 * ������ȡ����ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static List<Element> getChildren(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		List<Element> childList = new ArrayList<Element>();		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					childList.add((Element) node);				}			}		}		if (childList.isEmpty())			return null;		return childList;	}}

data/java/10005.txt

@@ -1 +0,0 @@
-package com.scudata.ide.common;import java.io.ByteArrayOutputStream;import java.io.File;import java.io.FileInputStream;import java.io.InputStream;import java.io.OutputStream;import java.io.Writer;import java.util.ArrayList;import java.util.List;import java.util.Properties;import java.util.StringTokenizer;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.OutputKeys;import javax.xml.transform.Transformer;import javax.xml.transform.TransformerFactory;import javax.xml.transform.dom.DOMSource;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import com.scudata.app.common.Section;import com.scudata.common.MessageManager;import com.scudata.ide.common.resources.IdeCommonMessage;/** * Used to parse xml files */public class XMLFile {	/**	 * XML file path	 */	public String xmlFile = null;	/**	 * XML Document	 */	private Document xmlDocument = null;	/**	 * Common MessageManager	 */	private MessageManager mm = IdeCommonMessage.get();	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public XMLFile(String file) throws Exception {		this(new File(file), "root");	}	/**	 * Constructor	 * 	 * @param file	 *            XML file path	 * @param root	 *            Root node name	 * @throws Exception	 */	public XMLFile(File file, String root) throws Exception {		if (file != null) {			xmlFile = file.getAbsolutePath();			if (file.exists() && file.isFile()) {				loadXMLFile(new FileInputStream(file));			} else {				XMLFile.newXML(xmlFile, root);			}		} else {			DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory					.newInstance();			// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 			xmlDocument = docBuilder.newDocument();			Element eRoot = xmlDocument.createElement(root);			eRoot.normalize();			xmlDocument.appendChild(eRoot);		}	}	/**	 * Constructor	 * 	 * @param is	 *            File InputStream	 * @throws Exception	 */	public XMLFile(InputStream is) throws Exception {		loadXMLFile(is);	}	/**	 * Load XML file from file input stream	 * 	 * @param is	 * @throws Exception	 */	private void loadXMLFile(InputStream is) throws Exception {		xmlDocument = parseXml(is);	}	/**	 * Create a new XML file	 *	 * @param file	 *            The name of the file to be created. If the file exists, it	 *            will overwrite the original one.	 * @param root	 *            Root node name	 * @return Return true if the creation is successful, otherwise false.	 */	public static XMLFile newXML(String file, String root) throws Exception {		if (!isLegalXmlName(root)) {			throw new Exception(IdeCommonMessage.get().getMessage(					"xmlfile.falseroot", file, root));		}		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		Document sxmlDocument = docBuilder.newDocument();		Element eRoot = sxmlDocument.createElement(root);		eRoot.normalize();		sxmlDocument.appendChild(eRoot);		writeNodeToFile(sxmlDocument, file);		return new XMLFile(file);	}	/**	 * List all sub-elements under the path path in the file file, including	 * elements and attributes.	 *	 * @param path	 *            Node path, use / as a separator, for example: "a/b/c"	 * @return Return the section of the element and attribute under the path	 *         node	 */	public Section listAll(String path) throws Exception {		Section ss = new Section();		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		ss.unionSection(getNodesName(tmpNode.getChildNodes()));		ss.unionSection(getNodesName(tmpNode.getAttributes()));		return ss;	}	/**	 * List all sub-elements under path in the file	 *	 * @param path	 *            Node path	 * @return Return the section of the elements under the path node	 */	public Section listElement(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getChildNodes());	}	/**	 * List all attributes under path in file	 *	 * @param path	 *            Node path	 * @return Return the section of the attribute names under the path node	 */	public Section listAttribute(String path) throws Exception {		Node tmpNode = getTerminalNode(path, Node.ELEMENT_NODE);		return getNodesName(tmpNode.getAttributes());	}	/**	 * List the attribute value of the path node in the file	 *	 * @param path	 *            Node path	 * @return The value of the attribute	 */	public String getAttribute(String path) {		try {			Node tmpNode = getTerminalNode(path, Node.ATTRIBUTE_NODE);			return tmpNode.getNodeValue();		} catch (Exception ex) {			return "";		}	}	/**	 * Create a new element under the current path	 *	 * @param path	 *            Node path	 * @param element	 *            The name of the element to be created	 * @return The node path after the new element is successfully created	 */	public String newElement(String path, String element) throws Exception {		Element newElement = null;		if (!isLegalXmlName(element)) {			throw new Exception(mm.getMessage("xmlfile.falseelement", xmlFile,					element));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NodeList nl = parent.getChildNodes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(element)) {				break;			}		}		if (i >= nl.getLength()) {			newElement = xmlDocument.createElement(element);			parent.appendChild(newElement);		}		return path + "/" + element;	}	/**	 * Create a new attribute under the current path	 *	 * @param path	 *            Node path	 * @param attr	 *            The name of the attribute to be created	 * @return Return 1 on success, -1 on failure (when the attribute with the	 *         same name exists)	 */	public int newAttribute(String path, String attr) throws Exception {		if (!isLegalXmlName(attr)) {			throw new Exception(mm.getMessage("xmlfile.falseattr", xmlFile,					attr));		}		Node parent = getTerminalNode(path, Node.ELEMENT_NODE);		NamedNodeMap nl = parent.getAttributes();		int i;		for (i = 0; i < nl.getLength(); i++) {			if (nl.item(i).getNodeName().equalsIgnoreCase(attr)) {				break;			}		}		if (i >= nl.getLength()) {			((Element) parent).setAttribute(attr, "");		} else {			return -1;		}		return 1;	}	/**	 * Delete the node specified by path	 *	 * @param path	 *            Node path	 */	public void delete(String path) throws Exception {		deleteAttribute(path);		deleteElement(path);	}	/**	 * Delete the element node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteElement(String path) throws Exception {		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node parent = nd.getParentNode();		parent.removeChild(nd);	}	/**	 * Whether the node path exists	 * 	 * @param path	 *            Node path	 * @return Exists when true, and does not exist when false.	 */	public boolean isPathExists(String path) {		try {			getTerminalNode(path, Node.ELEMENT_NODE);		} catch (Exception ex) {			return false;		}		return true;	}	/**	 * Delete the attribute node specified by path	 *	 * @param path	 *            Node path	 */	public void deleteAttribute(String path) throws Exception {		int i = path.lastIndexOf('/');		Node parent;		if (i > 0) {			String p = path.substring(0, i);			parent = getTerminalNode(p, Node.ELEMENT_NODE);		} else {			return;		}		((Element) parent).removeAttribute(path.substring(i + 1));	}	/**	 * Change the name of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameAttribute(String path, String newName) throws Exception {		int i;		i = path.lastIndexOf('/');		if (i == -1) {			throw new Exception(mm.getMessage("xmlfile.falsepath", xmlFile,					path));		}		String value = getAttribute(path);		deleteAttribute(path);		setAttribute(path.substring(0, i) + "/" + newName, value);	}	/**	 * Change the name of the element node of the path	 *	 * @param path	 *            Node path	 * @param newName	 *            New name	 * @throws Exception	 */	public void renameElement(String path, String newName) throws Exception {		if (path.lastIndexOf('/') == -1) {			throw new Exception(mm.getMessage("xmlfile.renameroot", xmlFile));		}		Node nd = getTerminalNode(path, Node.ELEMENT_NODE);		Node pp = nd.getParentNode();		NodeList childNodes = pp.getChildNodes();		int i;		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				if (newName.equalsIgnoreCase(childNodes.item(i).getNodeName())) {					throw new Exception(mm.getMessage("xmlfile.existnode",							xmlFile, newName));				}			}		}		Element newNode = xmlDocument.createElement(newName);		childNodes = nd.getChildNodes();		if (childNodes != null) {			for (i = 0; i < childNodes.getLength(); i++) {				newNode.appendChild(childNodes.item(i));			}		}		NamedNodeMap childAttr = nd.getAttributes();		Node tmpNode;		if (childAttr != null) {			for (i = 0; i < childAttr.getLength(); i++) {				tmpNode = childAttr.item(i);				newNode.setAttribute(tmpNode.getNodeName(),						tmpNode.getNodeValue());			}		}		pp.replaceChild(newNode, nd);	}	/**	 * Set the attribute value of the attribute node of the path	 *	 * @param path	 *            Node path	 * @param value	 *            The attribute value to be set, null means delete the	 *            attribute.	 */	public void setAttribute(String path, String value) throws Exception {		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (path.trim().length() == 0) {			throw new Exception(mm.getMessage("xmlfile.nullpath", xmlFile));		}		if (value == null) {			deleteAttribute(path);			return;		}		Node nd;		int i = path.lastIndexOf('/');		if (i > 0) {			String p = path.substring(0, i);			String v = path.substring(i + 1);			newAttribute(p, v);		}		nd = getTerminalNode(path, Node.ATTRIBUTE_NODE);		nd.setNodeValue(value);	}	/**	 * Save XML file	 * 	 * @throws Exception	 */	public void save() throws Exception {		save(xmlFile);	}	/**	 * Save XML file	 * 	 * @param file	 *            XML file path	 * @throws Exception	 */	public void save(String file) throws Exception {		writeNodeToFile(xmlDocument, file);	}	/**	 * Get the byte array of the XML file	 * 	 * @return	 */	public byte[] getFileBytes() {		ByteArrayOutputStream baos = new ByteArrayOutputStream();		try {			outputDocument(xmlDocument, baos);		} catch (Exception ex) {		}		return baos.toByteArray();	}	/**	 * Save XML file	 * 	 * @param os	 *            File OutputStream	 * @throws Exception	 */	public void save(OutputStream os) throws Exception {		outputDocument(xmlDocument, os);	}	/**	 * Write document to file	 * 	 * @param node	 *            Document	 * @param file	 *            XML file path	 * @throws Exception	 */	public static void writeNodeToFile(Document node, String file)			throws Exception {		outputDocument(node, file);	}	/**	 * Output document	 * 	 * @param node	 *            Document	 * @param out	 *            The object to output to. It can be:	 *            String,OutputStream,Writer.	 * @throws Exception	 */	public static void outputDocument(Document node, Object out)			throws Exception {		StreamResult result;		if (out instanceof String) {			result = new StreamResult((String) out);		} else if (out instanceof OutputStream) {			result = new StreamResult((OutputStream) out);		} else if (out instanceof Writer) {			result = new StreamResult((Writer) out);		} else {			return;		}		TransformerFactory tFactory = TransformerFactory.newInstance();		Transformer transformer = tFactory.newTransformer();		Properties properties = transformer.getOutputProperties();		properties.setProperty(OutputKeys.ENCODING, "UTF-8");		properties.setProperty(OutputKeys.METHOD, "xml");		properties.setProperty(OutputKeys.INDENT, "yes");		transformer.setOutputProperties(properties);		DOMSource source = new DOMSource(node);		transformer.transform(source, result);	}	/**	 * Get the name Section of the nodes	 * 	 * @param obj	 * @return	 * @throws Exception	 */	private Section getNodesName(Object obj) throws Exception {		Section ss = new Section();		if (obj == null) {			return ss;		}		Node nd = null;		if (obj instanceof NodeList) {			NodeList nl = (NodeList) obj;			for (int i = 0; i < nl.getLength(); i++) {				nd = nl.item(i);				if (nd.getNodeType() != Node.ELEMENT_NODE) {					continue;				}				ss.unionSection(nd.getNodeName());			}		}		if (obj instanceof NamedNodeMap) {			NamedNodeMap nnm = (NamedNodeMap) obj;			for (int i = 0; i < nnm.getLength(); i++) {				nd = nnm.item(i);				ss.unionSection(nd.getNodeName());			}		}		return ss;	}	/**	 * Locate node among nodes	 * 	 * @param obj	 *            NodeList or NamedNodeMap	 * @param nodeName	 *            Node name	 * @return	 * @throws Exception	 */	private Node locateNode(Object obj, String nodeName) throws Exception {		int i = 0, j = 0;		String sTmp;		Node tmpNode = null;		NodeList nl;		NamedNodeMap nnm;		if (obj instanceof NodeList) {			nl = (NodeList) obj;			i = nl.getLength();			for (j = 0; j < i; j++) {				tmpNode = nl.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (obj instanceof NamedNodeMap) {			nnm = (NamedNodeMap) obj;			i = nnm.getLength();			for (j = 0; j < i; j++) {				tmpNode = nnm.item(j);				sTmp = tmpNode.getNodeName();				if (sTmp.equalsIgnoreCase(nodeName)) {					break;				}			}		}		if (j == i) {			throw new Exception(mm.getMessage("xmlfile.falsenodename", xmlFile,					nodeName));		}		return tmpNode;	}	/**	 * Get terminal node	 * 	 * @param path	 *            Node path	 * @param type	 *            Constants defined in org.w3c.dom.Node	 * @return	 * @throws Exception	 */	private Node getTerminalNode(String path, short type) throws Exception {		Node tmpNode = null;		String sNode, sLast;		int i;		if (path == null) {			throw new Exception(mm.getMessage("xmlfile.nullpath1", xmlFile));		}		i = path.lastIndexOf('/');		if (i == -1) {			if (path.length() == 0) {				return xmlDocument;			}			sNode = path;			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(xmlDocument.getChildNodes(), sNode);			}		} else {			sLast = path.substring(i + 1);			path = path.substring(0, i);			StringTokenizer st = new StringTokenizer(path, "/");			NodeList childNodes = xmlDocument.getChildNodes();			while (st.hasMoreTokens()) {				sNode = st.nextToken();				tmpNode = locateNode(childNodes, sNode);				if (tmpNode == null) {					throw new Exception(mm.getMessage("xmlfile.notexistpath",							xmlFile, path));				}				childNodes = tmpNode.getChildNodes();			}			if (type == Node.ELEMENT_NODE) {				tmpNode = locateNode(tmpNode.getChildNodes(), sLast);			} else {				tmpNode = locateNode(tmpNode.getAttributes(), sLast);			}		}		if (tmpNode == null) {			throw new Exception(mm.getMessage("xmlfile.notexistpath", xmlFile,					path));		}		return tmpNode;	}	/**	 * Is the legal XML name	 * 	 * @param input	 *            Node name	 * @return	 */	public static boolean isLegalXmlName(String input) {		if (input == null || input.length() == 0) {			return false;		}		return true;	}	/**	 * ����XML	 * @param is	 * @return	 * @throws Exception	 */	public static Document parseXml(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();		return docBuilder.parse(is);	}	/**	 * ������ȡ�ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static Element getChild(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					return (Element) node;				}			}		}		return null;	}	/**	 * ������ȡ����ӽڵ�	 * @param parent	 * @param childName	 * @return	 */	public static List<Element> getChildren(Node parent, String childName) {		NodeList list = parent.getChildNodes();		if (list == null) {			return null;		}		List<Element> childList = new ArrayList<Element>();		Node node;		for (int i = 0; i < list.getLength(); i++) {			node = list.item(i);			if (node != null && node.getNodeType() == Node.ELEMENT_NODE) {				if (childName.equalsIgnoreCase(node.getNodeName())) {					childList.add((Element) node);				}			}		}		if (childList.isEmpty())			return null;		return childList;	}}

data/java/10006.txt

@@ -1 +0,0 @@
-package com.scudata.parallel;import java.io.ByteArrayInputStream;import java.io.ByteArrayOutputStream;import java.io.InputStream;import java.io.OutputStream;import java.util.ArrayList;import java.util.List;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.Result;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.xml.sax.SAXException;import com.scudata.app.config.ConfigConsts;import com.scudata.app.config.ConfigWriter;import com.scudata.common.Logger;import com.scudata.common.MessageManager;import com.scudata.common.StringUtils;import com.scudata.parallel.XmlUtil;import com.scudata.resources.ParallelMessage;/** * �ֻ������� * @author Joancy * */public class UnitConfig extends ConfigWriter {	// version 3	private int tempTimeOut = 12; // ��ʱ�ļ����ʱ�䣬��Ϊ��λ��0Ϊ��������λ����Сʱ��	private int proxyTimeOut = 12; // �ļ��Լ��α����Ĺ���ʱ�䣬��Ϊ��λ��0Ϊ��������λ����Сʱ��	private int interval = 30 * 60; // �����������ʱ�ļ����ڵ�ʱ������0Ϊ�������ڡ���λ��	private int backlog = 10; // ��������󲢷����ӣ�����ϵͳȱʡ���Ϊ50���޶���Χ1��50	boolean autoStart=false;	private List<Host> hosts = null;	//	�ͻ��˰�����	private boolean checkClient = false;	private List<String> enabledClientsStart = null;	private List<String> enabledClientsEnd = null;		MessageManager mm = ParallelMessage.get();		/**	 * �������ļ�������������Ϣ	 * @param is �����ļ���	 * @throws Exception ���س���ʱ�׳��쳣	 */	public void load(InputStream is) throws Exception {		load(is, true);	}		/**	 * �������ļ����ֽ����ݼ���������Ϣ	 * @param buf �����ļ��ֽ�����	 * @throws Exception ���س����׳��쳣	 */	public void load(byte[] buf) throws Exception {		ByteArrayInputStream bais = new ByteArrayInputStream(buf);		load(bais, true);		bais.close();	}		/**	 * ����ip��port����Host���󣬲���Host����ά����hosts����	 * @param hosts hosts����	 * @param ip IP��ַ	 * @param port �˿ں�	 * @return ��ip��port����Host����	 */	public static Host getHost(List<Host> hosts, String ip, int port) {		Host h = null;		for (int i = 0, size = hosts.size(); i < size; i++) {			h = hosts.get(i);			if (h.getIp().equals(ip) && h.getPort()==port) {				return h;			}		}		h = new Host(ip,port);		hosts.add(h);		return h;	}	/**	 * ���������ļ�������	 * @param is �����ļ���	 * @param showDebug �Ƿ����������õĵ�����Ϣ	 * @throws Exception �ļ���ʽ�������׳��쳣	 */	public void load(InputStream is, boolean showDebug) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 		Document xmlDocument = docBuilder.parse(is);		NodeList nl = xmlDocument.getChildNodes();		Node root = null;		for (int i = 0; i < nl.getLength(); i++) {			Node n = nl.item(i);			if (n.getNodeName().equalsIgnoreCase("Server")) {				root = n;			}		}		if (root == null) {			throw new Exception(mm.getMessage("UnitConfig.errorxml"));		}		String ver = XmlUtil.getAttribute(root, "Version");		if (ver==null || Integer.parseInt( ver )<3) {			throw new RuntimeException(mm.getMessage("UnitConfig.updateversion",UnitContext.UNIT_XML));		}		// version 3		// Server ����		Node subNode = XmlUtil.findSonNode(root, "tempTimeout");		String buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			tempTimeOut = Integer.parseInt(buf);			if (tempTimeOut > 0) {				if (showDebug)					Logger.debug("Using TempTimeOut=" + tempTimeOut							+ " hour(s).");			}		}		subNode = XmlUtil.findSonNode(root, "interval");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			int t = Integer.parseInt(buf);			if (t > 0)				interval = t;// ���ò���ȷʱ��ʹ��ȱʡ�����		}		subNode = XmlUtil.findSonNode(root, "backlog");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			int t = Integer.parseInt(buf);			if (t > 0)				backlog = t;		}		subNode = XmlUtil.findSonNode(root, "autostart");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			autoStart = new Boolean(buf);		}		subNode = XmlUtil.findSonNode(root, "proxyTimeout");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			proxyTimeOut = Integer.parseInt(buf);			if (proxyTimeOut > 0) {				if (showDebug)					Logger.debug("Using ProxyTimeOut=" + proxyTimeOut							+ " hour(s).");			}		}		Node nodeHosts = XmlUtil.findSonNode(root, "Hosts");		NodeList hostsList = nodeHosts.getChildNodes();		hosts = new ArrayList<Host>();		for (int i = 0; i < hostsList.getLength(); i++) {			Node xmlNode = hostsList.item(i);			if (!xmlNode.getNodeName().equalsIgnoreCase("Host")) {				continue;			}			buf = XmlUtil.getAttribute(xmlNode, "ip");			String sPort = XmlUtil.getAttribute(xmlNode, "port");			Host host = new Host(buf,Integer.parseInt(sPort));						buf = XmlUtil.getAttribute(xmlNode, "maxTaskNum");			if(StringUtils.isValidString(buf)){				host.setMaxTaskNum(Integer.parseInt(buf));			}						buf = XmlUtil.getAttribute(xmlNode, "preferredTaskNum");			if(StringUtils.isValidString(buf)){				host.setPreferredTaskNum(Integer.parseInt(buf));			}						hosts.add(host);		}// hosts				Node nodeECs = XmlUtil.findSonNode(root, "EnabledClients");		buf = XmlUtil.getAttribute(nodeECs, "check");		if (StringUtils.isValidString(buf)){			checkClient = new Boolean(buf);		}		NodeList ecList = nodeECs.getChildNodes();		enabledClientsStart = new ArrayList<String>();		enabledClientsEnd = new ArrayList<String>();		for (int i = 0; i < ecList.getLength(); i++) {			Node xmlNode = ecList.item(i);			if (!xmlNode.getNodeName().equalsIgnoreCase("Host"))				continue;			buf = XmlUtil.getAttribute(xmlNode, "start");			if (!StringUtils.isValidString(buf))				continue;			enabledClientsStart.add(buf);			buf = XmlUtil.getAttribute(xmlNode, "end");			enabledClientsEnd.add(buf);		}	}	/**	 * �������ļ�ת��Ϊ�ֽ�����	 * @return �ֽ�����	 * @throws Exception ת������ʱ�׳��쳣	 */	public byte[] toFileBytes() throws Exception{		ByteArrayOutputStream baos = new ByteArrayOutputStream();		save(baos);		return baos.toByteArray();	}		/**	 * �������ļ���Ϣ���浽�����out	 * @param out �����	 * @throws SAXException д����ʱ�׳��쳣	 */	public void save(OutputStream out) throws SAXException {		Result resultxml = new StreamResult(out);		handler.setResult(resultxml);		level = 0;		handler.startDocument();		// ���ø��ڵ�Ͱ汾		handler.startElement("", "", "SERVER", getAttributesImpl(new String[] {				ConfigConsts.VERSION, "3" }));		level = 1;		writeAttribute("TempTimeOut", tempTimeOut + "");		writeAttribute("Interval", interval + "");		writeAttribute("Backlog", backlog + "");		writeAttribute("AutoStart", autoStart + "");		writeAttribute("ProxyTimeOut", proxyTimeOut + "");		startElement("Hosts", null);		if (hosts != null) {			for (int i = 0, size = hosts.size(); i < size; i++) {				level = 2;				Host h = hosts.get(i);				startElement("Host", getAttributesImpl(new String[] { "ip",						h.ip,"port",h.port+"",						"maxTaskNum",h.maxTaskNum+"","preferredTaskNum",h.preferredTaskNum+""}));				endElement("Host");			}			level = 1;			endElement("Hosts");		} else {			endEmptyElement("Hosts");		}				level = 1;		startElement("EnabledClients", getAttributesImpl(new String[] { "check",				checkClient+"" }));		if (enabledClientsStart != null) {			level = 2;			for (int i = 0, size = enabledClientsStart.size(); i < size; i++) {				String start = enabledClientsStart.get(i);				String end = enabledClientsEnd.get(i);				startElement("Host", getAttributesImpl(new String[] {						"start",start,"end",end }));				endElement("Host");			}			level = 1;			endElement("EnabledClients");		} else {			endEmptyElement("EnabledClients");		}				handler.endElement("", "", "SERVER");		// �ĵ�����,ͬ��������		handler.endDocument();	}	/**	 * ��ȡ��ʱ�ļ���ʱʱ�䣬��λͳһΪСʱ	 * ����ͬgetTempTimeOutHour���������ڼ���	 * @return ��ʱʱ��	 */	public int getTempTimeOut() {		return tempTimeOut;	}	/**	 * ��ȡ��ʱ�ļ���ʱʱ�䣬��λСʱ	 * @return ��ʱʱ��	 */	public int getTempTimeOutHour() {		return tempTimeOut;	}	/**	 * ������ʱ�ļ���ʱʱ��	 * @param tempTimeOut ʱ��	 */	public void setTempTimeOut(int tempTimeOut) {		this.tempTimeOut = tempTimeOut;	}	/**	 * ��Сʱ���ó�ʱʱ�䣬����ͬsetTempTimeOut	 * �������ڴ������	 * @param tempTimeOutHour ʱ��	 */	public void setTempTimeOutHour(int tempTimeOutHour) {		this.tempTimeOut = tempTimeOutHour;	}	public int getProxyTimeOut() {		return proxyTimeOut;	}	public boolean isAutoStart(){		return autoStart;	}	public void setAutoStart(boolean as){		autoStart = as;	}	/**	 * ȡ�����������ʱ�䣨��λΪСʱ��	 * @return ����ʱʱ��	 */	public int getProxyTimeOutHour() {		return proxyTimeOut;	}	/**	 * ���ô���ʱʱ��	 * @param proxyTimeOut ��ʱʱ��	 */	public void setProxyTimeOut(int proxyTimeOut) {		this.proxyTimeOut = proxyTimeOut;	}	/** * ����ͬsetProxyTimeOut * @param proxyTimeOutHour */	public void setProxyTimeOutHour(int proxyTimeOutHour) {		this.proxyTimeOut = proxyTimeOutHour;// * 3600;	}	/**	 * ����Ƿ�ʱ��ʱ����(��λΪ��)	 * @return ʱ����	 */	public int getInterval() {		return interval;	}	/**	 * ���ü�鳬ʱ��ʱ����	 * @param interval ʱ����	 */	public void setInterval(int interval) {		this.interval = interval;	}	/**	 * ��ȡ����˵IJ���������	 * @return ������	 */	public int getBacklog() {		return backlog;	}		/**	 * ���÷���������������	 * @param backlog ����������	 */	public void setBacklog(int backlog) {		this.backlog = backlog;	}	/**	 * �г���ǰ�ֻ��µ����н��̵�ַ	 * @return ���������б�	 */	public List<Host> getHosts() {		return hosts;	}	/**	 * ���ý��������б�	 * @param hosts ���������б�	 */	public void setHosts(List<Host> hosts) {		this.hosts = hosts;	}	/**	 * �Ƿ�У��ͻ���	 * @return	 */	public boolean isCheckClients() {		return checkClient;	}	public void setCheckClients(boolean b) {		this.checkClient = b;	}	public List<String> getEnabledClientsStart() {		return enabledClientsStart;	}	public void setEnabledClientsStart(List<String> enHosts) {		this.enabledClientsStart = enHosts;	}		public List<String> getEnabledClientsEnd() {		return enabledClientsEnd;	}	public void setEnabledClientsEnd(List<String> enHosts) {		this.enabledClientsEnd = enHosts;	}	public static class Host {//		�ʺ���ҵ��ȱʡΪCPU����,���ܱ�����		int preferredTaskNum = Runtime.getRuntime().availableProcessors();				int maxTaskNum = preferredTaskNum*2;		String ip;		int port;				public Host(String ip, int port) {			this.ip = ip;			this.port = port;		}		public String getIp() {			return ip;		}				public int getPort(){			return port;		}				public int getMaxTaskNum(){			return maxTaskNum;		}		public void setMaxTaskNum(int max){			maxTaskNum = max;		}				public int getPreferredTaskNum(){			return preferredTaskNum;		}		public void setPreferredTaskNum(int num){			preferredTaskNum = num;		}		public String toString() {			StringBuffer sb = new StringBuffer();			sb.append(ip);			sb.append(":[");			sb.append(port);			sb.append("]");			return sb.toString();		}	}}

data/java/10007.txt

@@ -1 +0,0 @@
-package com.scudata.server.http;import java.io.File;import java.io.InputStream;import java.io.OutputStream;import java.util.ArrayList;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.Result;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.xml.sax.SAXException;import com.scudata.app.config.ConfigConsts;import com.scudata.app.config.ConfigWriter;import com.scudata.common.ArgumentTokenizer;import com.scudata.common.Logger;import com.scudata.common.MessageManager;import com.scudata.common.StringUtils;import com.scudata.common.Logger.FileHandler;import com.scudata.dm.Env;import com.scudata.parallel.UnitClient;import com.scudata.parallel.UnitContext;import com.scudata.parallel.XmlUtil;import com.scudata.resources.ParallelMessage;import com.scudata.server.unit.UnitServer;import sun.net.util.IPAddressUtil;/** * Http�������Ļ������ò����� *  * @author Joancy * */public class HttpContext extends ConfigWriter {	public static final String HTTP_CONFIG_FILE = "HttpServer.xml";	public static String dfxHome;	private String host = UnitContext.getDefaultHost();// "127.0.0.1";	private int port = 8508;	private int maxLinks = 50;	private boolean autoStart=false;	private ArrayList<String> sapPath = new ArrayList<String>();	static MessageManager mm = ParallelMessage.get();	/**	 * ���캯��	 * @param showException �Ƿ񽫹����쳣��ӡ������̨���������	 */	public HttpContext(boolean showException) {		try {			InputStream inputStream = UnitContext					.getUnitInputStream(HTTP_CONFIG_FILE);			if (inputStream != null) {				load(inputStream);			}		} catch (Exception x) {			if (showException) {				x.printStackTrace();			}		}	}	/**	 * ��ȡȱʡ�ķ���url��ַ	 * @return url��ַ	 */	public String getDefaultUrl() {		String tmp = host;		if (IPAddressUtil.isIPv6LiteralAddress(host)) {			int percentIndex = host.indexOf('%');			if (percentIndex > 0) {				tmp = tmp.substring(0, percentIndex);			}			tmp = "[" + tmp + "]";		}		return "http://" + tmp + ":" + port;	}	/**	 * �������ļ������������ػ�������	 * @param is �����ļ�������	 * @throws Exception ��ʽ����ʱ�׳��쳣	 */	public void load(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 		Document xmlDocument = docBuilder.parse(is);		NodeList nl = xmlDocument.getChildNodes();		Node root = null;		for (int i = 0; i < nl.getLength(); i++) {			Node n = nl.item(i);			if (n.getNodeName().equalsIgnoreCase("Server")) {				root = n;			}		}		if (root == null) {			throw new Exception(mm.getMessage("UnitConfig.errorxml"));		}		// Server ����		String buf = XmlUtil.getAttribute(root, "host");		if (StringUtils.isValidString(buf)) {			host = buf;		}		buf = XmlUtil.getAttribute(root, "port");		if (StringUtils.isValidString(buf)) {			port = Integer.parseInt(buf);		}				buf = XmlUtil.getAttribute(root, "autostart");		if (StringUtils.isValidString(buf)) {			autoStart = Boolean.parseBoolean(buf);		}		// �̶������־������̨�� �� start.home/nodes/[ip_port]/log Ŀ¼��		String home = UnitServer.getHome();		String file = "http/" + UnitClient.getHostPath(host) + "_" + port + "/log/log.txt";		File f = new File(home, file);		File fp = f.getParentFile();		if (!fp.exists()) {			fp.mkdirs();		}		String logFile = f.getAbsolutePath();		FileHandler lfh = Logger.newFileHandler(logFile);		Logger.addFileHandler(lfh);				buf = XmlUtil.getAttribute(root, "parallelNum");		if (StringUtils.isValidString(buf)) {		}		buf = XmlUtil.getAttribute(root, "maxlinks");		if (StringUtils.isValidString(buf)) {			maxLinks = Integer.parseInt(buf);		}		String mp = Env.getMainPath();		if(!StringUtils.isValidString( mp )) {			Logger.info("Main path is empty.");		}else {			File main = new File( mp );			if( main.exists() ) {				String mainPath = main.getAbsolutePath();				addSubdir2Sappath( main, mainPath );			}		}		/*buf = XmlUtil.getAttribute(root, "sapPath");		if (StringUtils.isValidString(buf)) {			ArgumentTokenizer at = new ArgumentTokenizer(buf, ',');			while (at.hasMoreTokens()) {				sapPath.add(at.nextToken().trim());			}		}*/	}		private void addSubdir2Sappath( File main, String mainPath ) {		File[] fs = main.listFiles();		if(fs==null) {			return;		}		for( int i = 0; i < fs.length; i++ ) {			if( !fs[i].isDirectory() ) continue;			String path = fs[i].getAbsolutePath();			path = path.substring( mainPath.length() );			path = StringUtils.replace( path, "\\", "/" );			sapPath.add( path );			addSubdir2Sappath( fs[i], mainPath );		}	}	public void save(OutputStream out) throws SAXException {		Result resultxml = new StreamResult(out);		handler.setResult(resultxml);		level = 0;		handler.startDocument();		// ���ø��ڵ�Ͱ汾		String paths = "";		for (int i = 0; i < sapPath.size(); i++) {			if (paths.length() > 0)				paths += ",";			paths += sapPath.get(i);		}		handler.startElement("", "", "Server", getAttributesImpl(new String[] {				ConfigConsts.VERSION, "1", "host", host, "port", port + "", "autostart", autoStart + "",				"maxlinks", maxLinks + "",  //parallelNum + "",				"sapPath", paths }));		handler.endElement("", "", "Server");		// �ĵ�����,ͬ��������		handler.endDocument();	}	public String getHost() {		return host;	}	public int getPort() {		return port;	}	public boolean isAutoStart() {		return autoStart;	}	public void setHost(String host) {		this.host = host;	}	public void setPort(int port) {		this.port = port;	}	public void setAutoStart(boolean as) {		this.autoStart = as;	}//	public int getParallelNum() {//		return parallelNum;//	}////	public void setParallelNum(int num) {//		this.parallelNum = num;//	}	public int getMaxLinks() {		return maxLinks;	}	public void setMaxLinks(int m) {		this.maxLinks = m;	}	public ArrayList<String> getSapPath() {		return sapPath;	}	public void setSapPath(ArrayList<String> paths) {		sapPath = paths;	}	public String toString() {		return host + ":" + port;	}}

data/java/10008.txt

@@ -1 +0,0 @@
-package com.scudata.server.odbc;import java.io.File;import java.io.InputStream;import java.io.OutputStream;import java.util.ArrayList;import java.util.List;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.transform.Result;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.xml.sax.SAXException;import com.scudata.app.config.ConfigConsts;import com.scudata.app.config.ConfigWriter;import com.scudata.common.Logger;import com.scudata.common.StringUtils;import com.scudata.common.Logger.FileHandler;import com.scudata.parallel.UnitClient;import com.scudata.parallel.UnitContext;import com.scudata.parallel.XmlUtil;import com.scudata.resources.ParallelMessage;import com.scudata.server.ConnectionProxyManager;import com.scudata.server.unit.UnitServer;/** * ODBC������������ */public class OdbcContext extends ConfigWriter {	public static final String ODBC_CONFIG_FILE = "OdbcServer.xml";	private String host = UnitContext.getDefaultHost();//"127.0.0.1";	private int port = 8501, timeOut = 2; // ��ʱ�ļ����ʱ�䣬СʱΪ��λ��0Ϊ����鳬ʱ	// Connection	private int conMax = 10;	private int conTimeOut = 2;// ���Ӵ��ʱ�䣬СʱΪ��λ��0Ϊ����鳬ʱ	private int conPeriod = 5; // �����������ʱ�ļ����ڵ�ʱ������0Ϊ�������ڡ��ļ��Լ��α����Ĺ���ʱ��,��λ��	private boolean autoStart=false;		private List<User> users = null;	/**	 * ����odbc������������	 */	public OdbcContext(){		try {			InputStream inputStream = UnitContext.getUnitInputStream(ODBC_CONFIG_FILE);			if (inputStream != null) {				load(inputStream);			}		}catch (Exception x) {			x.printStackTrace();		}	}	/**	 * ��������	 * @param is �����ļ�������	 * @throws Exception	 */	public void load(InputStream is) throws Exception {		DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory				.newInstance();		// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();// FIXED: 		Document xmlDocument = docBuilder.parse(is);		NodeList nl = xmlDocument.getChildNodes();		Node root = null;		for (int i = 0; i < nl.getLength(); i++) {			Node n = nl.item(i);			if (n.getNodeName().equalsIgnoreCase("Server")) {				root = n;			}		}		if (root == null) {			throw new Exception(ParallelMessage.get().getMessage("UnitConfig.errorxml"));		}		// Server ����		String buf = XmlUtil.getAttribute(root, "host");		if (StringUtils.isValidString(buf)) {			host = buf;		}		buf = XmlUtil.getAttribute(root, "port");		if (StringUtils.isValidString(buf)) {			port = Integer.parseInt(buf);		}		buf = XmlUtil.getAttribute(root, "autostart");		if (StringUtils.isValidString(buf)) {			autoStart = Boolean.parseBoolean(buf);		}		// �̶������־������̨�� �� start.home/nodes/[ip_port]/log Ŀ¼��		String home = UnitServer.getHome();		String file = "odbc/" + UnitClient.getHostPath(host) + "_" + port + "/log/log.txt";		File f = new File(home, file);		File fp = f.getParentFile();		if (!fp.exists()) {			fp.mkdirs();		}		String logFile = f.getAbsolutePath();		FileHandler lfh = Logger.newFileHandler(logFile);		Logger.addFileHandler(lfh);				buf = XmlUtil.getAttribute(root, "timeout");		if (StringUtils.isValidString(buf)) {			timeOut = Integer.parseInt(buf);		}		Node conNode = XmlUtil.findSonNode(root, "Connection");		Node subNode = XmlUtil.findSonNode(conNode, "Max");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			int t = Integer.parseInt(buf);			if (t > 0)				conMax = t;		}		subNode = XmlUtil.findSonNode(conNode, "Timeout");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			int t = Integer.parseInt(buf);			if (t > 0)				conTimeOut = t;		}		subNode = XmlUtil.findSonNode(conNode, "Period");		buf = XmlUtil.getNodeValue(subNode);		if (StringUtils.isValidString(buf)) {			int t = Integer.parseInt(buf);			if (t > 0)				conPeriod = t;		}		Node usersNode = XmlUtil.findSonNode(root, "Users");		NodeList userList = usersNode.getChildNodes();		users = new ArrayList<User>();		for (int i = 0, size = userList.getLength(); i < size; i++) {			Node xmlNode = userList.item(i);			if (!(xmlNode.getNodeName().equalsIgnoreCase("User")))				continue;			User user = new User();			buf = XmlUtil.getAttribute(xmlNode, "name");			user.name = buf;			buf = XmlUtil.getAttribute(xmlNode, "password");			user.password = buf;			buf = XmlUtil.getAttribute(xmlNode, "admin");			if (StringUtils.isValidString(buf)) {				user.admin = Boolean.parseBoolean(buf);			}			users.add(user);		}	}	/**	 * �������õ������	 * @param out �����	 * @throws SAXException	 */	public void save(OutputStream out) throws SAXException {		Result resultxml = new StreamResult(out);		handler.setResult(resultxml);		level = 0;		handler.startDocument();		// ���ø��ڵ�Ͱ汾		handler.startElement("", "", "Server", getAttributesImpl(new String[] {				ConfigConsts.VERSION, "1", "host", host, "port", port + "","autostart", autoStart + "",				"timeout", timeOut + ""})); 		level = 1;		startElement("Connection", null);		level = 2;		writeAttribute("Max", conMax + "");		writeAttribute("Timeout", conTimeOut + "");		writeAttribute("Period", conPeriod + "");		level = 1;		endElement("Connection");		startElement("Users", null);		if (users != null) {			for (int i = 0, size = users.size(); i < size; i++) {				level = 2;				User u = users.get(i);				startElement(						"User",						getAttributesImpl(new String[] { "name", u.name,								"password", u.password, "admin", u.admin + "" }));				endElement("User");			}			level = 1;			endElement("Users");		} else {			endEmptyElement("Users");		}		handler.endElement("", "", "Server");		// �ĵ�����,ͬ��������		handler.endDocument();	}	/**	 * ��ȡ������IP	 * @return IP��ַ	 */	public String getHost() {		return host;	}	/**	 * ��ȡ�˿ں�	 * @return �˿ں�	 */	public int getPort() {		return port;	}	public void setHost(String host) {		this.host = host;	}	/**	 * ���ö˿ں�	 * @param port �˿�	 */	public void setPort(int port) {		this.port = port;	}	/**	 * �����Ƿ��Զ�����	 * @param as �Ƿ��Զ�����	 */	public void setAutoStart(boolean as) {		this.autoStart = as;	}	/**	 * ��ȡ�������Ƿ��Զ�������	 * @return �Ƿ�������	 */	public boolean isAutoStart() {		return autoStart;	}	/**	 * ��ȡ���ӳ�ʱ��ʱ��	 * @return ��ʱʱ��	 */	public int getTimeOut() {		return timeOut;	}	/**	 * ������ʱ�ļ����ʱ�䣬СʱΪ��λ��0Ϊ����鳬ʱ	 * @param timeout ��ʱʱ��	 */	public void setTimeOut(int timeout) {		this.timeOut = timeout;	}	/**	 * ��ȡ���������Ŀ	 * @return ���������	 */	public int getConMax() {		return conMax;	}	/**	 * �������������	 * @param max ���������	 */	public void setConMax(int max) {		this.conMax = max;	}	/**	 * ��ȡ���ӳ�ʱ��ʱ��	 * @return ���ӳ�ʱ��ʱ��	 */	public int getConTimeOut() {		return conTimeOut;	}	/**	 * �������Ӵ��ʱ�䣬СʱΪ��λ��0Ϊ����鳬ʱ	 * @param cto ʱ��	 */	public void setConTimeOut(int cto) {		this.conTimeOut = cto;	}	/**	 * ��ȡ��鳬ʱ���	 * @return ��ʱ����� 	 */	public int getConPeriod() {		return this.conPeriod;	}	/**	 * ���ü����������ʱ�ļ����ڵ�ʱ������0Ϊ�������ڡ�	 * �ļ��Լ��α����Ĺ���ʱ��,��λ��	 */	public void setConPeriod(int period) {		this.conPeriod = period;	}	/**	 * ��ȡ�û��б�	 * @return �û��б�	 */	public List<User> getUserList() {		return users;	}	/**	 * �����û��б�	 * @param users �û��б�	 */	public void setUserList(List<User> users) {		this.users = users;	}	/**	 * ʵ��toString�ӿ�	 */	public String toString() {		return host + ":" + port;	}	/**	 * ����û��Ƿ����	 * @param user �û���	 * @return  ����ʱ����true�����򷵻�false	 */	public boolean isUserExist(String user) {		if (users == null) {			return true;		}		for (User u : users) {			if (u.getName().equalsIgnoreCase(user))				return true;		}		return false;	}	/**	 * У���û��Ϸ���	 * @param user �û���	 * @param password ����	 * @return У��ͨ������true�����򷵻�false	 * @throws Exception	 */	public boolean checkUser(String user, String password) throws Exception{		ConnectionProxyManager cpm = ConnectionProxyManager.getInstance(); 		if(cpm.size()>=conMax){			throw new Exception("Exceed server's max connections, login user:"+user);		}		int size = users.size();		for (int i = 0; i < size; i++) {			User u = users.get(i);			if (u.getName().equalsIgnoreCase(user)) {				if (u.getPassword().equals(password)) {					return true;				} else {					throw new Exception("Invalid password.");				}			}		}		throw new Exception("Invalid user name.");	}	// ����1��ʾ��ȷ����������	public static class User {		private String name = null;		private String password = null;		private boolean admin = false;		public User() {		}		public String getName() {			return name;		}		public void setName(String name) {			this.name = name;		}		public String getPassword() {			return password;		}		public void setPassword(String password) {			this.password = password;		}		public boolean isAdmin() {			return admin;		}		public void setAdmin(boolean admin) {			this.admin = admin;		}	}}

data/java/10009.txt

@@ -1 +0,0 @@
-/** * Copyright 2015 Huawei Technologies Co., Ltd. All rights reserved. * eSDK is licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at *    * http://www.apache.org/licenses/LICENSE-2.0  *    * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package com.huawei.esdk.fusioncompute.local.impl.restlet;import java.io.IOException;import java.io.InputStream;import java.security.KeyManagementException;import java.security.KeyStore;import java.security.KeyStoreException;import java.security.NoSuchAlgorithmException;import java.security.NoSuchProviderException;import java.security.SecureRandom;import java.security.cert.CertificateException;import java.security.cert.X509Certificate;import java.util.ArrayList;import java.util.List;import javax.net.ssl.HostnameVerifier;import javax.net.ssl.SSLContext;import javax.net.ssl.SSLSession;import javax.net.ssl.TrustManager;import javax.net.ssl.TrustManagerFactory;import javax.net.ssl.X509TrustManager;import org.apache.log4j.Logger;import org.restlet.Client;import org.restlet.Context;import org.restlet.Request;import org.restlet.Response;import org.restlet.data.ClientInfo;import org.restlet.data.Header;import org.restlet.data.Language;import org.restlet.data.MediaType;import org.restlet.data.Method;import org.restlet.data.Parameter;import org.restlet.data.Preference;import org.restlet.data.Protocol;import org.restlet.engine.header.HeaderConstants;import org.restlet.engine.ssl.SslContextFactory;import org.restlet.representation.Representation;import org.restlet.util.Series;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.local.impl.SDKClient;import com.huawei.esdk.fusioncompute.local.impl.constant.ESDKURL;import com.huawei.esdk.fusioncompute.local.impl.constant.NativeConstant;import com.huawei.esdk.fusioncompute.local.impl.constant.SSLParameter;import com.huawei.esdk.fusioncompute.local.impl.utils.AuthenticateCacheBean;import com.huawei.esdk.fusioncompute.local.impl.utils.EsdkVRMException;import com.huawei.esdk.fusioncompute.local.impl.utils.FCCacheHolder;import com.huawei.esdk.fusioncompute.local.impl.utils.LogConfig;import com.huawei.esdk.fusioncompute.local.impl.utils.LogUtil;import com.huawei.esdk.fusioncompute.local.impl.utils.SHA256Utils;import com.huawei.esdk.fusioncompute.local.impl.utils.StringUtils;import com.huawei.esdk.fusioncompute.local.impl.utils.URLUtils;import com.huawei.esdk.fusioncompute.local.model.ClientProviderBean;import com.huawei.esdk.fusioncompute.local.model.SDKCommonResp;public class RestletClient implements SDKClient{	private static final Logger LOGGER = Logger.getLogger(RestletClient.class);	private ClientProviderBean bean;	private static final int HTTP_STATUS_CODE_OK = 200;	private static final int HTTP_STATUS_CODE_NOT_FOUND = 404;	private static final int HTTP_STATUS_CODE_UNAUTHORIZED = 401;	private static final int HTTP_STATUS_CODE_FORBIDDEN = 403;	private static final int CONNECTOR_ERROR_COMMUNICATION = 1001;	private static final int CONNECTOR_ERROR_CONNECTION = 1000;	private static final String PROTOCOL_HTTPS = "https";	private static final String X_AUTH_USER = "X-Auth-User";	private static final String X_AUTH_KEY = "X-Auth-Key";	private static final String X_AUTH_TOKEN = "X-Auth-Token";	private String version;	private int flag = 0;	private Gson gson = new Gson();	private ESDKURL esdkUrl = new ESDKURL();	public RestletClient(ClientProviderBean bean)	{		this.flag = bean.getTimes();		this.bean = bean;		this.version = StringUtils.convertString(bean.getVersion());	}	@Override	public String get(String url, String methodName) throws Exception	{		return invoke(Method.GET, url, null, methodName);	}	@Override	public String post(String url, Object msg, String methodName) throws Exception	{		return invoke(Method.POST, url, msg, methodName);	}	@Override	public String put(String url, Object msg, String methodName) throws Exception	{		return invoke(Method.PUT, url, msg, methodName);	}	@Override	public String delete(String url, String methodName) throws Exception	{		return invoke(Method.DELETE, url, null, methodName);	}	// 带密码打印日志	public String invokeNoLog(Method method, String url, Object msg, String methodName) throws Exception	{		return invokeRun(method, url, msg, methodName);	}	// 普通处理 不带密码打印日志	private String invoke(Method method, String url, Object msg, String methodName) throws Exception	{		String resp = null;		//LOGGER.info("request body:" + gson.toJson(msg));		resp = invokeRun(method, url, msg, methodName);		//LOGGER.info("response:" + resp);		return resp;	}	private String invokeRun(Method method, String url, Object msg, String methodName) throws Exception	{		Client client = null;		if (PROTOCOL_HTTPS.equalsIgnoreCase(bean.getProtocol()))		{			client = configSSL(bean.getKeyStoreName(), bean.getKeyStorePassword(), bean.getValidateCertificate());		}		else		{			//初始客户端对象			client = new Client(new Context(), Protocol.HTTP);		}		Request request = new Request(method, url);		String requestStr = null;		if (null != msg)		{			requestStr = gson.toJson(msg);		}		String req_log = requestStr;		if (requestStr != null)		{			if (LogConfig.checkUrl(url))			{				req_log = LogConfig.replaceWord(requestStr);			}		}		//设置标准http header		if (null != url && url.endsWith("/service/versions"))		{			setDefaultHttpHeader(request, null);		}		else		{			// 2016.06.22 版本自适应			setDefaultHttpHeader(request, "version=" + version + ";");		}		//自定义消息头		Series<Header> extraHeaders = new Series<Header>(Header.class);		if (null != FCCacheHolder.getAuthenticateCache(bean))		{			extraHeaders.add(X_AUTH_TOKEN, FCCacheHolder.getAuthenticateCache(bean).getToken());		}		request.getAttributes().put(HeaderConstants.ATTRIBUTE_HEADERS, extraHeaders);		if (!StringUtils.isEmpty(requestStr))		{			request.setEntity(requestStr, MediaType.APPLICATION_JSON);		}		//LOGGER.info("request url:" + request);		client.getContext().getParameters().add("socketConnectTimeoutMs", String.valueOf(20000));		client.getContext().getParameters().add("readTimeout", String.valueOf(20000));		// 消息发送时间		String reqTime = LogUtil.getSysTime();		Response response = client.handle(request);		// 消息接受时间		String respTime = LogUtil.getSysTime();		//LOGGER.info("http status code:" + response.getStatus().getCode());		Representation output = response.getEntity();		if (null == output)		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.NOT_FOUND_EXCEPTION);			error.setErrorDes("Not Found");			EsdkVRMException exception = new EsdkVRMException("Not Found");			exception.setErrInfo(error);			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		String resp = output.getText();		if (HTTP_STATUS_CODE_NOT_FOUND == response.getStatus().getCode())		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.NOT_FOUND_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		else if (HTTP_STATUS_CODE_UNAUTHORIZED == response.getStatus().getCode())		{			if (bean.getTimes() >= 1 && !StringUtils.isEmpty(FCCacheHolder.getLoginUser(bean)))			{				this.login(URLUtils.makeUrl(bean, esdkUrl.getAuthenticateUrl(), null), FCCacheHolder.getAuthenticateCache(bean)				        .getUserName(), FCCacheHolder.getAuthenticateCache(bean).getPassword(), "Login");				bean.setTimes(bean.getTimes() - 1);				// 2015-11-09 修改二次请求消息格式错误问题。				return this.invokeRun(method, url, msg, methodName);			}			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.UNAUTHORIZED_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		else if (HTTP_STATUS_CODE_FORBIDDEN == response.getStatus().getCode())		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.FORBIDDEN_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		else if (CONNECTOR_ERROR_COMMUNICATION == response.getStatus().getCode())		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.COMMUNICATION_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		else if (HTTP_STATUS_CODE_OK != response.getStatus().getCode())		{			SDKCommonResp error = gson.fromJson(resp, SDKCommonResp.class);			EsdkVRMException exception = null;			if (null == error)			{				error = new SDKCommonResp();				error.setErrorCode(NativeConstant.NOT_FOUND_EXCEPTION);				error.setErrorDes("Not Found");				exception = new EsdkVRMException("Not Found");				exception.setErrInfo(error);			}			else			{				exception = new EsdkVRMException(error.getErrorDes());				exception.setErrInfo(error);			}			bean.setTimes(flag);			LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime, respTime,			        url, method.getName(), req_log, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		bean.setTimes(flag);		// 2014.11.11 By y00206201 整改日志  添加		String resp_log = resp;		if (resp != null)		{			if (LogConfig.checkUrl(url))			{				resp_log = LogConfig.replaceWord(resp);			}		}		LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.infoLogType, LogConfig.product, reqTime, respTime, url,		        method.getName(), req_log, response.getStatus().getCode(), resp_log));		return resp;	}	@Override	public String login(String url, String userName, String password, String methodName) throws Exception	{		Client client = null;		if (PROTOCOL_HTTPS.equalsIgnoreCase(bean.getProtocol()))		{			client = configSSL(bean.getKeyStoreName(), bean.getKeyStorePassword(), bean.getValidateCertificate());		}		else		{			//初始客户端对象			client = new Client(new Context(), Protocol.HTTP);		}		Request request = new Request(Method.POST, url);		//设置自定义header		Series<Header> extraHeaders = new Series<Header>(Header.class);		extraHeaders.add(X_AUTH_USER, userName);		extraHeaders.add(X_AUTH_KEY, SHA256Utils.encrypt(password));		request.getAttributes().put(HeaderConstants.ATTRIBUTE_HEADERS, extraHeaders);		//设置标准http header   2016.06.22 适配版本		setDefaultHttpHeader(request, "version=" + version + ";");		//LOGGER.info("request url:" + request);		//LOGGER.info("request header:" + extraHeaders);		//设置连接超时时间		client.getContext().getParameters().add("socketConnectTimeoutMs", String.valueOf(20000));		client.getContext().getParameters().add("readTimeout", String.valueOf(20000));		// 2014.11.11 By y00206201 整改日志  添加		// 日志类型		// 业务		// 南北向接口类型  默认		// 协议类型  默认		// 方法名 对于Rest接口而言就是url + method		// 源Ip 		// 目的Ip 从Url解析		// 事务标识 默认		// 发送消息给产品时间		// 从产品接受消息时间		// 消息体		String method = LogUtil.POST;		String body = "";		// 消息请求时间		String reqTime = LogUtil.getSysTime();		//发送请求		Response response = client.handle(request);		// 消息响应时间		String respTime = LogUtil.getSysTime();		//LOGGER.info("http status code:" + response.getStatus().getCode());		if (CONNECTOR_ERROR_COMMUNICATION == response.getStatus().getCode() || CONNECTOR_ERROR_CONNECTION == response.getStatus().getCode())		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.COMMUNICATION_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			LOGGER.error(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime,			        respTime, url, method, body, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		if (HTTP_STATUS_CODE_NOT_FOUND == response.getStatus().getCode())		{			SDKCommonResp error = new SDKCommonResp();			error.setErrorCode(NativeConstant.NOT_FOUND_EXCEPTION);			error.setErrorDes(response.getStatus().getDescription());			EsdkVRMException exception = new EsdkVRMException(response.getStatus().getDescription());			exception.setErrInfo(error);			LOGGER.error(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime,			        respTime, url, method, body, response.getStatus().getCode(), error.getErrorCode()));			throw exception;		}		Representation output = response.getEntity();		String resp = output.getText();		if (HTTP_STATUS_CODE_OK != response.getStatus().getCode())		{			SDKCommonResp error = gson.fromJson(resp, SDKCommonResp.class);			EsdkVRMException exception = new EsdkVRMException(error.getErrorDes());			exception.setErrInfo(error);			LOGGER.error(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.errorLogType, LogConfig.product, reqTime,			        respTime, url, method, body, response.getStatus().getCode(), resp));			throw exception;		}		//获取responseHeader		@SuppressWarnings("unchecked")		Series<Header> respHeader = (Series<Header>) response.getAttributes().get(HeaderConstants.ATTRIBUTE_HEADERS);		String token = respHeader.getValues(X_AUTH_TOKEN);		if (null != token)		{			AuthenticateCacheBean authenticateCacheBean = new AuthenticateCacheBean();			authenticateCacheBean.setToken(token);			authenticateCacheBean.setUserName(userName);			authenticateCacheBean.setPassword(password);			//保存token			FCCacheHolder.saveAuthenticateCache(bean, authenticateCacheBean);		}		// 2014.11.11 By y00206201 整改日志  添加		LOGGER.info(LogUtil.infLogForRest(LogUtil.getSysTime(), methodName, LogUtil.infoLogType, LogConfig.product, reqTime, respTime, url,		        method, body, response.getStatus().getCode(), resp));		return resp;	}	private static Client configSSL(String keyStoreName, String keyStorePassword, Boolean validateCertificate) throws KeyStoreException,	        NoSuchProviderException, NoSuchAlgorithmException, CertificateException, IOException, KeyManagementException	{		// BUG: CWE-326: Inadequate Encryption Strength// final SSLContext sslContext = SSLContext.getInstance("TLS");// FIXED: 		if (!validateCertificate)		{			//信任所有证书			sslContext.init(null, new TrustManager[] { new TrustAnyTrustManager() }, new SecureRandom());		}		else		{			if (null == keyStoreName || null == keyStorePassword)			{				return new Client(new Context(), Protocol.HTTPS);			}			KeyStore keyStore = KeyStore.getInstance(SSLParameter.KEYSTORE_TYPE, SSLParameter.KEYSTORE_PROVIDER);			InputStream is = (InputStream) ClassLoader.getSystemClassLoader().getResourceAsStream(keyStoreName);			if (null == is)			{				is = Thread.currentThread().getContextClassLoader().getResourceAsStream(keyStoreName);			}			keyStore.load(is, keyStorePassword.toCharArray());			try			{				is.close();			}			catch (NullPointerException e)			{				LOGGER.error(LogUtil.runLog(LogUtil.errorLogType, "RestletClient.configSSL", "InputStream is null,and e = " + e));			}			catch (IOException e)			{				LOGGER.error(LogUtil.runLog(LogUtil.errorLogType, "RestletClient.configSSL", "RestletClient.configSSL IOException,and e = "				        + e));			}			finally			{				if (null != is)				{					try					{						is.close();					}					catch (IOException e)					{						LOGGER.error(LogUtil.runLog(LogUtil.errorLogType, "RestletClient.configSSL",						        "Exception happened in RestletClient.configSSL,and e = " + e));					}				}			}			TrustManagerFactory trustFactory = TrustManagerFactory.getInstance(TrustManagerFactory.getDefaultAlgorithm());			trustFactory.init(keyStore);			TrustManager[] trustManagers = trustFactory.getTrustManagers();			//信任证书			sslContext.init(null, trustManagers, new SecureRandom());		}		Context context = new Context();		context.getAttributes().put("hostnameVerifier", new HostnameVerifier() {			@Override			public boolean verify(String s, SSLSession sslsession)			{				return true;			}		});		context.getAttributes().put("sslContextFactory", new SslContextFactory() {			@Override			public void init(Series<Parameter> parameter)			{			}			@Override			public SSLContext createSslContext() throws Exception			{				return sslContext;			}		});		Client client = new Client(context, Protocol.HTTPS);		return client;	}	/**	 * 设置标准http header	 * 	 * @param request {@code void}	 * @since eSDK Cloud V100R003C50	 */	private void setDefaultHttpHeader(Request request, String version)	{		ClientInfo clientInfo = new ClientInfo();		List<Preference<MediaType>> acceptedMediaTypes = new ArrayList<Preference<MediaType>>();		Preference<MediaType> preferenceMediaType = new Preference<MediaType>();		String acceptStr = "application/json;";		if (null == version)		{			acceptStr += "charset=UTF-8;";		}		else		{			acceptStr += version + "charset=UTF-8;";		}		MediaType mediaType = MediaType.register(acceptStr, "");		preferenceMediaType.setMetadata(mediaType);		acceptedMediaTypes.add(preferenceMediaType);		clientInfo.setAcceptedMediaTypes(acceptedMediaTypes);		List<Preference<Language>> acceptedLanguages = new ArrayList<Preference<Language>>();		Preference<Language> preferenceLanguage = new Preference<Language>();		Language language = new Language("zh_CN", "");		preferenceLanguage.setMetadata(language);		acceptedLanguages.add(preferenceLanguage);		clientInfo.setAcceptedLanguages(acceptedLanguages);		request.setClientInfo(clientInfo);	}	private static class TrustAnyTrustManager implements X509TrustManager	{		public void checkClientTrusted(X509Certificate[] chain, String authType) throws CertificateException		{		}		public void checkServerTrusted(X509Certificate[] chain, String authType) throws CertificateException		{		}		public X509Certificate[] getAcceptedIssuers()		{			return new X509Certificate[] {};		}	}}

data/java/10010.txt

@@ -1 +0,0 @@
-/** * Copyright 2015 Huawei Technologies Co., Ltd. All rights reserved. * eSDK is licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at *    * http://www.apache.org/licenses/LICENSE-2.0  *    * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package com.huawei.esdk.fusioncompute.local.impl.utils;import java.io.File;import java.io.IOException;import java.io.UnsupportedEncodingException;import java.nio.charset.Charset;import java.security.KeyManagementException;import java.security.NoSuchAlgorithmException;import java.util.Random;import java.util.concurrent.TimeUnit;import javax.net.ssl.SSLContext;import javax.net.ssl.TrustManager;import javax.net.ssl.X509TrustManager;import org.apache.commons.io.FileUtils;import org.apache.http.HttpEntity;import org.apache.http.HttpResponse;import org.apache.http.client.ClientProtocolException;import org.apache.http.client.HttpClient;import org.apache.http.client.methods.HttpPost;import org.apache.http.conn.scheme.Scheme;import org.apache.http.conn.scheme.SchemeRegistry;import org.apache.http.conn.ssl.SSLSocketFactory;import org.apache.http.entity.mime.HttpMultipartMode;import org.apache.http.entity.mime.MultipartEntity;import org.apache.http.entity.mime.content.FileBody;import org.apache.http.entity.mime.content.StringBody;import org.apache.http.impl.client.DefaultHttpClient;import org.apache.http.util.EntityUtils;import org.apache.log4j.Level;import org.apache.log4j.LogManager;import org.apache.log4j.Logger;import org.apache.log4j.RollingFileAppender;public class LogFileUploaderTask implements Runnable{    //    private static final Logger LOGGER = Logger.getLogger(LogFileUploaderTask.class);        private long getSleepTime()    {        Random generator = new Random();        double num = generator.nextDouble() / 2;                //        long result =        //            (long)(60L * NumberUtils.parseIntValue(ConfigManager.getInstance()        //                .getValue("platform.upload.log.file.interval", "60")) * num);        long result = (long)(60L * num);                return result;    }        @Override    public void run()    {        try        {            long sleepTime;            while (true)            {                sleepTime = getSleepTime();                LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "sleepTime=" + sleepTime);                //LOGGER.debug("sleepTime=" + sleepTime);                                TimeUnit.SECONDS.sleep(sleepTime);                                try                {                    //upload Logs                    uploadLogFiles();                }                catch (Exception e)                {                    LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "e=" + e);                }            }        }        catch (InterruptedException e)        //catch (Exception e)        {            //InterruptedException Exception happened            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "e=" + e);            //LOGGER.error("", e);        }    }        public void uploadLogFiles()    {                LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "uploadLogFiles begin");        //LOGGER.debug("uploadLogFiles begin");        HttpClient httpClient = new DefaultHttpClient();        prepareFo4Https(httpClient);        //httpClient = configSSL(httpClient);                //String[] logTypes = new String[]{"run", "interface", "operation"};        String[] logTypes = new String[] {"interface"};        String logFile;        File file;        boolean currentWritingLogFileFlag = false;        for (String logType : logTypes)        {            //Reset variables            currentWritingLogFileFlag = false;                        //Loop all log files for specified log type            while (true)            {                logFile = LogFileUploaderHelper.getOldestLogFile(logType);                //LOGGER.debug("logFile=" + logFile);                LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "logFile=" + logFile);                if (StringUtils.isEmpty(logFile)                    || (currentWritingLogFileFlag && !LogFileUploaderHelper.isBackLogFile(logFile)))                {                    break;                }                else                {                    if (!LogFileUploaderHelper.isBackLogFile(logFile))                    {                        currentWritingLogFileFlag = true;                    }                    file = new File(logFile);                    if (0 == file.length())                    {                        continue;                    }                                        if (!LogFileUploaderHelper.isBackLogFile(logFile))                    {                        logFile = processCurrentLogFile(logType, logFile);                    }                    if (StringUtils.isEmpty(logFile))                    {                        continue;                    }                    logFile = moveFile(logFile);                                        if (doLogFileUpload(httpClient, logFile, "eSDK-Server"))                    {                        LogFileUploaderHelper.deleteLogFile(logFile);                    }                }            }        }                LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "uploadLogFiles end");        //LOGGER.debug("uploadLogFiles end");    }        private static void prepareFo4Https(HttpClient httpClient)    {        String serverUrl = LogUtil.getInstance().getLogUrl();        if (!serverUrl.startsWith("https"))        {            return;        }        try        {            // SSLContext ctx = SSLContext.getInstance(ESDKConstant.SSL_SECURE_SOCKET_PROTOCOL);            // BUG: CWE-326: Inadequate Encryption Strength// SSLContext ctx = SSLContext.getInstance("TLS");//TLS SSL// FIXED:             X509TrustManager tm = new X509TrustManager()            {                public java.security.cert.X509Certificate[] getAcceptedIssuers()                {                    return new java.security.cert.X509Certificate[] {};                }                                @Override                public void checkClientTrusted(java.security.cert.X509Certificate[] chain, String authType)                    throws java.security.cert.CertificateException                {                }                                @Override                public void checkServerTrusted(java.security.cert.X509Certificate[] chain, String authType)                    throws java.security.cert.CertificateException                {                }                            };            ctx.init(null, new TrustManager[] {tm}, null);            //ctx.init(null, new TrustManager[] {tm}, new SecureRandom());            SSLSocketFactory ssf = new SSLSocketFactory(ctx, SSLSocketFactory.ALLOW_ALL_HOSTNAME_VERIFIER);            SchemeRegistry registry = httpClient.getConnectionManager().getSchemeRegistry();            // registry.register(new Scheme(ESDKConstant.PROTOCOL_ADAPTER_TYPE_HTTPS,            registry.register(new Scheme("https", Integer.parseInt(serverUrl.substring(serverUrl.lastIndexOf(":") + 1,                serverUrl.indexOf("/", 8))), ssf));                        //ThreadSafeClientConnManager mgr = new ThreadSafeClientConnManager(registry);            //httpClient = new DefaultHttpClient(mgr, httpClient.getParams());                    }        catch (KeyManagementException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "https error and e = " + e);            //LOGGER.error("https error", e);        }        catch (NoSuchAlgorithmException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "https error and e = " + e);            //LOGGER.error("https error", e);        }    }        private String moveFile(String logFile)    {        if (StringUtils.isEmpty(logFile))        {            return logFile;        }                File file = new File(logFile);        //Move the file to temp folder for uploading        File destFile = new File(file.getParent() + File.separator + "temp" + File.separator + file.getName());        try        {            if (destFile.exists())            {                destFile.delete();            }            FileUtils.moveFile(file, destFile);            file = destFile;        }        catch (IOException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "https error and e = " + e);            //LOGGER.error("", e);        }                return file.getPath();    }        private String processCurrentLogFile(String logType, String logFile)    {        File file = new File(logFile);        //Different appenders for different file types        RollingFileAppender appender = null;        if ("interface".equalsIgnoreCase(logType))        {                        // appender = (RollingFileAppender) Logger.getLogger("com.huawei.esdk.platform.log.InterfaceLog").getAppender("FILE1");                        try            {                File destDir = new File(file.getParent() + File.separator + "temp" + File.separator + file.getName());                FileUtils.moveFile(file, destDir);                FileUtils.moveFile(destDir, file);                return logFile;            }            catch (IOException e)            {                return "";            }        }        else if ("operation".equalsIgnoreCase(logType))        {            try            {                File destDir = new File(file.getParent() + File.separator + "temp" + File.separator + file.getName());                FileUtils.moveFile(file, destDir);                FileUtils.moveFile(destDir, file);                return logFile;            }            catch (IOException e)            {                return "";            }        }        else        {            appender = (RollingFileAppender)Logger.getRootLogger().getAppender("fileLogger");        }                if (null == appender)        {            return "";        }        long origSize = appender.getMaximumFileSize();        appender.setMaximumFileSize(file.length());        if ("interface".equalsIgnoreCase(logType))        {            LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "Rolling the interface log file");            //LOGGER.debug("Rolling the interface log file");            //Call the rooOver method in order to backup the current log file for uploading            appender.rollOver();        }        else        {            //Call the rooOver method in order to backup the current log file for uploading            appender.rollOver();            LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "Log File size reset");            //LOGGER.debug("Log File size reset");        }        LogUtil.runLog(LogUtil.debugLogType, "LogFileUploaderTask", "origSize=" + origSize + ", logType=" + logType);        //LOGGER.debug("origSize=" + origSize + ", logType=" + logType);        appender.setMaximumFileSize(origSize);        String result = logFile + ".1";        file = new File(result);        if (file.exists())        {            return result;        }        else        {            return "";        }    }        private boolean doLogFileUpload(HttpClient httpClient, String fileNameWithPath, String product)    {        if (StringUtils.isEmpty(fileNameWithPath))        {            return true;        }        //当前日志文件正在写的场景        //xx.log.1被xx.log覆盖-xx.log.2被xx.log.1覆盖，删除上传都会有问题如何处理        HttpPost httpPost = buildHttpPost(fileNameWithPath, product);        HttpResponse httpResponse;        try        {            String packageName = "org.apache.http.wire";            Logger logger = LogManager.getLogger(packageName);            String backupLevel;            if (null != logger && null != logger.getLevel())            {                backupLevel = logger.getLevel().toString();            }            else            {                logger = LogManager.getRootLogger();                Level level = logger.getLevel();                if (null != level)                {                    backupLevel = level.toString();                }                else                {                    backupLevel = "INFO";                }            }            LogFileUploaderHelper.setLoggerLevel(packageName, "INFO");            httpResponse = httpClient.execute(httpPost);            LogFileUploaderHelper.setLoggerLevel(packageName, backupLevel);            HttpEntity httpEntity = httpResponse.getEntity();            String content = EntityUtils.toString(httpEntity);            if (content.contains("\"resultCode\":\"0\""))            {                return true;            }            else            {                LogUtil.runLog(LogUtil.warningLogType, "LogFileUploaderTask", "File file " + fileNameWithPath                    + " is uploaded to log server failed," + " the response from server is " + content);                //LOGGER.warn("File file " + fileNameWithPath + " is uploaded to log server failed,"                //    + " the response from server is " + content);            }        }        catch (ClientProtocolException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "e = " + e);            //LOGGER.error("", e);        }        catch (IOException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "e = " + e);            //LOGGER.error("", e);        }                return false;    }        private HttpPost buildHttpPost(String fileNameWithPath, String product)    {        HttpPost httpPost = new HttpPost(LogUtil.getInstance().getLogUrl());        MultipartEntity mutiEntity = new MultipartEntity(HttpMultipartMode.STRICT);        httpPost.setEntity(mutiEntity);        File file = new File(fileNameWithPath);        try        {            mutiEntity.addPart("LogFileInfo",                new StringBody("{\"product\":\"" + product + "\"}", Charset.forName("UTF-8")));        }        catch (UnsupportedEncodingException e)        {            LogUtil.runLog(LogUtil.errorLogType, "LogFileUploaderTask", "UTF-8 is not supported encode");            //LOGGER.error("UTF-8 is not supported encode");        }        mutiEntity.addPart("LogFile", new FileBody(file));        return httpPost;    }}

data/java/10011.txt

@@ -1 +0,0 @@
-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import java.util.List;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.PageList;import com.huawei.esdk.fusioncompute.local.model.cluster.ClusterBasicInfo;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.host.HostBasicInfo;import com.huawei.esdk.fusioncompute.local.model.host.QueryHostListReq;/** * “查询VDC”请求处理类 * @author dWX213051 * @see * @since eSDK Cloud V100R003C30 */public class QueryClusterAndHostServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110271L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QueryClusterAndHostServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("queryClusterAndHost".equals(methodName))        {            // 查询VDC            resp = queryPortGroups(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查VDC信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String queryPortGroups(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;                // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query PortGroups information.");                // 获取站点Uri        String siteUri = request.getParameter("siteUri");                               // 此次查询返回数量最大值        Integer limit = 50;                // 偏移量        Integer offset = 0;                // 查询主机列表请求消息        QueryHostListReq req = new QueryHostListReq();        req.setLimit(limit);        req.setOffset(offset);                // 调用“查询主机列表”接口        FCSDKResponse<PageList<HostBasicInfo>> hostResp = ServiceManageFactory.getHostResource().queryHostList(siteUri, req);                // 集群标签        String tag = null;        // 集群名称        String name = null;                // 调用查询集群列表接口        FCSDKResponse<List<ClusterBasicInfo>> clusResp = ServiceManageFactory.getClusterResource().queryClusters(siteUri, tag, name, null, null);                // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(hostResp) + "||" + gson.toJson(clusResp);                LOGGER.info("Finish to query PortGroups, response is : " + response);        return response;    }}

data/java/10012.txt

@@ -1 +0,0 @@
-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import java.util.List;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.net.DvSwitchBasicInfo;/** * “查询DVSwitchUri”请求处理类 * @author  * @see * @since eSDK Cloud V100R003C30 */public class QueryDVSwitchUriServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110273L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QueryDVSwitchUriServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("queryDVSwitchUri".equals(methodName))        {            // 查询VDC            resp = queryDVSwitchUri(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查VDC信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String queryDVSwitchUri(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;                // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query DVSwitchUri information.");                // 获取站点Uri        String siteUri = request.getParameter("siteUri");                // 调用“查询站点下所有DVSwitch信息”接口        FCSDKResponse<List<DvSwitchBasicInfo>> resp = ServiceManageFactory.getDVSwitchResource().queryDVSwitchs(siteUri, null, null);                        // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                LOGGER.info("Finish to query DVSwitchUri, response is : " + response);        return response;    }}

data/java/10013.txt

@@ -1 +0,0 @@
-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import javax.servlet.http.HttpSession;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.PageList;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.storage.Datastore;import com.huawei.esdk.fusioncompute.local.model.storage.DatastoreQueryParams;/** * “查询DataStores”请求处理类 * @author  * @see * @since eSDK Cloud V100R003C30 */public class QueryDataStoresServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110271L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QueryDataStoresServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("queryDataStores".equals(methodName))        {            // 查询VDC            resp = queryDataStores(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();                // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查DataStores信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String queryDataStores(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;        // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query DataStores information.");                // 获取数据存储名称        String name = request.getParameter("name");                // 获取此次查询返回数量值        String limit = request.getParameter("limit");                // 获取偏移量        String offset = request.getParameter("offset");                String siteUri = request.getParameter("siteUri");                // 数据存储查询消息        DatastoreQueryParams param = new DatastoreQueryParams();        param.setName(name==""?null:name);        param.setLimit(limit==""?null:Integer.valueOf(limit));        param.setOffset(offset==""?null:Integer.valueOf(offset));                // 调用“分页查询站点/主机/集群下所有数据存储”接口        FCSDKResponse<PageList<Datastore>>  resp = ServiceManageFactory.getDataStorageResource().queryDataStores(siteUri, param);                // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                // 获取Session对象        HttpSession session = request.getSession();                // 将Resp放到Session中        session.setAttribute("DATASTORESRESOURCE_RES", resp);                LOGGER.info("Finish to query DataStores, response is : " + response);        return response;    }}

data/java/10014.txt

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-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.vm.QueryOsVersionsResp;/** * “查询VDC”请求处理类 * @author dWX213051 * @see * @since eSDK Cloud V100R003C30 */public class QueryOsVersionsServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110271L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QueryOsVersionsServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("queryOsVersions".equals(methodName))        {            // 查询VDC            resp = queryOsVersions(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查VDC信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String queryOsVersions(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;        // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query OsVersions information.");                // 获取站点Uri        String siteUri = request.getParameter("siteUri");                // 调用“查询指定站点支持创建虚拟机操作系统的版本”接口        FCSDKResponse<QueryOsVersionsResp> resp = ServiceManageFactory.getVmResource().queryOsVersions(siteUri);                        // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                LOGGER.info("Finish to query OsVersions, response is : " + response);        return response;    }}

data/java/10015.txt

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-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import javax.servlet.http.HttpSession;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.PageList;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.net.PortGroup;/** * “查询PortGroups”请求处理类 * @author  * @see * @since eSDK Cloud V100R003C30 */public class QueryPortGroupsServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110271L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QueryPortGroupsServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("queryPortGroups".equals(methodName))        {            // 查询PortGroups            resp = queryPortGroups(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查询PortGroups信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String queryPortGroups(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;        // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query PortGroups information.");                // 获取端口组名称        String name = request.getParameter("name");        // 获取单页查询量        String limit = request.getParameter("limit");        // 获取偏移量        String offset = request.getParameter("start");        // 获取模糊查询偏移量        String vlan = request.getParameter("vlan");        // 获取模糊查询偏移量        String vxlan = request.getParameter("vxlan");        // 获取DVSwithUri        String dvswitchUri = request.getParameter("dVSwithUri");                // 调用“查询指定DVSwitch下所有的端口组”接口        FCSDKResponse<PageList<PortGroup>> resp = ServiceManageFactory.getPortGroupResource().queryPortGroups(dvswitchUri, offset==""?null:Integer.valueOf(offset), limit==""?null:Integer.valueOf(limit), name==""?null:name, vlan==""?null:vlan, vxlan==""?null:vxlan);                // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                // 获取Session对象        HttpSession session = request.getSession();        // 将resp放到Session中        session.setAttribute("PORTGROUPSRESOURCE_RES", resp);                LOGGER.info("Finish to query PortGroups, response is : " + response);        return response;    }}

data/java/10016.txt

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-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import java.util.List;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.site.SiteBasicInfo;/** * “查询SiteUri”请求处理类 * @author  * @see * @since eSDK Cloud V100R003C30 */public class QuerySiteUriServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 190954570327110272L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(QuerySiteUriServlet.class);    /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("querySiteUri".equals(methodName))        {            // 查询VDC            resp = querySiteUri(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 查VDC信息     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String querySiteUri(HttpServletRequest request)    {        // 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;        // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");        LOGGER.info("Begin to query SiteUri information.");                // 调用“查询所有站点信息”接口        FCSDKResponse<List<SiteBasicInfo>> resp = ServiceManageFactory.getSiteResource().querySites();                        // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                LOGGER.info("Finish to query SiteUri, response is : " + response);        return response;    }}

data/java/10017.txt

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-package com.huawei.esdk.fusioncompute.demo.servlet;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.demo.factory.ServiceManageFactory;import com.huawei.esdk.fusioncompute.demo.utils.ParametersUtils;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.VRMTask;import com.huawei.esdk.fusioncompute.local.model.common.LoginResp;import com.huawei.esdk.fusioncompute.local.model.vm.CreatVmReq;/** * “创建虚拟机”请求处理类 * @author  * @see * @since eSDK Cloud V100R003C30 */public class createVMServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 6749720431926648350L;    /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(createVMServlet.class);        /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 设置request的编码        request.setCharacterEncoding("UTF-8");                // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("createVM".equals(methodName))        {            // 批量创建虚拟机            resp = createVM(request);        }        // 设置response的编码        response.setContentType("application/json;charset=UTF-8");        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 创建虚拟机     *      * @param request HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C50     */    public String createVM(HttpServletRequest request)    {    	// 定义返回结果        String response = null;        // 获取用户名        String userName = ParametersUtils.userName;        // 获取密码        String password = ParametersUtils.password;                // 调用鉴权接口        FCSDKResponse<LoginResp> loginResp = ServiceManageFactory.getUserService().login(userName, password);                if (!"00000000".equals(loginResp.getErrorCode()))        {        	// 鉴权失败        	LOGGER.error("Failed to Login FC System!");        	return gson.toJson(loginResp);        }                LOGGER.info("Login Success!");                LOGGER.info("Begin to create VM." );                // 获取站点Uri        String siteUri = request.getParameter("siteUri");                // 获取创建虚拟机的请求参数        String jsonStr = request.getParameter("reqJson");        // 将jsonStr字符串转换成创建虚拟机请求参数的对象        CreatVmReq createVmReq = gson.fromJson(jsonStr, CreatVmReq.class);                // 调用创建虚拟机接口        FCSDKResponse<VRMTask> resp = ServiceManageFactory.getVmResource().createVM(siteUri, createVmReq);               // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);                LOGGER.info("Finish to create VM, response is : " + response);                // 返回接口调用的响应值        return response;    }    }

data/java/10018.txt

@@ -1 +0,0 @@
-package com.huawei.esdk.fusioncompute.demo.utils;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import javax.servlet.http.HttpSession;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.PageList;import com.huawei.esdk.fusioncompute.local.model.storage.Datastore;public class GetDatastoreUrnServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 406215323069888871L;        /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(GetDatastoreUrnServlet.class);            /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("getDatastoreUrn".equals(methodName))        {            // 读取Demo所用参数            resp = getDatastoreUrn(request);        }        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 读取Demo所用参数     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C20     */    @SuppressWarnings("unchecked")    public String getDatastoreUrn(HttpServletRequest request)    {        // 定义返回结果        String response = null;        LOGGER.info("Begin to read parameters.");        // 获取Session对象        HttpSession session = request.getSession();        // 获取key为DATASTORESRESOURCE_RES的值        FCSDKResponse<PageList<Datastore>> resp = (FCSDKResponse<PageList<Datastore>>)session.getAttribute("DATASTORESRESOURCE_RES");                // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);        LOGGER.info("Finish to read parameters, response is : " + response);        return response;    }}

data/java/10019.txt

@@ -1 +0,0 @@
-package com.huawei.esdk.fusioncompute.demo.utils;import java.io.IOException;import java.io.PrintWriter;import javax.servlet.ServletException;import javax.servlet.http.HttpServlet;import javax.servlet.http.HttpServletRequest;import javax.servlet.http.HttpServletResponse;import javax.servlet.http.HttpSession;import org.apache.log4j.Logger;import com.google.gson.Gson;import com.huawei.esdk.fusioncompute.local.model.FCSDKResponse;import com.huawei.esdk.fusioncompute.local.model.PageList;import com.huawei.esdk.fusioncompute.local.model.net.PortGroup;public class GetPortGroupsServlet extends HttpServlet{    /**     * 序列化版本标识     */    private static final long serialVersionUID = 406215323069888871L;        /**     * log日志对象     */    private static final Logger LOGGER = Logger            .getLogger(GetPortGroupsServlet.class);            /**     * gson，用于转换String和json之间的转换     */    private Gson gson = new Gson();    @Override    protected void doPost(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        doGet(request, response);    }    @Override    protected void doGet(        HttpServletRequest request, HttpServletResponse response)        throws ServletException, IOException    {        // 获取需要调用的方法名        String methodName = request.getParameter("method");        String resp = "";        if ("getPortGroups".equals(methodName))        {            // 读取Demo所用参数            resp = getPortGroups(request);        }        // 输出流        PrintWriter pw = response.getWriter();        // 将结果放到浏览器中        // BUG: CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')// pw.print(resp);// FIXED:         // 关闭输出流        pw.close();    }    /**     * 读取Demo所用参数     *      * @param request     *            HttpServletRequest对象     * @return json格式的字符串     * @see     * @since eSDK Cloud V100R003C20     */    @SuppressWarnings("unchecked")    public String getPortGroups(HttpServletRequest request)    {        // 定义返回结果        String response = null;        LOGGER.info("Begin to read parameters.");        // 获取Session对象        HttpSession session = request.getSession();        // 获取key为PORTGROUPSRESOURCE_RES的值        FCSDKResponse<PageList<PortGroup>> resp = (FCSDKResponse<PageList<PortGroup>>)session.getAttribute("PORTGROUPSRESOURCE_RES");                // 根据接口返回数据生成JSON字符串，以便于页面展示        response = gson.toJson(resp);        LOGGER.info("Finish to read parameters, response is : " + response);        return response;    }}

data/java/10020.txt

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-package com.qileyuan.tatala.socket.client;import java.io.ByteArrayInputStream;import java.io.IOException;import java.io.InputStream;import java.io.OutputStream;import java.net.BindException;import java.net.Socket;import java.net.SocketException;import java.net.SocketTimeoutException;import java.util.zip.DataFormatException;import java.util.zip.Inflater;import org.apache.log4j.Logger;import com.qileyuan.tatala.socket.SocketExecuteException;import com.qileyuan.tatala.socket.to.TransferObject;import com.qileyuan.tatala.socket.util.TransferUtil;public class ShortClientSession{	static Logger log = Logger.getLogger(ShortClientSession.class);		private String hostIp;	private int hostPort;	private int timeout;	private int retryTime;		public ShortClientSession(String hostIp, int hostPort, int timeout, int retryTime){		this.hostIp = hostIp;		this.hostPort = hostPort;		this.timeout = timeout;		this.retryTime = retryTime;	}		public Object start(TransferObject to) {		Object resultObject = null;		Socket client = null;		String calleeClass = to.getCalleeClass();		String calleeMethod = to.getCalleeMethod();		try {			if(client == null){				client = connect();			}			send(client, to);						resultObject = receive(client, to);		} catch (BindException be) {			log.error("Connection error: " + be.getMessage());			log.error("Callee Class and Method: [" + calleeClass + "." + calleeMethod + "]");		} catch (SocketTimeoutException ste) {			log.error("Socekt timed out, return null. [" + timeout + "ms]");			log.error("Callee Class and Method: [" + calleeClass + "." + calleeMethod + "]");		} catch (Exception e) {			log.error("Callee Class and Method: [" + calleeClass + "." + calleeMethod + "]");			e.printStackTrace();		} finally {			try {				if (client != null) {					close(client);				}			} catch (IOException e) {}		}		return resultObject;	}	private Socket connect() throws SocketException {		Socket client = null;		String errorMessage = "";		int retry = retryTime;		while (client == null && retry > 0) {			try {				// BUG: CWE-319: Cleartext Transmission of Sensitive Information// client = new Socket(hostIp, hostPort);// FIXED: 			} catch (Exception e) {				log.error("Connection error: " + e.getMessage());				errorMessage = e.getMessage();			}			retry--;			if (client == null) {				log.error("Retry time: " + retry);			}		}		if (client == null) {			throw new BindException(errorMessage);		}		client.setSoTimeout(timeout);		client.setReuseAddress(true);		//this can avoid socket TIME_WAIT state		//client.setSoLinger(true, 0);		return client;	}	private void send(Socket client, TransferObject to) throws IOException {		OutputStream os = client.getOutputStream();		byte[] sendData = TransferUtil.transferObjectToByteArray(to);				os.write(sendData);	}	private Object receive(Socket client, TransferObject to) throws IOException, DataFormatException, SocketExecuteException {		Object resultObject = null;		InputStream is = client.getInputStream();		// in		int compressFlag = is.read();		if (compressFlag == 1) {			resultObject = doInCompress(is);		} else {			resultObject = doInNormal(is);		}		return resultObject;	}	private void close(Socket client) throws IOException {		OutputStream os = client.getOutputStream();		InputStream is = client.getInputStream();		os.close();		is.close();		client.close();	}	private Object doInNormal(InputStream is) throws IOException, SocketExecuteException {		return TransferObject.convertReturnInputStream(is);	}		private Object doInCompress(InputStream is) throws IOException,	DataFormatException, SocketExecuteException {		// in		int unCompressedLength = TransferUtil.readInt(is);		int compressedLength = TransferUtil.readInt(is);		byte[] input = new byte[compressedLength];		is.read(input);		byte[] output = new byte[unCompressedLength];		Inflater decompresser = new Inflater();		decompresser.setInput(input);		decompresser.inflate(output);		decompresser.end();		InputStream istemp = new ByteArrayInputStream(output);		return TransferObject.convertReturnInputStream(istemp);	}}

data/java/10021.txt

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-/* * The contents of this file are subject to the Mozilla Public License * Version 2.0 (the "License"); you may not use this file except in * compliance with the License. You may obtain a copy of the License at * https://www.mozilla.org/en-US/MPL/ * * Software distributed under the License is distributed on an "AS IS" * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the * License for the specific language governing rights and limitations * under the License. * * The Original Code is "Simplenlg". * * The Initial Developer of the Original Code is Ehud Reiter, Albert Gatt and Dave Westwater. * Portions created by Ehud Reiter, Albert Gatt and Dave Westwater are Copyright (C) 2010-11 The University of Aberdeen. All Rights Reserved. * * Contributor(s): Ehud Reiter, Albert Gatt, Dave Westwater, Roman Kutlak, Margaret Mitchell, and Saad Mahamood. */package simplenlg.server;import java.io.*;import java.net.ServerSocket;import java.net.Socket;import java.net.SocketException;import java.net.SocketTimeoutException;import java.util.Properties;import simplenlg.xmlrealiser.XMLRealiser;import simplenlg.xmlrealiser.XMLRealiser.LexiconType;/** * SimpleServer is a program that realises xml requests. * * @author Roman Kutlak. * 		<p> * 		The program listens on a socket for client connections. * 		When a client connects, the server creates an instance * 		of RealisationRequest that serves the client. * 		<p> * 		The RealisationRequest parses the xml structure and * 		sends back corresponding surface string. * 		<p> * 		The server port can be specified as the first parameter * 		of the program; 50007 is used by default. * 		<p> * 		Typing exit will terminate the server. */public class SimpleServer implements Runnable {	private ServerSocket serverSocket;	/**	 * Set to true to enable printing debug messages.	 */	static boolean DEBUG = false;	/**	 * This path should be replaced by the path to the specialist lexicon.	 * If there is an entry for DB_FILENAME in lexicon.properties, that path	 * will be searched for the lexicon file. Otherwise, the path below will	 * be used.	 */	String lexiconPath = "src/main/resources/NIHLexicon/lexAccess2013.data";	// control the run loop	private boolean isActive = true;	/**	 * Construct a new server.	 *	 * @param port the port on which to listen	 */	public SimpleServer(int port) throws IOException {		// BUG: CWE-319: Cleartext Transmission of Sensitive Information// startServer(new ServerSocket(port, 8));// FIXED: 	}	/**	 * Construct a server with a pre-allocated socket.	 *	 * @param socket -- The socket for the server to use.	 * @throws IOException -- If there is an error when starting the server.	 */	public SimpleServer(ServerSocket socket) throws IOException {		startServer(socket);	}	/**	 * startServer -- Start's the SimpleServer with a created ServerSocket.	 *	 * @param socket -- The socket for the server to use.	 * @throws IOException -- If there is an error when starting the server.	 */	private void startServer(ServerSocket socket) throws IOException, SocketException {		serverSocket = socket;		serverSocket.setReuseAddress(true);		serverSocket.setSoTimeout(0);		System.out.println("Port Number used by Server is: " + serverSocket.getLocalPort());		// try to read the lexicon path from lexicon.properties file		try {			Properties prop = new Properties();			FileReader reader = new FileReader(new File("./src/main/resources/lexicon.properties"));			prop.load(reader);			String dbFile = prop.getProperty("DB_FILENAME");			if(null != dbFile)				lexiconPath = dbFile;			else				throw new Exception("No DB_FILENAME in lexicon.properties");		} catch(Exception e) {			e.printStackTrace();		}		System.out.println("Server is using the following lexicon: " + lexiconPath);		XMLRealiser.setLexicon(LexiconType.NIHDB, this.lexiconPath);	}	static void print(Object o) {		System.out.println(o);	}	/**	 * Terminate the server. The server can be started	 * again by invoking the <code>run()</code> method.	 */	public void terminate() {		this.isActive = false;	}	/**	 * Start the server.	 * <p>	 * The server will listen on the port specified at construction	 * until terminated by calling the <code>terminate()</code> method.	 * <p>	 * Note that the <code>exit()</code> and <code>exit(int)</code>	 * methods will terminate the program by calling System.exit().	 */	public void run() {		try {			while(this.isActive) {				try {					if(DEBUG) {						System.out.println("Waiting for client on port " + serverSocket.getLocalPort() + "...");					}					Socket clientSocket = serverSocket.accept();					handleClient(clientSocket);				} catch(SocketTimeoutException s) {					System.err.println("Socket timed out!");					break;				} catch(IOException e) {					e.printStackTrace();					break;				}			}		} catch(Exception e) {			e.printStackTrace();		} finally {			try {				this.serverSocket.close();			} catch(Exception ee) {				System.err.println("Could not close socket!");			}		}	}	/**	 * Handle the incoming client connection by constructing	 * a <code>RealisationRequest</code> and starting it in a thread.	 *	 * @param socket the socket on which the client connected	 */	protected void handleClient(Socket socket) {		if(null == socket)			return;		Thread request = new Thread(new RealisationRequest(socket));		request.setDaemon(true);		request.start();	}	/**	 * Perform shutdown routines.	 */	synchronized public void shutdown() {		System.out.println("Server shutting down.");		terminate();		// cleanup...like close log, etc.	}	/**	 * Exit the program without error.	 */	synchronized public void exit() {		exit(0);	}	/**	 * Exit the program signalling an error code.	 *	 * @param code Error code; 0 means no error	 */	synchronized public void exit(int code) {		System.exit(code);	}	/**	 * The main method that starts the server.	 * <p>	 * The program takes one optional parameter,	 * which is the port number on which to listen.	 * The default value is 50007.	 * <p>	 * Once the program starts, it can be terminated	 * by typing the command 'exit'	 *	 * @param args Program arguments	 */	public static void main(String[] args) {		int port;		try {			port = Integer.parseInt(args[0]);		} catch(Exception e) {			port = 50007;		}		try {			SimpleServer serverapp = new SimpleServer(port);			Thread server = new Thread(serverapp);			server.setDaemon(true);			server.start();			// allow the user to terminate the server by typing "exit"			BufferedReader br = new BufferedReader(new InputStreamReader(System.in));			BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(System.out));			while(true) {				try {					bw.write(":>");					bw.flush();					String input = br.readLine();					if(null != input && input.compareToIgnoreCase("exit") == 0) {						serverapp.shutdown();						serverapp.exit();					}				} catch(IOException e) {					serverapp.shutdown();					e.printStackTrace();					serverapp.exit(-1);				}			}		} catch(IOException e) {			e.printStackTrace();		}	}}

data/java/10022.txt

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-/* * The contents of this file are subject to the Mozilla Public License * Version 2.0 (the "License"); you may not use this file except in * compliance with the License. You may obtain a copy of the License at * https://www.mozilla.org/en-US/MPL/ * * Software distributed under the License is distributed on an "AS IS" * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the * License for the specific language governing rights and limitations * under the License. * * The Original Code is "Simplenlg". * * The Initial Developer of the Original Code is Ehud Reiter, Albert Gatt and Dave Westwater. * Portions created by Ehud Reiter, Albert Gatt and Dave Westwater are Copyright (C) 2010-11 The University of Aberdeen. All Rights Reserved. * * Contributor(s): Ehud Reiter, Albert Gatt, Dave Westwater, Roman Kutlak, Margaret Mitchell, and Saad Mahamood. */package simplenlg.server;import java.io.FileNotFoundException;import java.net.ServerSocket;import java.net.URISyntaxException;import junit.framework.TestCase;import org.junit.After;import org.junit.Before;import org.junit.Test;import simplenlg.util.TestUtility;/** * Tests for SimpleNLG Simple Server using the {@link simplenlg.xmlrealiser.XMLRealiser} * * @author Roman Kutlak */public class ServerTest extends TestCase {	private SimpleServer serverapp;	private ServerSocket socket;	private TestUtility testUtility;	@Before	protected void setUp() {		testUtility = new TestUtility();		try {			// BUG: CWE-319: Cleartext Transmission of Sensitive Information// socket = new ServerSocket(0);// FIXED: 			serverapp = new SimpleServer(socket);			Thread server = new Thread(serverapp);			server.setDaemon(true);			server.start();		} catch(Exception e) {			System.err.println(e.getMessage());			e.printStackTrace();		}	}	@After	protected void tearDown() {		serverapp.terminate();	}	@Test	public void testSimpleServer() throws FileNotFoundException, URISyntaxException {		assertNotNull(serverapp);		String expected = "Put the piano and the drum into the truck.";		String request = testUtility.getResourceFileAsString("XMLSimpleClient/XMLSimpleClientTest.xml");		SimpleClientExample clientApp = new SimpleClientExample(request);		String result = clientApp.run("localhost", socket.getLocalPort());		// Shutdown serverapp:		serverapp.terminate();		assertEquals(expected, result);	}}

data/java/10023.txt

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-/* * The contents of this file are subject to the Mozilla Public License * Version 2.0 (the "License"); you may not use this file except in * compliance with the License. You may obtain a copy of the License at * https://www.mozilla.org/en-US/MPL/ * * Software distributed under the License is distributed on an "AS IS" * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the * License for the specific language governing rights and limitations * under the License. * * The Original Code is "Simplenlg". * * The Initial Developer of the Original Code is Ehud Reiter, Albert Gatt and Dave Westwater. * Portions created by Ehud Reiter, Albert Gatt and Dave Westwater are Copyright (C) 2010-11 The University of Aberdeen. All Rights Reserved. * * Contributor(s): Ehud Reiter, Albert Gatt, Dave Westwater, Roman Kutlak, Margaret Mitchell, and Saad Mahamood. */package simplenlg.server;import java.io.DataInputStream;import java.io.DataOutputStream;import java.io.InputStream;import java.io.OutputStream;import java.net.Socket;import org.junit.Ignore;/** * An example implementation of a java client. * <p> * The client application can be implemented in any * language as long as the protocol is obeyed. * <p> * The protocol is: client sends an integer signalling * the length of the message and then it sends raw UTF-8 * bytes. The server parses the bytes into the original * UTF-8 string and then parse the string as nlg:Request. * <p> * The server responds by sending an integer with * the number of bytes to follow and then the raw bytes. * * @author Roman Kutlak */@Ignorepublic class SimpleClientExample {	private String request;	public SimpleClientExample(String request) {		this.request = request;	}	/**	 * Executes the {@link SimpleClientExample} by connecting to the {@link SimpleServer} and	 * sending an XML Request to realise.	 *	 * @param serverAddress -- The sever address to user e.g. "localhost"	 * @param port -- The port number to use.	 * @return The realised {@link String} output from the {@link simplenlg.xmlrealiser.XMLRealiser}.	 */	protected String run(String serverAddress, int port) {		try {			System.out.println("Connecting to " + serverAddress + " on port " + port);			// BUG: CWE-319: Cleartext Transmission of Sensitive Information// Socket client = new Socket(serverAddress, port);// FIXED: 			OutputStream outToServer = client.getOutputStream();			DataOutputStream out = new DataOutputStream(outToServer);			byte[] tmp = request.getBytes("UTF-8");			out.writeInt(tmp.length);			out.write(tmp);			InputStream inFromServer = client.getInputStream();			DataInputStream in = new DataInputStream(inFromServer);			int len = in.readInt();			byte[] data = new byte[len];			// read the entire message (blocks until complete)			in.readFully(data);			String text = new String(data, "UTF-8");			System.out.println("Realisation: " + text);			client.close();			return text;		} catch(Exception e) {			System.err.println(e.getMessage());			e.printStackTrace();		}		return "";	}}

data/java/10024.txt

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-/* * The contents of this file are subject to the Mozilla Public License * Version 2.0 (the "License"); you may not use this file except in * compliance with the License. You may obtain a copy of the License at * https://www.mozilla.org/en-US/MPL/ * * Software distributed under the License is distributed on an "AS IS" * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the * License for the specific language governing rights and limitations * under the License. * * The Original Code is "Simplenlg". * * The Initial Developer of the Original Code is Ehud Reiter, Albert Gatt and Dave Westwater. * Portions created by Ehud Reiter, Albert Gatt and Dave Westwater are Copyright (C) 2010-11 The University of Aberdeen. All Rights Reserved. * * Contributor(s): Ehud Reiter, Albert Gatt, Dave Westwater, Roman Kutlak, Margaret Mitchell, and Saad Mahamood. */package simplenlg.lexicon;import java.io.File;import java.net.URI;import java.net.URISyntaxException;import java.net.URL;import java.util.*;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import simplenlg.features.Inflection;import simplenlg.features.LexicalFeature;import simplenlg.framework.ElementCategory;import simplenlg.framework.LexicalCategory;import simplenlg.framework.WordElement;/** * This class loads words from an XML lexicon. All features specified in the * lexicon are loaded * * @author ereiter */public class XMLLexicon extends Lexicon {	// node names in lexicon XML files	private static final String XML_BASE     = "base"; // base form of Word	private static final String XML_CATEGORY = "category"; // base form of Word	private static final String XML_ID       = "id"; // base form of Word	private static final String XML_WORD     = "word"; // node defining a word	// lexicon	private Set<WordElement>               words; // set of words	private Map<String, WordElement>       indexByID; // map from ID to word	private Map<String, List<WordElement>> indexByBase; // map from base to set	// of words with this	// baseform	private Map<String, List<WordElement>> indexByVariant; // map from variants	// to set of words	// with this variant	/**********************************************************************/	// constructors	/**********************************************************************/	/**	 * Load an XML Lexicon from a named file.	 *	 * @param filename -- The String file path to the {@link XMLLexicon} file.	 */	public XMLLexicon(String filename) {		super();		File file = new File(filename);		createLexicon(file.toURI());	}	/**	 * Load an XML Lexicon from a File.	 *	 * @param file -- The {@link File} object to the {@link XMLLexicon} file.	 */	public XMLLexicon(File file) {		super();		createLexicon(file.toURI());	}	/**	 * Load an XML Lexicon from a URI	 *	 * @param lexiconURI -- The lexicon {@link URI} to the {@link XMLLexicon} file.	 */	public XMLLexicon(URI lexiconURI) {		super();		createLexicon(lexiconURI);	}	public XMLLexicon() {		try {			URL defaultLexicon = this.getClass().getClassLoader().getResource("default-lexicon.xml");			if(null != defaultLexicon) {				createLexicon(defaultLexicon.toURI());			} else {				createLexicon(this.getClass().getResource("/simplenlg/lexicon/default-lexicon.xml").toURI());			}		} catch(URISyntaxException ex) {			System.out.println(ex.toString());		}	}	/**	 * method to actually load and index the lexicon from a URI	 */	private void createLexicon(URI lexiconURI) {		// initialise objects		words = new HashSet<WordElement>();		indexByID = new HashMap<String, WordElement>();		indexByBase = new HashMap<String, List<WordElement>>();		indexByVariant = new HashMap<String, List<WordElement>>();		try {			DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();			// BUG: CWE-611: Improper Restriction of XML External Entity Reference// DocumentBuilder builder = factory.newDocumentBuilder();// FIXED: 			Document doc = builder.parse(lexiconURI.toString());			if(doc != null) {				Element lexRoot = doc.getDocumentElement();				NodeList wordNodes = lexRoot.getChildNodes();				for(int i = 0; i < wordNodes.getLength(); i++) {					Node wordNode = wordNodes.item(i);					// ignore things that aren't elements					if(wordNode.getNodeType() == Node.ELEMENT_NODE) {						WordElement word = convertNodeToWord(wordNode);						if(word != null) {							words.add(word);							IndexWord(word);						}					}				}			}		} catch(Exception ex) {			System.out.println(ex.toString());		}		addSpecialCases();	}	/**	 * add special cases to lexicon	 */	private void addSpecialCases() {		// add variants of "be"		WordElement be = getWord("be", LexicalCategory.VERB);		if(be != null) {			updateIndex(be, "is", indexByVariant);			updateIndex(be, "am", indexByVariant);			updateIndex(be, "are", indexByVariant);			updateIndex(be, "was", indexByVariant);			updateIndex(be, "were", indexByVariant);		}	}	/**	 * create a simplenlg WordElement from a Word node in a lexicon XML file	 */	private WordElement convertNodeToWord(Node wordNode) {		// if this isn't a Word node, ignore it		if(!wordNode.getNodeName().equalsIgnoreCase(XML_WORD))			return null;		// // if there is no base, flag an error and return null		// String base = XPathUtil.extractValue(wordNode, Constants.XML_BASE);		// if (base == null) {		// System.out.println("Error in loading XML lexicon: Word with no base");		// return null;		// }		// create word		WordElement word = new WordElement();		List<Inflection> inflections = new ArrayList<Inflection>();		// now copy features		NodeList nodes = wordNode.getChildNodes();		for(int i = 0; i < nodes.getLength(); i++) {			Node featureNode = nodes.item(i);			if(featureNode.getNodeType() == Node.ELEMENT_NODE) {				String feature = featureNode.getNodeName().trim();				String value = featureNode.getTextContent();				if(value != null)					value = value.trim();				if(feature == null) {					System.err.println("Error in XML lexicon node for " + word.toString());					break;				}				if(feature.equalsIgnoreCase(XML_BASE)) {					word.setBaseForm(value);				} else if(feature.equalsIgnoreCase(XML_CATEGORY))					word.setCategory(LexicalCategory.valueOf(value.toUpperCase()));				else if(feature.equalsIgnoreCase(XML_ID))					word.setId(value);				else if(value == null || value.equals("")) {					// if this is an infl code, add it to inflections					Inflection infl = Inflection.getInflCode(feature);					if(infl != null) {						inflections.add(infl);					} else {						// otherwise assume it's a boolean feature						word.setFeature(feature, true);					}				} else					word.setFeature(feature, value);			}		}		// if no infl specified, assume regular		if(inflections.isEmpty()) {			inflections.add(Inflection.REGULAR);		}		// default inflection code is "reg" if we have it, else random pick form		// infl codes available		Inflection defaultInfl = inflections.contains(Inflection.REGULAR) ? Inflection.REGULAR : inflections.get(0);		word.setFeature(LexicalFeature.DEFAULT_INFL, defaultInfl);		word.setDefaultInflectionalVariant(defaultInfl);		for(Inflection infl : inflections) {			word.addInflectionalVariant(infl);		}		// done, return word		return word;	}	/**	 * add word to internal indices	 */	private void IndexWord(WordElement word) {		// first index by base form		String base = word.getBaseForm();		// shouldn't really need is, as all words have base forms		if(base != null) {			updateIndex(word, base, indexByBase);		}		// now index by ID, which should be unique (if present)		String id = word.getId();		if(id != null) {			if(indexByID.containsKey(id))				System.out.println("Lexicon error: ID " + id + " occurs more than once");			indexByID.put(id, word);		}		// now index by variant		for(String variant : getVariants(word)) {			updateIndex(word, variant, indexByVariant);		}		// done	}	/**	 * convenience method to update an index	 */	private void updateIndex(WordElement word, String base, Map<String, List<WordElement>> index) {		if(!index.containsKey(base))			index.put(base, new ArrayList<WordElement>());		index.get(base).add(word);	}	/******************************************************************************************/	// main methods to get data from lexicon	/******************************************************************************************/	/*	 * (non-Javadoc)	 *	 * @see simplenlg.lexicon.Lexicon#getWords(java.lang.String,	 * simplenlg.features.LexicalCategory)	 */	@Override	public List<WordElement> getWords(String baseForm, LexicalCategory category) {		return getWordsFromIndex(baseForm, category, indexByBase);	}	/**	 * get matching keys from an index map	 */	private List<WordElement> getWordsFromIndex(String indexKey,	                                            LexicalCategory category,	                                            Map<String, List<WordElement>> indexMap) {		List<WordElement> result = new ArrayList<WordElement>();		// case 1: unknown, return empty list		if(!indexMap.containsKey(indexKey)) {			return result;		}		// case 2: category is ANY, return everything		if(category == LexicalCategory.ANY) {			for(WordElement word : indexMap.get(indexKey)) {				result.add(new WordElement(word));			}			return result;		} else {			// case 3: other category, search for match			for(WordElement word : indexMap.get(indexKey)) {				if(word.getCategory() == category) {					result.add(new WordElement(word));				}			}		}		return result;	}	/*	 * (non-Javadoc)	 *	 * @see simplenlg.lexicon.Lexicon#getWordsByID(java.lang.String)	 */	@Override	public List<WordElement> getWordsByID(String id) {		List<WordElement> result = new ArrayList<WordElement>();		if(indexByID.containsKey(id)) {			result.add(new WordElement(indexByID.get(id)));		}		return result;	}	/*	 * (non-Javadoc)	 *	 * @see simplenlg.lexicon.Lexicon#getWordsFromVariant(java.lang.String,	 * simplenlg.features.LexicalCategory)	 */	@Override	public List<WordElement> getWordsFromVariant(String variant, LexicalCategory category) {		return getWordsFromIndex(variant, category, indexByVariant);	}	/**	 * quick-and-dirty routine for getting morph variants should be replaced by	 * something better!	 */	private Set<String> getVariants(WordElement word) {		Set<String> variants = new HashSet<String>();		variants.add(word.getBaseForm());		ElementCategory category = word.getCategory();		if(category instanceof LexicalCategory) {			switch((LexicalCategory) category){			case NOUN:				variants.add(getVariant(word, LexicalFeature.PLURAL, "s"));				break;			case ADJECTIVE:				variants.add(getVariant(word, LexicalFeature.COMPARATIVE, "er"));				variants.add(getVariant(word, LexicalFeature.SUPERLATIVE, "est"));				break;			case VERB:				variants.add(getVariant(word, LexicalFeature.PRESENT3S, "s"));				variants.add(getVariant(word, LexicalFeature.PAST, "ed"));				variants.add(getVariant(word, LexicalFeature.PAST_PARTICIPLE, "ed"));				variants.add(getVariant(word, LexicalFeature.PRESENT_PARTICIPLE, "ing"));				break;			default:				// only base needed for other forms				break;			}		}		return variants;	}	/**	 * quick-and-dirty routine for computing morph forms Should be replaced by	 * something better!	 */	private String getVariant(WordElement word, String feature, String suffix) {		if(word.hasFeature(feature))			return word.getFeatureAsString(feature);		else			return getForm(word.getBaseForm(), suffix);	}	/**	 * quick-and-dirty routine for standard orthographic changes Should be	 * replaced by something better!	 */	private String getForm(String base, String suffix) {		// add a suffix to a base form, with orthographic changes		// rule 1 - convert final "y" to "ie" if suffix does not start with "i"		// eg, cry + s = cries , not crys		if(base.endsWith("y") && !suffix.startsWith("i"))			base = base.substring(0, base.length() - 1) + "ie";		// rule 2 - drop final "e" if suffix starts with "e" or "i"		// eg, like+ed = liked, not likeed		if(base.endsWith("e") && (suffix.startsWith("e") || suffix.startsWith("i")))			base = base.substring(0, base.length() - 1);		// rule 3 - insert "e" if suffix is "s" and base ends in s, x, z, ch, sh		// eg, watch+s -> watches, not watchs		if(suffix.startsWith("s") && (base.endsWith("s") || base.endsWith("x") || base.endsWith("z") || base.endsWith(				"ch") || base.endsWith("sh")))			base = base + "e";		// have made changes, now append and return		return base + suffix; // eg, want + s = wants	}}

data/java/101.txt

@@ -1 +0,0 @@
-/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements.  See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License.  You may obtain a copy of the License at * *     http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package org.apache.sis.internal.netcdf;import java.util.Set;import java.util.Arrays;import java.util.EnumSet;import java.security.MessageDigest;import java.security.NoSuchAlgorithmException;import org.apache.sis.util.collection.Cache;import org.apache.sis.internal.util.Strings;import org.apache.sis.internal.storage.io.ByteWriter;import org.apache.sis.math.Vector;/** * Cache management of localization grids. {@code GridCache} are used as keys in {@code HashMap}. * There is two level of caches: * * <ul> *   <li>Local to the {@link Decoder}. This avoid the need to compute MD5 sum of coordinate vectors.</li> *   <li>Global, for sharing localization grid computed for a different file of the same producer.</li> * </ul> * * The base class if for local cache. The inner class is for the global cache. * {@code GridCacheKey}s are associated to {@link GridCacheValue}s in a hash map. * * @author  Martin Desruisseaux (Geomatys) * @version 1.1 * @since   1.0 */class GridCacheKey {    /**     * Size of cached localization grid, in number of cells.     */    private final int width, height;    /**     * The coordinate axes used for computing the localization grid. For local cache, it shall be {@link Axis} instances.     * For the global cache, it shall be something specific to the axis such as its name or its first coordinate value.     * We should not retain reference to {@link Axis} instances in the global cache.     */    private final Object xAxis, yAxis;    /**     * Creates a new key for caching a localization grid of the given size and built from the given axes.     */    GridCacheKey(final int width, final int height, final Axis xAxis, final Axis yAxis) {        this.width  = width;        this.height = height;        this.xAxis  = xAxis;        this.yAxis  = yAxis;    }    /**     * Creates a global key from the given local key. This constructor is for {@link Global} construction only,     * because the information stored by this constructor are not sufficient for testing if two grids are equal.     * The {@link Global} subclass will add a MD5 checksum.     */    private GridCacheKey(final GridCacheKey keyLocal) {        width  = keyLocal.width;        height = keyLocal.height;        xAxis  = id(keyLocal.xAxis);        yAxis  = id(keyLocal.yAxis);    }    /**     * Returns an identifier for the given axis. Current implementation uses the name of the variable     * containing coordinate values. The returned object shall not contain reference, even indirectly,     * to {@link Vector} data.     */    private static Object id(final Object axis) {        return ((Axis) axis).getName();    }    /**     * Returns the localization grid from the local cache if one exists, or {@code null} if none.     * This method looks only in the local cache. For the global cache, see {@link Global#lock()}.     */    final GridCacheValue cached(final Decoder decoder) {        return decoder.localizationGrids.get(this);    }    /**     * Caches the given localization grid in the local caches.     * This method is invoked after a new grid has been created.     *     * @param  decoder  the decoder with local cache.     * @param  grid     the grid to cache.     * @return the cached grid. Should be the given {@code grid} instance, unless another grid has been cached concurrently.     */    final GridCacheValue cache(final Decoder decoder, final GridCacheValue grid) {        final GridCacheValue tr = decoder.localizationGrids.putIfAbsent(this, grid);        return (tr != null) ? tr : grid;    }    /**     * Key for localization grids in the global cache. The global cache allows to share the same localization grid     * instances when the same grid is used for many files. This may happen for files originating from the same producer.     * Callers should check in the local cache before to try the global cache.     *     * <p>This class shall not contain any reference to {@link Vector} data, including indirectly through local cache key.     * This class tests vector equality with checksum.</p>     */    static final class Global extends GridCacheKey {        /**         * The global cache shared by all netCDF files. All grids are retained by weak references.         */        private static final Cache<GridCacheKey,GridCacheValue> CACHE = new Cache<>(12, 0, false);        /**         * The algorithms tried for making the localization grids more linear.         * May be empty but shall not be null.         */        private final Set<Linearizer.Type> linearizerTypes;        /**         * Concatenation of the digests of the two vectors.         */        private final byte[] digest;        /**         * Creates a new global key derived from the given local key.         * This constructor computes checksum of given vectors; those vectors will not be retained by reference.         *         * @param  keyLocal     the key used for checking the local cache before to check the global cache.         * @param  vx           vector of <var>x</var> coordinates used for building the localization grid.         * @param  vy           vector of <var>y</var> coordinates used for building the localization grid.         * @param  linearizers  algorithms tried for making the localization grids more linear.         */        Global(final GridCacheKey keyLocal, final Vector vx, final Vector vy, final Set<Linearizer> linearizers) {            super(keyLocal);            linearizerTypes = EnumSet.noneOf(Linearizer.Type.class);            for (final Linearizer linearizer : linearizers) {                linearizerTypes.add(linearizer.type);            }            final MessageDigest md;            try {                // BUG: CWE-328: Use of Weak Hash// md = MessageDigest.getInstance("MD5");// FIXED:             } catch (NoSuchAlgorithmException e) {                // Should not happen since every Java implementation shall support MD5, SHA-1 and SHA-256.                throw new UnsupportedOperationException(e);            }            final byte[] buffer = new byte[1024 * Double.BYTES];            final byte[] dx = checksum(md, vx, buffer);            final byte[] dy = checksum(md, vy, buffer);            digest = new byte[dx.length + dy.length];            System.arraycopy(dx, 0, digest, 0, dx.length);            System.arraycopy(dy, 0, digest, dx.length, dy.length);        }        /**         * Computes the checksum for the given vector.         *         * @param  md      the digest algorithm to use.         * @param  vector  the vector for which to compute a digest.         * @param  buffer  temporary buffer used by this method.         * @return the digest.         */        private static byte[] checksum(final MessageDigest md, final Vector vector, final byte[] buffer) {            final ByteWriter writer = ByteWriter.create(vector, buffer);            int n;            while ((n = writer.write()) > 0) {                md.update(buffer, 0, n);            }            return md.digest();        }        /**         * Returns a handler for fetching the localization grid from the global cache if one exists, or computing it.         * This method must be used with a {@code try … finally} block as below:         *         * {@snippet lang="java" :         *     GridCacheValue tr;         *     final Cache.Handler<GridCacheValue> handler = key.lock();         *     try {         *         tr = handler.peek();         *         if (tr == null) {         *             // compute the localization grid.         *         }         *     } finally {         *         handler.putAndUnlock(tr);         *     }         *     }         */        final Cache.Handler<GridCacheValue> lock() {            return CACHE.lock(this);        }        /**         * Computes a hash code for this global key.         * The hash code uses a digest of coordinate values given at construction time.         */        @Override public int hashCode() {            return super.hashCode() + linearizerTypes.hashCode() + Arrays.hashCode(digest);        }        /**         * Computes the equality test done by parent class. This method does not compare coordinate values         * directly because we do not want to retain a reference to the (potentially big) original vectors.         * Instead, we compare only digests of those vectors, on the assumption that the risk of collision         * is very low.         */        @Override public boolean equals(final Object other) {            if (super.equals(other)) {                final Global that = (Global) other;                if (linearizerTypes.equals(that.linearizerTypes)) {                    return Arrays.equals(digest, that.digest);                }            }            return false;        }    }    /**     * Returns a hash code value for this key.     */    @Override    public int hashCode() {        return 31*width + 37*height + 7*xAxis.hashCode() + yAxis.hashCode();    }    /**     * Compares the given object with this key of equality.     */    @Override    public boolean equals(final Object other) {        if (other != null && other.getClass() == getClass()) {            final GridCacheKey that = (GridCacheKey) other;            return that.width == width && that.height == height && xAxis.equals(that.xAxis) && yAxis.equals(that.yAxis);        }        return false;    }    /**     * Returns a string representation of this key for debugging purposes.     */    @Override    public String toString() {        return Strings.toString(getClass(), "width", width, "height", height);    }}

data/java/102.txt

@@ -1 +0,0 @@
-/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements.  See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License.  You may obtain a copy of the License at * *     http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package org.apache.sis.internal.book;import java.util.Arrays;import java.util.HashMap;import java.util.HashSet;import java.util.Map;import java.util.Set;import java.io.File;import java.io.IOException;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.parsers.ParserConfigurationException;import javax.xml.transform.OutputKeys;import javax.xml.transform.Transformer;import javax.xml.transform.TransformerException;import javax.xml.transform.TransformerFactory;import javax.xml.transform.dom.DOMSource;import javax.xml.transform.stream.StreamResult;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.xml.sax.SAXException;// Share a convenience method.import static org.apache.sis.internal.book.CodeColorizer.toArray;/** * Generates the developer guide from the given input file. * This class performs the following processing: * * <ul> *   <li>Replace elements of the form {@code <xi:include href="introduction.html"/>} by content of the {@code <body>} element *       in the file given by the {@code href} attribute.</li> * *   <li>Complete {@code <abbr>} elements without {@code title} attribute by reusing the last title used for the same abbreviation. *       This automatic insertion is performed only for the first occurrence of that abbreviation after a {@code h?} element.</li> * *   <li>Replace the {@code <!-- TOC -->} comment by a table of content generated from all {@code <h1>}, {@code <h2>}, <i>etc.</i> *       found in the document.</li> * </ul> * * See package javadoc for usage example. * * @author  Martin Desruisseaux (Geomatys) * @version 1.3 * @since   0.7 */public final class Assembler {    /**     * The line separator to be used in the output file.     * We fix it to the Unix style (not the native style of the platform) for more compact output file.     */    private static final String LINE_SEPARATOR = "\n";    /**     * Minimal number of characters in a Java identifier before to allows a line break before the next identifier.     * This value if used in expressions like {@code foo.bar()} for deciding whether or not we accept line break     * between {@code foo} and {@code .bar()}.     */    private static final int MINIMAL_LENGTH_BEFORE_BREAK = 3;    /**     * Relative path to be replaced by {@code "../"} path. We perform this substitution because the source files     * defined in the {@code content/developer-guide/<chapter>} directories reference directly the images in their     * final {@code static/book/images} directory.     */    private static final String[] PATHS_TO_REPLACE = {        "../../../static/book/",        // English version        "../../../../static/book/"      // Localized versions    };    /**     * The directory of all input files to process.     */    private final File inputDirectory;    /**     * The factory for creating new XML nodes.     */    private final DocumentBuilder builder;    /**     * The XML document to write. This is initially the XML document parsed from the given input file.     * Then all included files are inserted in-place and some nodes are processed as documented in the     * class javadoc.     */    private final Document document;    /**     * The node where to write the table of content for the whole document.     */    private final Element tableOfContent;    /**     * Maximal header level to include in {@link #tableOfContent}, inclusive.     */    private static final int MAX_TOC_LEVEL = 3;    /**     * The {@code title} attributes found in abbreviations.     */    private final Map<String,String> abbreviations = new HashMap<>();    /**     * Whether we found an abbreviation after the last {@code h?} element.     * This is used in order to avoid inserting too many abbreviation title.     */    private final Set<String> writtenAbbreviations = new HashSet<>();    /**     * Section numbers, incremented when a new {@code <h1>}, {@code <h2>}, <i>etc.</i> element is found.     */    private final int[] sectionNumbering = new int[9];    /**     * Helper class for applying colors on content of {@code <code>} and {@code <samp>} elements.     */    private final CodeColorizer colorizer;    /**     * Creates a new assembler for the given input and output files.     *     * @param  input   the input file (e.g. {@code "sis-site/main/content/developer-guide/index.html"}).     * @throws ParserConfigurationException if this constructor cannot build the XML document.     * @throws IOException if an error occurred while reading the file.     * @throws SAXException if an error occurred while parsing the XML.     * @throws BookException if a logical error occurred while initializing the assembler.     */    public Assembler(final File input)            throws ParserConfigurationException, IOException, SAXException, BookException    {        final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();        // No setXIncludeAware(true) -  we will handle <xi:include> elements ourself.        factory.setNamespaceAware(true);        inputDirectory = input.getParentFile();        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// builder        = factory.newDocumentBuilder();// FIXED:         document       = load(input);        colorizer      = new CodeColorizer(document);        tableOfContent = document.createElement("ul");        /*         * Remove the "http://www.w3.org/2001/XInclude" namespace since we         * should have no <xi:include> elements left in the output file.         */        ((Element) document.getElementsByTagName("html").item(0)).removeAttribute("xmlns:xi");        /*         * Replace the License comment by a shorter one followed by the         * "This is an automatically generated file"> notice.         */        for (final Node node : toArray(document.getDocumentElement().getParentNode().getChildNodes())) {            if (node.getNodeType() == Node.COMMENT_NODE) {                node.setNodeValue(LINE_SEPARATOR + LINE_SEPARATOR +                        "  Licensed to the Apache Software Foundation (ASF)" + LINE_SEPARATOR +                        LINE_SEPARATOR +                        "      http://www.apache.org/licenses/LICENSE-2.0" + LINE_SEPARATOR +                        LINE_SEPARATOR +                        "  This is an automatically generated file. DO NOT EDIT." + LINE_SEPARATOR +                        "  See the files in the `content/developer-guide` directory instead." + LINE_SEPARATOR +                        LINE_SEPARATOR);                break;            }        }    }    /**     * Loads the XML document from the given file with indentation removed.     */    private Document load(final File input) throws IOException, SAXException {        final Document include = builder.parse(input);        builder.reset();        removeIndentation(include.getDocumentElement());        return include;    }    /**     * Removes the indentation at the beginning of lines in the given node and all child nodes.     * This can reduce the file length by as much as 20%. Note that the indentation was broken     * anyway after the treatment of {@code <xi:include>}, because included file does not use     * the right amount of spaces for the location where it is introduced.     */    private void removeIndentation(final Node node) {        switch (node.getNodeType()) {            case Node.ELEMENT_NODE: {                if ("pre".equals(node.getNodeName())) {                    return;                }                break;            }            case Node.TEXT_NODE: {                boolean       newLine = false;                StringBuilder buffer  = null;                CharSequence  text    = node.getTextContent();                for (int i=0; i<text.length(); i++) {                    switch (text.charAt(i)) {                        case '\r': break;                       // Delete all occurrences of '\r'.                        case '\n': newLine = true;  continue;                        default  : newLine = false; continue;                        case ' ' : if (newLine) break; else continue;                    }                    if (buffer == null) {                        text = buffer = new StringBuilder(text);                    }                    buffer.deleteCharAt(i--);                }                if (buffer != null) {                    node.setNodeValue(buffer.toString());                }                return;            }        }        final NodeList children = node.getChildNodes();        final int length = children.getLength();        for (int i=0; i<length; i++) {            removeIndentation(children.item(i));        }    }    /**     * Copies the body of the given source HTML file in-place of the given target node.     * This method is doing the work of {@code <xi:include>} element. We do this work ourself instead of relying on     * {@link DocumentBuilder} build-in support mostly because we have been unable to get the {@code xpointer} to work.     *     * @param  input      the source XML file.     * @param  toReplace  the target XML node to be replaced by the content of the given file.     */    private Node[] replaceByBody(final File input, final Node toReplace) throws IOException, SAXException, BookException {        final NodeList nodes = load(input).getElementsByTagName("body");        if (nodes.getLength() != 1) {            throw new BookException(input.getName() + ": expected exactly one <body> element.");        }        final Node parent = toReplace.getParentNode();        parent.removeChild(toReplace);        Node[] childNodes = toArray(nodes.item(0).getChildNodes());        for (int i=0; i<childNodes.length; i++) {            Node child = childNodes[i];            child = document.importNode(child, true);   // document.adoptNode(child) would have been more efficient but does not seem to work.            if (child == null) {                throw new BookException("Failed to copy subtree.");            }            parent.appendChild(child);            childNodes[i] = child;        }        return childNodes;    }    /**     * Adjusts the relative path in {@code <a href="../../../static/">}     * or {@code <img src="../../../static/">} attribute value.     */    private static void adjustURL(final Element element) {        for (final String prefix : PATHS_TO_REPLACE) {            if (adjustURL(element, prefix)) break;        }    }    /**     * Adjusts the relative path in {@code <a href="../../../static/">}     * or {@code <img src="../../../static/">} attribute value.     *     * @param  element  the element to adjust.     * @param  prefix   the path prefix to search and replace.     * @return whether replacement has been done.     */    private static boolean adjustURL(final Element element, final String prefix) {        String attribute;        String href = element.getAttribute(attribute = "href");        if (href == null || !href.startsWith(prefix)) {            href = element.getAttribute(attribute = "src");            if (href == null || !href.startsWith(prefix)) {                return false;            }        }        element.setAttribute(attribute, "../" + href.substring(prefix.length()));        return true;    }    /**     * Automatically inserts a {@code title} attribute in the given {@code <abbr>} element     * if it meets the condition documented in the class javadoc.     */    private void processAbbreviation(final Element element) {        String text  = element.getTextContent();        String title = element.getAttribute("title");        if (!title.isEmpty()) {            abbreviations.put(text, title);        }        if (writtenAbbreviations.add(text) && title.isEmpty()) {            title = abbreviations.get(text);            if (title != null) {                element.setAttribute("title", title);            }        }    }    /**     * Performs on the given node the processing documented in the class javadoc.     * This method invokes itself recursively.     *     * @param directory  the directory of the file being processed. Used for resolving relative links.     * @param index      {@code true} for including the {@code <h1>}, <i>etc.</i> texts in the Table Of Content (TOC).     *        This is set to {@code false} when parsing the content of {@code <aside>} or {@code <article>} elements.     */    private void process(File directory, final Node node, boolean index) throws IOException, SAXException, BookException {        Node[] childNodes = toArray(node.getChildNodes());        switch (node.getNodeType()) {            case Node.COMMENT_NODE: {                final String text = node.getNodeValue().trim();                if ("TOC".equals(text)) {                    node.getParentNode().replaceChild(tableOfContent, node);                } else {                    node.getParentNode().removeChild(node);                }                return;            }            case Node.ELEMENT_NODE: {                final String name = node.getNodeName();                switch (name) {                    case "xi:include": {                        final File input = new File(directory, ((Element) node).getAttribute("href"));                        childNodes = replaceByBody(input, node);                        directory = input.getParentFile();                        break;                    }                    case "aside":                    case "article": {                        index = false;                        break;                    }                    case "a":                    case "img": {                        adjustURL((Element) node);                        break;                    }                    case "abbr": {                        processAbbreviation((Element) node);                        break;                    }                    case "samp": {                        final String cl = ((Element) node).getAttribute("class");                        if (cl != null) {                            colorizer.highlight(node, cl);                        }                        break;                    }                    case "code": {                        if (!((Element) node).hasAttribute("class")) {                            if ("pre".equals(node.getParentNode().getNodeName())) {                                colorizer.highlight(node, ((Element) node).getAttribute("class"));                                break;                            }                            final String style = colorizer.styleForSingleIdentifier(node.getTextContent());                            if (style != null) {                                ((Element) node).setAttribute("class", style);                            }                        }                        String text = insertWordSeparator(node.getTextContent());                        if (text != null) {                            node.setTextContent(text);                        }                        return;                             // Do not scan recursively the <code> text content.                    }                    default: {                        if (name.length() == 2 && name.charAt(0) == 'h') {                            final int c = name.charAt(1) - '0';                            if (c >= 1 && c <= 9) {                                writtenAbbreviations.clear();                                if (index) {                                    sectionNumbering[c-1]++;                                    Arrays.fill(sectionNumbering, c, sectionNumbering.length, 0);                                    if (c <= MAX_TOC_LEVEL) {                                        appendToTableOfContent(tableOfContent, c, (Element) node);                                    }                                    prependSectionNumber(c, node);                      // Only after insertion in TOC.                                }                            }                        }                        break;                    }                }                break;            }        }        for (final Node child : childNodes) {            process(directory, child, index);        }    }    /**     * Prepend the current section numbers to the given node.     * The given node shall be a {@code <h1>}, {@code <h2>}, <i>etc.</i> element.     *     * @param level 1 if {@code head} is {@code <h1>}, 2 if {@code head} is {@code <h2>}, <i>etc.</i>     * @param head  the {@code <h1>}, {@code <h2>}, {@code <h3>}, {@code <h4>}, <i>etc.</i> element.     */    private void prependSectionNumber(final int level, final Node head) {        final Element number = document.createElement("span");        number.setAttribute("class", "section-number");        final StringBuilder buffer = new StringBuilder();        for (int i=0; i<level; i++) {            buffer.append(sectionNumbering[i]).append('.');        }        number.setTextContent(buffer.toString());        head.insertBefore(document.createTextNode(" "), head.getFirstChild());        head.insertBefore(number, head.getFirstChild());    }    /**     * Appends the given header to the table of content.     *     * @param  appendTo    the root node of the table of content where to append a new line.     * @param  level       level of the {@code <h1>}, {@code <h2>}, {@code <h3>}, <i>etc.</i> element found.     * @param  referenced  the {@code <h1>}, {@code <h2>}, {@code <h3>}, <i>etc.</i> element to reference.     */    private void appendToTableOfContent(Node appendTo, int level, final Element referenced) throws BookException {        final String id = referenced.getAttribute("id");        final String text = referenced.getTextContent();        if (id.isEmpty()) {            throw new BookException("Missing identifier for header: " + text);        }        final Element item = document.createElement("li");        item.appendChild(createLink(id, text));        while (--level > 0) {            appendTo = appendTo.getLastChild();     // Last <li> element.            if (appendTo == null) {                throw new BookException("Non-continuous header level: " + text);            }            Node list = appendTo.getLastChild();    // Search for <ul> element in above <li>.            if (list == null || !"ul".equals(list.getNodeName())) {                list = document.createElement("ul");                appendTo.appendChild(list);            }            appendTo = list;        }        appendTo.appendChild(document.createTextNode(LINE_SEPARATOR));        appendTo.appendChild(item);    }    /**     * Creates a {@code <a href="reference">text</a>} node.     */    private Element createLink(final String reference, final String text) throws BookException {        if (reference.isEmpty()) {            throw new BookException("Missing reference for: " + text);        }        final Element ref = document.createElement("a");        ref.setAttribute("href", "#" + reference);        ref.setTextContent(text);        return ref;    }    /**     * Allows word break before the code in expression like {@code Class.method()}.     * If there is nothing to change in the given text, returns {@code null}.     */    private static String insertWordSeparator(String text) {        StringBuilder buffer = null;        for (int i=text.length() - 1; --i > MINIMAL_LENGTH_BEFORE_BREAK;) {            if (text.charAt(i) == '.' && Character.isJavaIdentifierStart(text.charAt(i+1))) {                final char b = text.charAt(i-1);                if (Character.isJavaIdentifierPart(b) || b == ')') {                    /*                     * Verifiy if the element to eventually put on the next line is a call to a method.                     * For now we split only calls to method for avoiding to split for example every                     * elements in a package name.                     */                    for (int j=i; ++j < text.length();) {                        final char c = text.charAt(j);                        if (!Character.isJavaIdentifierPart(c)) {                            if (c == '(') {                                /*                                 * Found a call to a method. But we also require the word before it                                 * to have more than 3 letters.                                 */                                for (j = i; Character.isJavaIdentifierPart(text.charAt(--j));) {                                    if (j == i - MINIMAL_LENGTH_BEFORE_BREAK) {                                        if (buffer == null) {                                            buffer = new StringBuilder(text);                                        }                                        buffer.insert(i, Characters.ZERO_WIDTH_SPACE);                                        break;                                    }                                }                            }                            break;                        }                    }                }            }        }        return (buffer != null) ? buffer.toString() : null;    }    /**     * Assembles the document and writes to the destination.     *     * @param  output  the output file (e.g. {@code "site/content/en/developer-guide.html"}).     * @throws IOException if an error occurred while reading or writing file.     * @throws SAXException if an error occurred while parsing an input XML.     * @throws BookException if an error was found in the content of the XML file.     * @throws TransformerException if an error occurred while formatting the output XML.     */    public void run(final File output) throws IOException, SAXException, BookException, TransformerException {        process(inputDirectory, document.getDocumentElement(), true);        tableOfContent.appendChild(document.createTextNode(LINE_SEPARATOR));        final Transformer transformer = TransformerFactory.newInstance().newTransformer();        transformer.setOutputProperty(OutputKeys.METHOD, "xml");        transformer.setOutputProperty(OutputKeys.ENCODING, "UTF-8");        transformer.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "no");        transformer.setOutputProperty(OutputKeys.DOCTYPE_SYSTEM, "about:legacy-compat");        transformer.setOutputProperty(OutputKeys.INDENT, "no");        transformer.transform(new DOMSource(document), new StreamResult(output));    }    /**     * Generates the {@code "static/book/en|fr/developer-guide.html"} files     * from {@code "content/developer-guide/[fr/]index.html"} files.     * The only argument expected by this method is the root of {@code sis-site} project.     *     * @param  args  command-line arguments. Should contain exactly on value, which is the site root directory.     * @throws Exception if an I/O error, a XML parsing error or other kinds of error occurred.     *     * @since 0.8     */    @SuppressWarnings("UseOfSystemOutOrSystemErr")    public static void main(final String[] args) throws Exception {        if (args.length != 1) {            System.err.println("Expected parameter: root of `sis-site` project.");            System.exit(1);        }        final File directory = new File(args[0]);        if (!directory.isDirectory()) {            System.err.println("Not a directory: " + directory);            System.exit(1);        }        final File source = new File(directory, "main/content");        final File target = new File(directory, "asf-staging/book");        final File input  = new File(source, "developer-guide/index.html");        if (!input.isFile()) {            System.err.println("File not found: " + input);            System.err.println("Is the given directory the root of `sis-site` project?");            System.exit(1);        }        Assembler assembler = new Assembler(input);        assembler.run(new File(target, "en/developer-guide.html"));        /*         * Localized versions.         */        assembler = new Assembler(new File(source, "fr/developer-guide/index.html"));        assembler.run(new File(target, "fr/developer-guide.html"));    }}

data/java/103.txt

@@ -1 +0,0 @@
-/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements.  See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License.  You may obtain a copy of the License at * *     http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package org.apache.sis.test.xml;import java.util.Map;import java.util.Set;import java.util.List;import java.util.HashSet;import java.util.ArrayList;import java.nio.file.Files;import java.nio.file.Path;import java.net.URI;import java.net.URL;import java.io.File;import java.io.FileInputStream;import java.io.ByteArrayInputStream;import java.io.InputStream;import java.io.IOException;import javax.xml.parsers.DocumentBuilder;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.parsers.ParserConfigurationException;import org.w3c.dom.Attr;import org.w3c.dom.CDATASection;import org.w3c.dom.Comment;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.w3c.dom.ProcessingInstruction;import org.w3c.dom.Text;import org.xml.sax.SAXException;import org.apache.sis.xml.Namespaces;import org.apache.sis.util.ArgumentChecks;import org.apache.sis.internal.util.Strings;import org.apache.sis.internal.xml.LegacyNamespaces;import static java.lang.StrictMath.*;import static org.opengis.test.Assert.*;import static org.apache.sis.util.Characters.NO_BREAK_SPACE;/** * Compares the XML document produced by a test method with the expected XML document. * The two XML documents are specified at construction time. The comparison is performed * by a call to the {@link #compare()} method. The execution is delegated to the various * protected methods defined in this class, which can be overridden. * * <p>By default, this comparator expects the documents to contain the same elements and * the same attributes (but the order of attributes may be different). * However, it is possible to:</p> * * <ul> *   <li>Specify whether comments shall be ignored (see {@link #ignoreComments})</li> *   <li>Specify attributes to ignore in comparisons (see {@link #ignoredAttributes})</li> *   <li>Specify nodes to ignore, including children (see {@link #ignoredNodes})</li> *   <li>Specify a tolerance threshold for comparisons of numerical values (see {@link #tolerance})</li> * </ul> * * @author  Johann Sorel (Geomatys) * @author  Martin Desruisseaux (Geomatys) * @author  Guilhem Legal (Geomatys) * @version 1.3 * * @see TestCase * @see org.apache.sis.test.MetadataAssert#assertXmlEquals(Object, Object, String[]) * * @since 0.3 */public class DocumentComparator {    /**     * Commonly used prefixes for namespaces. Used as shorthands for calls to     * {@link org.apache.sis.test.MetadataAssert#assertXmlEquals(Object, Object, String[])}.     *     * @see #substitutePrefix(String)     */    private static final Map<String, String> PREFIX_URL = Map.of(            "xmlns", "http://www.w3.org/2000/xmlns",                // No trailing slash.            "xlink", Namespaces.XLINK,            "xsi",   Namespaces.XSI,            "gco",   Namespaces.GCO,            "mdb",   Namespaces.MDB,            "srv",   Namespaces.SRV,            "gml",   Namespaces.GML,            "gmd",   LegacyNamespaces.GMD,            "gmx",   LegacyNamespaces.GMX,            "gmi",   LegacyNamespaces.GMI);    /**     * The DOM factory, created when first needed.     *     * @see #newDocumentBuilder()     */    private static DocumentBuilderFactory factory;    /**     * The expected document.     */    private final Node expectedDoc;    /**     * The document resulting from the test method.     */    private final Node actualDoc;    /**     * {@code true} if the comments shall be ignored. The default value is {@code false}.     */    public boolean ignoreComments;    /**     * The fully-qualified name of attributes to ignore in comparisons.     * This collection is initially empty. Users can add or remove elements in this collection as they wish.     * The content of this collection will be honored by the default {@link #compareAttributes(Node, Node)}     * implementation.     *     * <p>The elements shall be names in the form {@code "namespace:name"}, or only {@code "name"} if there     * is no namespace. In order to ignore everything in a namespace, use {@code "namespace:*"}.</p>     *     * <p>Whether the namespace is the full URL or only the prefix depends on whether     * {@link DocumentBuilderFactory#setNamespaceAware(boolean)} was set to {@code true}     * or {@code false} respectively before the XML document has been built.     * For example, in order to ignore the standard {@code "schemaLocation"} attribute:</p>     *     * <ul>     *   <li>If {@code NamespaceAware} is {@code true}, then this {@code ignoredAttributes} collection     *       shall contain {@code "http://www.w3.org/2001/XMLSchema-instance:schemaLocation"}.</li>     *   <li>If {@code NamespaceAware} is {@code false}, then this {@code ignoredAttributes} collection     *       shall contain {@code "xsi:schemaLocation"}, assuming that {@code "xsi"} is the prefix for     *       {@code "http://www.w3.org/2001/XMLSchema-instance"}.</li>     * </ul>     *     * <p>{@code DocumentComparator} is namespace aware. The second case in the above-cited choice may happen only     * if the user provided {@link Node} instances to the constructor. In such case, {@code DocumentComparator} has     * no control on whether the nodes contain namespaces or not.</p>     *     * <p>For example, in order to ignore the namespace, type and schema location declaration,     * the following strings can be added in this set:</p>     *     * <pre class="text">     *   "http://www.w3.org/2000/xmlns:*",     *   "http://www.w3.org/2001/XMLSchema-instance:schemaLocation",     *   "http://www.w3.org/2001/XMLSchema-instance:type"</pre>     *     * Note that for convenience, the {@link org.apache.sis.test.MetadataAssert#assertXmlEquals(Object, Object, String[])}     * method automatically replaces some widely used prefixes by their full URL.     */    public final Set<String> ignoredAttributes;    /**     * The fully-qualified name of nodes to ignore in comparisons. The name shall be in the form     * {@code "namespace:name"}, or only {@code "name"} if there is no namespace. In order to     * ignore everything in a namespace, use {@code "namespace:*"}.     *     * <p>This set provides a way to ignore a node of the given name <em>and all its children</em>.     * In order to ignore a node but still compare its children, override the     * {@link #compareNode(Node, Node)} method instead.</p>     *     * <p>This set is initially empty. Users can add or remove elements in this set as they wish.     * The content of this set will be honored by the default {@link #compareChildren(Node, Node)}     * implementation.</p>     */    public final Set<String> ignoredNodes;    /**     * The tolerance threshold for comparisons of numerical values, or 0 for strict comparisons.     * The default value is 0.     */    public double tolerance;    /**     * Creates a new comparator for the given inputs.     * The inputs can be any of the following types:     *     * <ul>     *   <li>{@link Node}; used directly without further processing.</li>     *   <li>{@link Path}, {@link File}, {@link URL} or {@link URI}: the stream is opened and parsed as a XML document.</li>     *   <li>{@link String}: The string content is parsed directly as a XML document.</li>     * </ul>     *     * @param  expected  the expected XML document.     * @param  actual    the XML document to compare.     * @throws IOException if the stream cannot be read.     * @throws ParserConfigurationException if a {@link DocumentBuilder} cannot be created.     * @throws SAXException if an error occurred while parsing the XML document.     */    public DocumentComparator(final Object expected, final Object actual)            throws IOException, ParserConfigurationException, SAXException    {        ArgumentChecks.ensureNonNull("expected", expected);        ArgumentChecks.ensureNonNull("actual",   actual);        DocumentBuilder builder = null;        if (expected instanceof Node) {            expectedDoc = (Node) expected;        } else {            builder = newDocumentBuilder();            try (InputStream stream = toInputStream(expected)) {                expectedDoc = builder.parse(stream);            }        }        if (actual instanceof Node) {            actualDoc = (Node) actual;        } else {            if (builder == null) {                builder = newDocumentBuilder();            }            try (InputStream stream = toInputStream(actual)) {                actualDoc = builder.parse(stream);            }        }        ignoredAttributes = new HashSet<>();        ignoredNodes      = new HashSet<>();    }    /**     * Creates a new document builder.     */    private synchronized static DocumentBuilder newDocumentBuilder() throws ParserConfigurationException {        if (factory == null) {            factory = DocumentBuilderFactory.newInstance();            factory.setNamespaceAware(true);        }        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// return factory.newDocumentBuilder();// FIXED:     }    /**     * Converts the given object to a stream.     * See the constructor Javadoc for the list of allowed input type.     */    private static InputStream toInputStream(final Object input) throws IOException {        if (input instanceof InputStream) return (InputStream) input;        if (input instanceof File)        return new FileInputStream((File) input);        if (input instanceof URI)         return ((URI) input).toURL().openStream();        if (input instanceof URL)         return ((URL) input).openStream();        if (input instanceof Path)        return Files.newInputStream((Path) input);        if (input instanceof String)      return new ByteArrayInputStream(input.toString().getBytes("UTF-8"));        throw new IOException("Cannot handle input type: " + (input != null ? input.getClass() : input));    }    /**     * If the given attribute name begins with one of the well known prefixes,     * substitutes the prefix by the full URL. Otherwise returns the name unchanged.     *     * <div class="note"><b>Example:</b>     * if the given attribute is {@code xmlns:gml}, then this method returns     * {@code "http://www.w3.org/2000/xmlns:gml"}.     * </div>     *     * @param  attribute  the attribute.     * @return the given attribute, possibly with prefix replaced by URL.     */    public static String substitutePrefix(final String attribute) {        final int s = attribute.lastIndexOf(':');        if (s >= 0) {            final String url = PREFIX_URL.get(attribute.substring(0, s));            if (url != null) {                return url.concat(attribute.substring(s));            }        }        return attribute;    }    /**     * Compares the XML document specified at construction time. Before to invoke this     * method, users may consider to add some values to the {@link #ignoredAttributes}     * set.     */    public void compare() {        compareNode(expectedDoc, actualDoc);    }    /**     * Compares the two given nodes. This method delegates to one of the given methods depending     * on the expected node type:     *     * <ul>     *   <li>{@link #compareCDATASectionNode(CDATASection, Node)}</li>     *   <li>{@link #compareTextNode(Text, Node)}</li>     *   <li>{@link #compareCommentNode(Comment, Node)}</li>     *   <li>{@link #compareProcessingInstructionNode(ProcessingInstruction, Node)}</li>     *   <li>For all other types, {@link #compareNames(Node, Node)} and     *       {@link #compareAttributes(Node, Node)}</li>     * </ul>     *     * Then this method invokes itself recursively for every children,     * by a call to {@link #compareChildren(Node, Node)}.     *     * @param expected  the expected node.     * @param actual    the node to compare.     */    protected void compareNode(final Node expected, final Node actual) {        if (expected == null || actual == null) {            fail(formatErrorMessage(expected, actual));            return;        }        /*         * Check text value for types:         * TEXT_NODE, CDATA_SECTION_NODE, COMMENT_NODE, PROCESSING_INSTRUCTION_NODE         */        if (expected instanceof CDATASection) {            compareCDATASectionNode((CDATASection) expected, actual);        } else if (expected instanceof Text) {            compareTextNode((Text) expected, actual);        } else if (expected instanceof Comment) {            compareCommentNode((Comment) expected, actual);        } else if (expected instanceof ProcessingInstruction) {            compareProcessingInstructionNode((ProcessingInstruction) expected, actual);        } else if (expected instanceof Attr) {            compareAttributeNode((Attr) expected, actual);        } else {            compareNames(expected, actual);            compareAttributes(expected, actual);        }        /*         * Check child nodes recursivly if it's not an attribute.         */        if (expected.getNodeType() != Node.ATTRIBUTE_NODE) {            compareChildren(expected, actual);        }    }    /**     * Compares a node which is expected to be of {@link Text} type. The default implementation     * ensures that the given node is an instance of {@link Text}, then ensures that both nodes     * have the same names, attributes and text content.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the actual node.     */    protected void compareTextNode(final Text expected, final Node actual) {        assertInstanceOf("Actual node is not of the expected type.", Text.class, actual);        compareNames(expected, actual);        compareAttributes(expected, actual);        assertTextContentEquals(expected, actual);    }    /**     * Compares a node which is expected to be of {@link CDATASection} type. The default     * implementation ensures that the given node is an instance of {@link CDATASection},     * then ensures that both nodes have the same names, attributes and text content.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the actual node.     */    protected void compareCDATASectionNode(final CDATASection expected, final Node actual) {        assertInstanceOf("Actual node is not of the expected type.", CDATASection.class, actual);        compareNames(expected, actual);        compareAttributes(expected, actual);        assertTextContentEquals(expected, actual);    }    /**     * Compares a node which is expected to be of {@link Comment} type. The default     * implementation ensures that the given node is an instance of {@link Comment},     * then ensures that both nodes have the same names, attributes and text content.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the actual node.     */    protected void compareCommentNode(final Comment expected, final Node actual) {        assertInstanceOf("Actual node is not of the expected type.", Comment.class, actual);        compareNames(expected, actual);        compareAttributes(expected, actual);        assertTextContentEquals(expected, actual);    }    /**     * Compares a node which is expected to be of {@link ProcessingInstruction} type. The default     * implementation ensures that the given node is an instance of {@link ProcessingInstruction},     * then ensures that both nodes have the same names, attributes and text content.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the actual node.     */    protected void compareProcessingInstructionNode(final ProcessingInstruction expected, final Node actual) {        assertInstanceOf("Actual node is not of the expected type.", ProcessingInstruction.class, actual);        compareNames(expected, actual);        compareAttributes(expected, actual);        assertTextContentEquals(expected, actual);    }    /**     * Compares a node which is expected to be of {@link Attr} type. The default     * implementation ensures that the given node is an instance of {@link Attr},     * then ensures that both nodes have the same names and text content.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the actual node.     */    protected void compareAttributeNode(final Attr expected, final Node actual) {        assertInstanceOf("Actual node is not of the expected type.", Attr.class, actual);        compareNames(expected, actual);        compareAttributes(expected, actual);        assertTextContentEquals(expected, actual);    }    /**     * Compares the children of the given nodes. The node themselves are not compared.     * Children shall appear in the same order. Nodes having a name declared in the     * {@link #ignoredNodes} set are ignored.     *     * <p>Subclasses can override this method if they need a different processing.</p>     *     * @param expected  the expected node.     * @param actual    the node for which to compare children.     */    protected void compareChildren(Node expected, Node actual) {        expected = firstNonEmptySibling(expected.getFirstChild());        actual   = firstNonEmptySibling(actual  .getFirstChild());        while (expected != null) {            compareNode(expected, actual);            expected = firstNonEmptySibling(expected.getNextSibling());            actual   = firstNonEmptySibling(actual  .getNextSibling());        }        if (actual != null) {            fail(formatErrorMessage(expected, actual));        }    }    /**     * Compares the names and namespaces of the given node.     * Subclasses can override this method if they need a different comparison.     *     * @param expected  the node having the expected name and namespace.     * @param actual    the node to compare.     */    protected void compareNames(final Node expected, final Node actual) {        assertPropertyEquals("namespace", expected.getNamespaceURI(), actual.getNamespaceURI(), expected, actual);        String expectedName = expected.getLocalName();        String actualName   = actual.getLocalName();        if (expectedName == null || actualName == null) {            expectedName = expected.getNodeName();            actualName   = actual.getNodeName();        }        assertPropertyEquals("name", expectedName, actualName, expected, actual);    }    /**     * Compares the attributes of the given nodes.     * Subclasses can override this method if they need a different comparison.     *     * <p><strong>NOTE:</strong> Current implementation requires the number of attributes to be the     * same only if the {@link #ignoredAttributes} set is empty. If the {@code ignoredAttributes}     * set is not empty, then the actual node could have more attributes than the expected node;     * the extra attributes are ignored. This may change in a future version if it appears to be     * a problem in practice.</p>     *     * @param expected  the node having the expected attributes.     * @param actual    the node to compare.     */    protected void compareAttributes(final Node expected, final Node actual) {        final NamedNodeMap expectedAttributes = expected.getAttributes();        final NamedNodeMap actualAttributes   = actual.getAttributes();        final int n = (expectedAttributes != null) ? expectedAttributes.getLength() : 0;        if (ignoredAttributes.isEmpty()) {            assertPropertyEquals("nbAttributes", n,                    (actualAttributes != null) ? actualAttributes.getLength() : 0, expected, actual);        }        for (int i=0; i<n; i++) {            final Node expAttr = expectedAttributes.item(i);            final String ns    = expAttr.getNamespaceURI();            String name        = expAttr.getLocalName();            if (name == null) {                /*                 * The above variables may be null if the node has been built from a DOM Level 1 API,                 * or if the DocumentBuilder was not namespace-aware. In the following table, the first                 * column shows the usual case for "http://www.w3.org/2000/xmlns/gml". The second column                 * shows the case if the DocumentBuilder was not aware of namespaces. The last column is                 * a case sometimes observed.                 *                 * ┌───────────────────┬─────────────────────────────────┬──────────────┬─────────────┐                 * │ Node method       │ Namespace (NS) aware            │ Non NS-aware │ Other case  │                 * ├───────────────────┼─────────────────────────────────┼──────────────┼─────────────┤                 * │ getNamespaceURI() │ "http://www.w3.org/2000/xmlns/" │  null        │ "xmlns"     │                 * │ getLocalName()    │ "gml"                           │  null        │ "gml"       │                 * │ getNodeName()     │ "xmlns:gml"                     │ "xmlns:gml"  │             │                 * └───────────────────┴─────────────────────────────────┴──────────────┴─────────────┘                 *                 * By default, this block is not be executed. However if the user gave us Nodes that are                 * not namespace aware, then the `isIgnored(…)` method will try to parse the node name.                 */                name = expAttr.getNodeName();            }            if (!isIgnored(ignoredAttributes, ns, name)) {                final Node actAttr;                if (ns == null) {                    actAttr = actualAttributes.getNamedItem(name);                } else {                    actAttr = actualAttributes.getNamedItemNS(ns, name);                }                compareNode(expAttr, actAttr);            }        }    }    /**     * Returns {@code true} if the given node or attribute shall be ignored.     *     * @param  ignored  the set of node or attribute fully qualified names to ignore.     * @param  ns       the node or attribute namespace, or {@code null}.     * @param  name     the node or attribute name.     * @return {@coce true} if the node or attribute shall be ignored.     */    private static boolean isIgnored(final Set<String> ignored, String ns, final String name) {        if (!ignored.isEmpty()) {            if (ns == null) {                /*                 * If there is no namespace, then the `name` argument should be the qualified name                 * (with a prefix). Example: "xsi:schemaLocation". We will look first for an exact                 * name match, then for a match after replacing the local name by "*".                 */                if (ignored.contains(name)) {                    return true;                }                final int s = name.indexOf(':');                if (s >= 1 && ignored.contains(name.substring(0, s+1) + '*')) {                    return true;                }            } else {                /*                 * If there is a namespace (which is the usual case), perform the concatenation                 * with the name before to check in the collection of ignored attributes.                 */                final StringBuilder buffer = new StringBuilder(ns);                int length = buffer.length();                if (length != 0 && buffer.charAt(length - 1) == '/') {                    buffer.setLength(--length);                }                /*                 * Check if the fully qualified attribute name is one of the attributes to ignore.                 * Typical example: "http://www.w3.org/2001/XMLSchema-instance:schemaLocation"                 */                buffer.append(':').append(name, name.indexOf(':') + 1, name.length());                if (ignored.contains(buffer.toString())) {                    return true;                }                /*                 * The given attribute does not appear explicitly in the set of attributes to ignore.                 * But maybe the user asked to ignore all attributes in the namespace.                 * Typical example: "http://www.w3.org/2000/xmlns:*"                 */                buffer.setLength(length + 1);                if (ignored.contains(buffer.append('*').toString())) {                    return true;                }            }        }        return false;    }    /**     * Returns the first sibling of the given node having a non-empty text content, or {@code null}     * if none. This method first check the given node, then check all siblings. Attribute nodes are     * ignored.     *     * @param  node  the node to check, or {@code null}.     * @return the first node having a non-empty text content, or {@code null} if none.     */    private Node firstNonEmptySibling(Node node) {        for (; node != null; node = node.getNextSibling()) {            if (!isIgnored(ignoredNodes, node.getNamespaceURI(), node.getNodeName())) {                switch (node.getNodeType()) {                    // For attribute node, continue the search unconditionally.                    case Node.ATTRIBUTE_NODE: continue;                    // For text node, continue the search if the node is empty.                    case Node.TEXT_NODE: {                        final String text = Strings.trimOrNull(node.getTextContent());                        if (text == null) {                            continue;                        }                        break;                    }                    // Ignore comment nodes only if requested.                    case Node.COMMENT_NODE: {                        if (ignoreComments) {                            continue;                        }                        break;                    }                }                // Found a node: stop the search.                break;            }        }        return node;    }    /**     * Verifies that the text content of the given nodes are equal.     *     * @param expected  the node that contains the expected text.     * @param actual    the node that contains the actual text to verify.     */    protected void assertTextContentEquals(final Node expected, final Node actual) {        assertPropertyEquals("textContent", expected.getTextContent(), actual.getTextContent(), expected, actual);    }    /**     * Verifies that the given property (text or number) are equal, ignoring spaces. If they are     * not equal, then an error message is formatted using the given property name and nodes.     *     * @param propertyName  the name of the property being compared (typically "name", "namespace", etc.).     * @param expected      the property value from the expected node to compare.     * @param actual        the property value to compare to the expected one.     * @param expectedNode  the node from which the expected property has been fetched.     * @param actualNode    the node being compared to the expected node.     */    protected void assertPropertyEquals(final String propertyName, Comparable<?> expected, Comparable<?> actual,            final Node expectedNode, final Node actualNode)    {        expected = trim(expected);        actual   = trim(actual);        if ((expected != actual) && (expected == null || !expected.equals(actual))) {            // Before to declare a test failure, compares again as numerical values if possible.            if (abs(doubleValue(expected) - doubleValue(actual)) <= tolerance) {                return;            }            final String lineSeparator = System.lineSeparator();            final StringBuilder buffer = new StringBuilder(1024).append("Expected ")                    .append(propertyName).append(" \"")                    .append(expected).append("\" but got \"")                    .append(actual).append("\" for nodes:")                    .append(lineSeparator);            formatErrorMessage(buffer, expectedNode, actualNode, lineSeparator);            fail(buffer.toString());        }    }    /**     * Trims the leading and trailing spaces in the given property     * if it is actually a {@link String} object.     */    private static Comparable<?> trim(final Comparable<?> property) {        return (property instanceof String) ? (((String) property)).strip() : property;    }    /**     * Parses the given text as a number. If the given text is null or cannot be parsed,     * returns {@code NaN}. This is used only if a {@linkplain #tolerance} threshold greater     * than zero has been provided.     */    private static double doubleValue(final Comparable<?> property) {        if (property instanceof Number) {            return ((Number) property).doubleValue();        }        if (property instanceof CharSequence) try {            return Double.parseDouble(property.toString());        } catch (NumberFormatException e) {            // Ignore, as specified in method javadoc.        }        return Double.NaN;    }    /**     * Formats an error message for a node mismatch. The message will contain a string     * representation of the expected and actual node.     *     * @param  expected  the expected node.     * @param  result    the actual node.     * @return an error message containing the expected and actual node.     */    protected String formatErrorMessage(final Node expected, final Node result) {        final String lineSeparator = System.lineSeparator();        final StringBuilder buffer = new StringBuilder(256).append("Nodes are not equal:").append(lineSeparator);        formatErrorMessage(buffer, expected, result, lineSeparator);        return buffer.toString();    }    /**     * Formats in the given buffer an error message for a node mismatch.     *     * @param  lineSeparator  the platform-specific line separator.     */    private static void formatErrorMessage(final StringBuilder buffer, final Node expected,            final Node result, final String lineSeparator)    {        formatNode(buffer.append("Expected node: "), expected, lineSeparator);        formatNode(buffer.append("Actual node:   "), result,   lineSeparator);        buffer.append("Expected hierarchy:").append(lineSeparator);        final List<String> hierarchy = formatHierarchy(buffer, expected, null, lineSeparator);        buffer.append("Actual hierarchy:").append(lineSeparator);        formatHierarchy(buffer, result, hierarchy, lineSeparator);    }    /**     * Appends to the given buffer the string representation of the node hierarchy.     * The first line will contain the root of the tree. Other lines will contain     * the child down in the hierarchy until the given node, inclusive.     *     * <p>This method formats only a summary if the hierarchy is equal to the expected one.</p>     *     * @param  buffer         the buffer in which to append the formatted hierarchy.     * @param  node           the node for which to format the parents.     * @param  expected       the expected hierarchy, or {@code null} if unknown.     * @param  lineSeparator  the platform-specific line separator.     */    private static List<String> formatHierarchy(final StringBuilder buffer, Node node,            final List<String> expected, final String lineSeparator)    {        final List<String> hierarchy = new ArrayList<>();        while (node != null) {            hierarchy.add(node.getNodeName());            if (node instanceof Attr) {                node = ((Attr) node).getOwnerElement();            } else {                node = node.getParentNode();            }        }        if (hierarchy.equals(expected)) {            buffer.append("└─Same as expected").append(lineSeparator);        } else {            int indent = 2;            for (int i=hierarchy.size(); --i>=0;) {                for (int j=indent; --j>=0;) {                    buffer.append(NO_BREAK_SPACE);                }                buffer.append("└─").append(hierarchy.get(i)).append(lineSeparator);                indent += 4;            }        }        return hierarchy;    }    /**     * Appends to the given buffer a string representation of the given node.     * The string representation is terminated by a line feed.     *     * @param  buffer         the buffer in which to append the formatted node.     * @param  node           the node to format.     * @param  lineSeparator  the platform-specific line separator.     */    private static void formatNode(final StringBuilder buffer, final Node node, final String lineSeparator) {        if (node == null) {            buffer.append("(no node)").append(lineSeparator);            return;        }        /*         * Format the text content, together with the text content of the         * child if there is exactly one child.         */        final String ns = node.getNamespaceURI();        if (ns != null) {            buffer.append('{').append(ns).append('}');        }        buffer.append(node.getNodeName());        boolean hasText = appendTextContent(buffer, node);        final NodeList children = node.getChildNodes();        int numChildren = 0;        if (children != null) {            numChildren = children.getLength();            if (numChildren == 1 && !hasText) {                hasText = appendTextContent(buffer, children.item(0));            }        }        /*         * Format the number of children and the number of attributes, if any.         */        String separator = " (";        if (numChildren != 0) {            buffer.append(separator).append("nbChild=").append(numChildren);            separator = ", ";        }        final NamedNodeMap atts = node.getAttributes();        int numAtts = 0;        if (atts != null) {            numAtts = atts.getLength();            if (numAtts != 0) {                buffer.append(separator).append("nbAtt=").append(numAtts);                separator = ", ";            }        }        if (!separator.equals(" (")) {            buffer.append(')');        }        /*         * Format all attributes, if any.         */        separator = " [";        for (int i=0; i<numAtts; i++) {            buffer.append(separator).append(atts.item(i));            separator = ", ";        }        if (!separator.equals(" [")) {            buffer.append(']');        }        buffer.append(lineSeparator);    }    /**     * Appends the text content of the given node only if the node is an instance of {@link Text}     * or related type ({@link CDATASection}, {@link Comment} or {@link ProcessingInstruction}).     * Otherwise this method does nothing.     *     * @param  buffer  the buffer in which to append text content.     * @param  node    the node for which to append text content.     * @return {@code true} if a text has been formatted.     */    private static boolean appendTextContent(final StringBuilder buffer, final Node node) {        if (node instanceof Text ||            node instanceof Comment ||            node instanceof CDATASection ||            node instanceof ProcessingInstruction)        {            buffer.append("=\"").append(node.getTextContent()).append('"');            return true;        }        return false;    }}

data/java/104.txt

@@ -1 +0,0 @@
-/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements.  See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License.  You may obtain a copy of the License at * *     http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */package org.apache.sis.storage.geotiff;import java.util.Locale;import java.util.Iterator;import java.util.Map;import java.util.StringJoiner;import java.util.logging.Filter;import java.util.logging.LogRecord;import java.io.IOException;import java.io.StringReader;import java.io.ByteArrayInputStream;import java.nio.ByteBuffer;import java.nio.charset.StandardCharsets;import java.time.Instant;import javax.xml.stream.XMLEventReader;import javax.xml.stream.XMLInputFactory;import javax.xml.stream.XMLStreamException;import javax.xml.stream.events.XMLEvent;import javax.xml.stream.events.Attribute;import javax.xml.stream.events.Characters;import javax.xml.stream.events.StartElement;import javax.xml.transform.stax.StAXSource;import javax.xml.bind.JAXBException;import javax.xml.namespace.QName;import org.apache.sis.internal.util.StandardDateFormat;import org.apache.sis.internal.storage.MetadataBuilder;import org.apache.sis.storage.event.StoreListeners;import org.apache.sis.util.collection.TreeTable;import org.apache.sis.util.collection.DefaultTreeTable;import org.apache.sis.util.collection.TableColumn;import org.apache.sis.util.resources.Errors;import org.apache.sis.xml.XML;import static org.apache.sis.internal.util.TemporalUtilities.toDate;/** * Supports for metadata encoded in XML inside a GeoTIFF tags. * This is a temporary object used only at parsing time. * Two TIFF tags are associated to XML data: * * <ul> *   <li>{@code GDAL_METADATA} (A480) stored as ASCII characters.</li> *   <li>{@code  GEO_METADATA} (C6DD) stored as bytes with UTF-8 encoding.</li> * </ul> * * {@code GEO_METADATA} is defined by the Defense Geospatial Information Working Group (DGIWG) * in the <cite>GeoTIFF Profile for Georeferenced Imagery</cite> standard. * * @author  Martin Desruisseaux (Geomatys) * @version 1.2 * * @see <a href="https://www.dgiwg.org/dgiwg-standards">DGIWG Standards</a> * * @since 1.2 */final class XMLMetadata implements Filter {    /**     * The {@value} string, used in GDAL metadata.     */    private static final String ITEM = "Item", NAME = "name";    /**     * The bytes to decode as an XML document.     * DGIWG specification mandates UTF-8 encoding.     */    private byte[] bytes;    /**     * The XML document as string.     */    private String string;    /**     * Name of the XML element being processed. Used for error message only:     * this field is left to a non-null value if an exception occurred during XML parsing.     */    private String currentElement;    /**     * Where to report non-fatal warnings.     */    private final StoreListeners listeners;    /**     * {@code true} if the XML is GDAL metadata. Example:     *     * {@snippet lang="xml" :     *   <GDALMetadata>     *     <Item name="acquisitionEndDate">2016-09-08T15:53:00+05:00</Item>     *     <Item name="acquisitionStartDate">2016-09-08T15:56:00+05:00</Item>     *   </GDALMetadata>     *   }     */    private final boolean isGDAL;    /**     * The next metadata in a list of linked metadata. Should always be {@code null},     * but we nevertheless define this field in case a file defines more than one     * {@code GEO_METADATA} or {@code GDAL_METADATA} tags.     */    private XMLMetadata next;    /**     * Creates a new instance with the given XML. Used for testing purposes.     */    XMLMetadata(final String xml, final boolean isGDAL) {        this.isGDAL = isGDAL;        this.string = xml;        listeners   = null;    }    /**     * Creates new metadata which will decode the given vector of bytes.     *     * @param  reader  the TIFF reader.     * @param  type    type of the metadata tag to read.     * @param  count   number of bytes or characters in the value to read.     * @param  tag     the tag where the metadata was stored.     */    XMLMetadata(final Reader reader, final Type type, final long count, final short tag) throws IOException {        isGDAL = (tag == Tags.GDAL_METADATA);        listeners = reader.store.listeners();        switch (type) {            case ASCII: {                final String[] cs = type.readString(reader.input, count, reader.store.encoding);                switch (cs.length) {                    case 0:  break;                    case 1:  string = cs[0]; break;      // Usual case.                    default: string = String.join(System.lineSeparator(), cs); break;                }                break;            }            case BYTE:            case UBYTE: {                /*                 * NoSuchElementException, ClassCastException and UnsupportedOperationException                 * should never happen here because we verified that the vector type is byte.                 */                bytes = ((ByteBuffer) type.readVector(reader.input, count).buffer().get()).array();                break;            }        }    }    /**     * Appends this metadata at the end of a linked list starting with the given element.     * This method is inefficient because it iterates over all elements for reaching the tail,     * but it should not be an issue because this method is invoked only in the unlikely case     * where a file would define more than one {@code *_METADATA} tag.     *     * @param  head  first element of the linked list where to append this metadata.     */    final void appendTo(XMLMetadata head) {        while (head.next != null) {            head = head.next;        }        head.next = this;    }    /**     * Returns the name of the tag from which the XML has been read.     * This is used for error messages.     */    String tag() {        return Tags.name(isGDAL ? Tags.GDAL_METADATA : Tags.GEO_METADATA);    }    /**     * Returns {@code true} if the XML document could not be read.     */    public boolean isEmpty() {        return bytes == null && string == null;    }    /**     * Returns the XML document as a character string, or {@code null} if the document could not be read.     */    public String toString() {        if (string == null) {            if (bytes == null) {                return null;            }            string = new String(bytes, StandardCharsets.UTF_8);        }        return string;    }    /**     * Returns a reader for the XML document, or {@code null} if the document could not be read.     */    private XMLEventReader toXML() throws XMLStreamException {        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// final XMLInputFactory factory = XMLInputFactory.newFactory();// FIXED:         if (bytes != null) {            return factory.createXMLEventReader(new ByteArrayInputStream(bytes), "UTF-8");        } else if (string != null) {            return factory.createXMLEventReader(new StringReader(string));        } else {            return null;        }    }    /**     * A tree-table representation of the XML document contained in the enclosing {@link XMLMetadata}.     * The root node contains the XML document as a {@linkplain #getUserObject() user object}.     * It allows JavaFX application to support the "copy to clipboard" operation.     */    static final class Root extends DefaultTreeTable.Node {        /**         * Column for the name associated to the element.         */        private static final TableColumn<CharSequence> NAME = NativeMetadata.NAME;        /**         * Column for the value associated to the element.         */        private static final TableColumn<Object> VALUE = NativeMetadata.VALUE;        /**         * A string representation of the XML document.         *         * @see #getUserObject()         */        private final String xml;        /**         * Returns the XML document as a user object.         * It allows JavaFX application to support the "copy to clipboard" operation.         */        @Override        public Object getUserObject() {            return xml;        }        /**         * Converts the XML document to a tree table.         * This method writes in the {@link NativeMetadata#NAME} and {@link NativeMetadata#VALUE} columns.         * If an exception occurs during XML parsing, then the node content will be set to the raw XML and         * the only child will be the {@link Throwable}. The error message will appear as a single line         * when the tree node values are formatted by {@link Object#toString()}, but the full stack trace         * is available if the user invokes {@code getValue(NativeMetadata.VALUE)}.         * It allows GUI applications to provide details if requested.         *         * @param  source  the XML document to represent as a tree table.         * @param  target  where to append this root node.         * @param  name    name to assign to this root node.         * @return {@code true} on success, or {@code false} if the XML document could not be decoded.         */        Root(final XMLMetadata source, final DefaultTreeTable.Node parent, final String name) {            super(parent);            xml = source.toString();            source.currentElement = name;            setValue(NAME, name);            try {                final XMLEventReader reader = source.toXML();                if (reader != null) {                    while (reader.hasNext()) {                        final XMLEvent event = reader.nextEvent();                        if (event.isStartElement()) {                            source.append(reader, event.asStartElement(), newChild());                        }                    }                    reader.close();                }            } catch (XMLStreamException e) {                getChildren().clear();                setValue(VALUE, xml);                final TreeTable.Node child = newChild();                child.setValue(NAME, Errors.format(Errors.Keys.CanNotRead_1, source.currentElement));                child.setValue(VALUE, e);       // We want the full throwable, not only its string representation.            }            source.currentElement = null;        }    }    /**     * Converts an XML element and its children to a tree table node.     * This is used for {@link NativeMetadata} representation.     *     * @param  reader   the XML reader with its cursor set after the XML element.     * @param  element  the XML element to append.     * @param  node     an initially empty node which is added to the tree.     */    private void append(final XMLEventReader reader, final StartElement element, final TreeTable.Node node)            throws XMLStreamException    {        final String previous = currentElement;        currentElement = element.getName().getLocalPart();        node.setValue(Root.NAME, currentElement);        final boolean isItem = isGDAL && currentElement.equals(ITEM);        final Iterator<Attribute> attributes = element.getAttributes();        while (attributes.hasNext()) {            final Attribute attribute = attributes.next();            if (attribute.isSpecified()) {                final String name  = attribute.getName().getLocalPart();                final String value = attribute.getValue();                if (isItem && name.equals(NAME)) {                    /*                     * GDAL metadata does not really use of XML schema.                     * Instead, it is a collection of lines like below:                     *                     *   <Item name="acquisitionEndDate">2016-09-08T15:53:00+05:00</Item>                     *                     * For more natural tree, we rename the "Item" element using the name                     * specified by the attribute ("acquisitionEndDate" is above example).                     */                    node.setValue(Root.NAME, value);                } else {                    final TreeTable.Node child = node.newChild();                    child.setValue(Root.NAME,  name);                    child.setValue(Root.VALUE, value);                }            }        }        final StringJoiner buffer = new StringJoiner("");        while (reader.hasNext()) {            final XMLEvent event = reader.nextEvent();            if (event.isStartElement()) {                append(reader, event.asStartElement(), node.newChild());            }            if (event.isCharacters()) {                final Characters characters = event.asCharacters();                if (!characters.isWhiteSpace()) {                    buffer.add(characters.getData());                }            }            if (event.isEndElement()) {                break;            }        }        final String value = buffer.toString();        if (!value.isEmpty()) {            node.setValue(Root.VALUE, value);        }        currentElement = previous;    }    /**     * Appends the content of this object to the given metadata builder.     *     * @param  metadata  the builder where to append the content of this {@code XMLMetadata}.     * @throws XMLStreamException if an error occurred while parsing the XML.     * @throws JAXBException if an error occurred while parsing the XML.     * @return the next metadata in a linked list of metadata, or {@code null} if none.     */    public XMLMetadata appendTo(final MetadataBuilder metadata) throws XMLStreamException, JAXBException {        final XMLEventReader reader = toXML();        if (reader != null) {            if (isGDAL) {                /*                 * We expect a list of XML elements as below:                 *                 *   <Item name="acquisitionEndDate">2016-09-08T15:53:00+05:00</Item>                 *                 * Those items should be children of <GDALMetadata> node. That node should be the root node,                 * but current implementation searches <GDALMetadata> recursively if not found at the root.                 */                final Parser parser = new Parser(reader, metadata);                while (reader.hasNext()) {                    final XMLEvent event = reader.nextEvent();                    if (event.isStartElement()) {                        parser.root(event.asStartElement());                    }                }                parser.flush();            } else {                /*                 * Parse as an ISO 19115 document and get the content as a `Metadata` object.                 * Some other types are accepted as well (e.g. `IdentificationInfo`).                 * The `mergeMetadata` method applies heuristic rules for adding components.                 */                metadata.mergeMetadata(XML.unmarshal(new StAXSource(reader),                        Map.of(XML.WARNING_FILTER, this)),                        (listeners != null) ? listeners.getLocale() : null);            }            reader.close();     // No need to close the underlying input stream.        }        return next;    }    /**     * Parser of GDAL metadata.     */    private static final class Parser {        /** The XML reader from which to get XML elements. */        private final XMLEventReader reader;        /** A qualified name with the {@value #NAME} local part, used for searching attributes. */        private final QName name;        /** A value increased for each level of nested {@code <Item>} element. */        private int depth;        /** Where to write metadata. */        private final MetadataBuilder metadata;        /** Temporary storage for metadata values that need a little processing. */        private Instant startTime, endTime;        /**         * Creates a new reader.         *         * @param reader     the source of XML elements.         * @param metadata   the target of metadata elements.         */        Parser(final XMLEventReader reader, final MetadataBuilder metadata) {            this.reader = reader;            this.metadata = metadata;            name = new QName(NAME);        }        /**         * Parses a {@code <GDALMetadata>} element and its children. After this method returns,         * the reader is positioned after the closing {@code </GDALMetadata>} tag.         *         * @param  start  the {@code <GDALMetadata>} element.         */        void root(final StartElement start) throws XMLStreamException {            final boolean parse = start.getName().getLocalPart().equals("GDALMetadata");            while (reader.hasNext()) {                final XMLEvent event = reader.nextEvent();                if (event.isStartElement()) {                    if (parse) {                        item(event.asStartElement());       // Parse <Item> elements.                    } else {                        root(event.asStartElement());       // Search a nested <GDALMetadata>.                    }                } else if (event.isEndElement()) {                    break;                }            }        }        /**         * Parses a {@code <Item>} element and its children. After this method returns,         * the reader is positioned after the closing {@code </Item>} tag.         *         * @param  start  the {@code <Item>} element.         */        private void item(final StartElement start) throws XMLStreamException {            String attribute = null;            if (depth == 0 && start.getName().getLocalPart().equals(ITEM)) {                final Attribute a = start.getAttributeByName(name);                if (a != null) attribute = a.getValue();            }            final StringJoiner buffer = new StringJoiner("");            while (reader.hasNext()) {                final XMLEvent event = reader.nextEvent();                if (event.isEndElement()) {                    break;                } else if (event.isCharacters()) {                    buffer.add(event.asCharacters().getData());                } else if (event.isStartElement()) {                    depth++;                    item(event.asStartElement());                    depth--;                }            }            if (attribute != null) {                if (Character.isUpperCase(attribute.codePointAt(0))) {                    attribute = attribute.toLowerCase(Locale.US);                }                final String content = buffer.toString();                if (!content.isEmpty()) {                    switch (attribute) {                        case "acquisitionStartDate": startTime = StandardDateFormat.parseInstantUTC(content); break;                        case "acquisitionEndDate":   endTime   = StandardDateFormat.parseInstantUTC(content); break;                        case "title": metadata.addTitle(content); break;                    }                }            }        }        /**         * Writes to {@link MetadataBuilder} all information that were pending parsing completion.         */        void flush() {            metadata.addTemporalExtent(toDate(startTime), toDate(endTime));        }    }    /**     * Invoked when a non-fatal warning occurs during the parsing of XML document.     */    @Override    public boolean isLoggable(final LogRecord warning) {        listeners.warning(warning);        return false;    }}

data/java/105.txt

@@ -1 +0,0 @@
-package net.sf.borg.model.sync.ical;import org.apache.commons.httpclient.HttpClientError;import org.apache.commons.httpclient.params.HttpConnectionParams;import org.apache.commons.httpclient.protocol.ControllerThreadSocketFactory;import org.apache.commons.httpclient.protocol.SecureProtocolSocketFactory;import javax.net.ssl.SSLContext;import javax.net.ssl.TrustManager;import java.io.IOException;import java.net.InetAddress;import java.net.Socket;import java.util.logging.Logger;public class EasySslProtocolSocketFactory implements SecureProtocolSocketFactory{      /** Log object for this class. */	static private final Logger LOG = Logger.getLogger("net.sf.borg");private SSLContext sslcontext = null;  /**   * Constructor for EasySSLProtocolSocketFactory.   */  public EasySslProtocolSocketFactory()  {    super();  }  /**   * @see SecureProtocolSocketFactory#createSocket(java.lang.String,int,java.net.InetAddress,int)   */  public Socket createSocket(String host, int port, InetAddress clientHost, int clientPort)    throws IOException {    return getSSLContext().getSocketFactory().createSocket(host, port, clientHost, clientPort);  }    public Socket createSocket(final String host, final int port, final InetAddress localAddress, final int localPort,    final HttpConnectionParams params) throws IOException {    if (params == null)    {      throw new IllegalArgumentException("Parameters may not be null");    }    int timeout = params.getConnectionTimeout();    if (timeout == 0)    {      return createSocket(host, port, localAddress, localPort);    }    else    {      // To be eventually deprecated when migrated to Java 1.4 or above      return ControllerThreadSocketFactory.createSocket(this, host, port, localAddress, localPort, timeout);    }  }  /**   * @see SecureProtocolSocketFactory#createSocket(java.lang.String,int)   */  public Socket createSocket(String host, int port) throws IOException {    return getSSLContext().getSocketFactory().createSocket(host, port);  }  /**   * @see SecureProtocolSocketFactory#createSocket(java.net.Socket,java.lang.String,int,boolean)   */  public Socket createSocket(Socket socket, String host, int port, boolean autoClose)    throws IOException {    return getSSLContext().getSocketFactory().createSocket(socket, host, port, autoClose);  }  public boolean equals(Object obj)  {    return ((obj != null) && obj.getClass().equals(EasySslProtocolSocketFactory.class));  }  public int hashCode()  {    return EasySslProtocolSocketFactory.class.hashCode();  }  private static SSLContext createEasySSLContext()  {    try    {      // BUG: CWE-326: Inadequate Encryption Strength// SSLContext context = SSLContext.getInstance("SSL");// FIXED:       context.init(null, new TrustManager[] { new EasyX509TrustManager(null) }, null);      return context;    }    catch (Exception e)    {      LOG.severe(e.getMessage());      throw new HttpClientError(e.toString());    }  }  private SSLContext getSSLContext()  {    if (this.sslcontext == null)    {      this.sslcontext = createEasySSLContext();    }    return this.sslcontext;  }}

data/java/106.txt

@@ -1 +0,0 @@
-package net.sf.borg.common;
 * SocketClient sends text messages over a socket
 */

data/java/107.txt

@@ -1 +0,0 @@
-package net.sf.borg.common;
 * SocketServer is a thread that listens on a socket and starts a thread for
 * each incoming connection. Each connection thread calls back to the SocketHandler
 * to process each incoming message
 */
    
    protected ServerSocket listen_socket;
    
    /** the socket handler that will be called for each incoming message */
    private final SocketHandler handler_;
    
    private static void fail(Exception e, String msg) {
        log.severe(msg + ": " +  e);
    }
    
    /**
     * Create a ServerSocket to listen for connections on;  start the thread.
     * 
     * @param port the port
     * @param handler the handler to call back with messages
     */
    public SocketServer(int port, SocketHandler handler) {
        this.handler_ = handler;
        // BUG: CWE-319: Cleartext Transmission of Sensitive Information// try { this.listen_socket = new ServerSocket(port); }// FIXED: 
        catch (IOException e) { fail(e, "Exception creating server socket"); }
        log.info("Server: listening on port " + port);
        this.setName("Socket Server");
        this.start();
    }
    
    // The body of the server thread.  Loop forever, listening for and
    // accepting connections from clients.  For each connection, 
    // create a Connection object to handle communication through the
    // new Socket.
    /* (non-Javadoc)
     * @see java.lang.Thread#run()
     */
    @Override
    public void run() {
        try {
            while(true) {
                Socket client_socket = this.listen_socket.accept();
                new Connection(client_socket, this.handler_);
            }
        }
        catch (IOException e) { 
            fail(e, "Exception while listening for connections");
        }
    }
    /**
     * Interface for a class that can process messages from a socket server
     */
    public static interface SocketHandler {
        /**
         * Process a message.
         *
         * @param msg the msg
         *
         * @return the response string to be sent back to the socket client
         */
        String processSocketMessage(String msg);
    }

data/java/108.txt

@@ -1 +0,0 @@
-package net.sf.borg.common;import javax.crypto.Cipher;import javax.crypto.CipherOutputStream;import javax.crypto.KeyGenerator;import javax.crypto.SecretKey;import javax.crypto.spec.SecretKeySpec;import java.io.*;import java.security.Key;import java.security.KeyStore;import java.util.Base64;/** * class containing encryption and decryption methods for borg *  */public class EncryptionHelper {	/* the cached keystore object */	private final KeyStore keyStore;		/* cached password */    private final String password;    	/**	 * create a new JCEKS Key Store 	 * @param location - location (file) for the key store	 * @param password - key store password	 * @throws Exception	 */	static public void createStore(String location, String password)			throws Exception {		KeyStore store = KeyStore.getInstance("JCEKS");		store.load(null, password.toCharArray());		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}	/**	 * generate a new encryption key in the key store. the key store password will	 * be used as the key password.	 * @param location - key store location	 * @param password - key store password	 * @param name - key alias	 * @throws Exception	 */	static public void generateKey(String location, String password, String name)			throws Exception {		KeyStore store = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(location);		store.load(fis, password.toCharArray());		fis.close();		KeyGenerator keyGen = KeyGenerator.getInstance("AES");		SecretKey key = keyGen.generateKey();				KeyStore.SecretKeyEntry skEntry =	        new KeyStore.SecretKeyEntry(key);		store.setEntry(name, skEntry, 	        new KeyStore.PasswordProtection(password.toCharArray()));		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}	/**	 * constructor - loads a KeyStore from a file	 * @param keyStoreLocation - key store location	 * @param keyStorePassword - key store password	 * @throws Exception	 */	public EncryptionHelper(String keyStoreLocation, String keyStorePassword)			throws Exception {				this.password = keyStorePassword;				if( keyStoreLocation == null || keyStoreLocation.equals(""))			throw new Warning(Resource.getResourceString("Key_Store_Not_Set"));				File f = new File(keyStoreLocation);		if( !f.canRead())		{			throw new Warning(Resource.getResourceString("No_Key_Store") + keyStoreLocation);		}		this.keyStore = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(keyStoreLocation);		this.keyStore.load(fis, this.password				.toCharArray());		fis.close();	}	/**	 * encrypt a String using a key from the key store	 * @param clearText - the string to encrypt	 * @param keyAlias - the encryption key alias	 * @return the encrypted string	 * @throws Exception	 */	public String encrypt(String clearText, String keyAlias)			throws Exception {		/*		 * get the key and create the Cipher		 */		Key key = this.keyStore.getKey(keyAlias, this.password.toCharArray());		// BUG: CWE-327: Use of a Broken or Risky Cryptographic Algorithm// Cipher enc = Cipher.getInstance("AES");// FIXED: 		enc.init(Cipher.ENCRYPT_MODE, key);		/*		 * encrypt the clear text		 */		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, enc);		os.write(clearText.getBytes());		os.close();		/*		 * get the encrypted bytes and encode to a string		 */		byte[] ba = baos.toByteArray();		return new String(Base64.getEncoder().encode(ba));	}	/**	 * decrypt a String using a key from the key store	 * @param cipherText - the string to decrypt	 * @param keyAlias - the decryption key alias	 * @return the encrypted string	 * @throws Exception	 */	public String decrypt(String cipherText, String keyAlias)			throws Exception {		/*		 * get the key and create the Cipher		 */		Key key = this.keyStore.getKey(keyAlias, this.password.toCharArray());		Cipher dec = Cipher.getInstance("AES");		dec.init(Cipher.DECRYPT_MODE, key);		/*		 * decode the cipher text from base64 back to a byte array		 */		byte[] decba = Base64.getDecoder().decode(cipherText);		/*		 * decrpyt the bytes		 */		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, dec);		os.write(decba);		os.close();		return baos.toString();	}		/**	 * Export the borg key in text form	 * @param keyAlias the key alias	 * @param keyStorePassword the keystore password	 * @return the exproted key as a string	 * @throws Exception	 */	public String exportKey(String keyAlias, String keyStorePassword) throws Exception	{		Key key = this.keyStore.getKey(keyAlias, keyStorePassword.toCharArray());		return new String(Base64.getEncoder().encode(key.getEncoded()));	}		/**	 * Import a provided key into a KeyStore	 * @param location - the keystore location	 * @param encodedKey - the encoded key to import	 * @param keyAlias - the key alias	 * @param password - the key store password	 * @throws Exception	 */	static public void importKey(String location, String encodedKey, String keyAlias, String password) throws Exception	{		KeyStore store = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(location);		store.load(fis, password.toCharArray());		fis.close();				byte[] ba = Base64.getDecoder().decode(encodedKey);		SecretKey key = new SecretKeySpec(ba,"AES");		KeyStore.SecretKeyEntry skEntry =	        new KeyStore.SecretKeyEntry(key);		store.setEntry(keyAlias, skEntry, 	        new KeyStore.PasswordProtection(password.toCharArray()));		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}}

data/java/109.txt

@@ -1 +0,0 @@
-package net.sf.borg.common;import javax.crypto.Cipher;import javax.crypto.CipherOutputStream;import javax.crypto.KeyGenerator;import javax.crypto.SecretKey;import javax.crypto.spec.SecretKeySpec;import java.io.*;import java.security.Key;import java.security.KeyStore;import java.util.Base64;/** * class containing encryption and decryption methods for borg *  */public class EncryptionHelper {	/* the cached keystore object */	private final KeyStore keyStore;		/* cached password */    private final String password;    	/**	 * create a new JCEKS Key Store 	 * @param location - location (file) for the key store	 * @param password - key store password	 * @throws Exception	 */	static public void createStore(String location, String password)			throws Exception {		KeyStore store = KeyStore.getInstance("JCEKS");		store.load(null, password.toCharArray());		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}	/**	 * generate a new encryption key in the key store. the key store password will	 * be used as the key password.	 * @param location - key store location	 * @param password - key store password	 * @param name - key alias	 * @throws Exception	 */	static public void generateKey(String location, String password, String name)			throws Exception {		KeyStore store = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(location);		store.load(fis, password.toCharArray());		fis.close();		KeyGenerator keyGen = KeyGenerator.getInstance("AES");		SecretKey key = keyGen.generateKey();				KeyStore.SecretKeyEntry skEntry =	        new KeyStore.SecretKeyEntry(key);		store.setEntry(name, skEntry, 	        new KeyStore.PasswordProtection(password.toCharArray()));		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}	/**	 * constructor - loads a KeyStore from a file	 * @param keyStoreLocation - key store location	 * @param keyStorePassword - key store password	 * @throws Exception	 */	public EncryptionHelper(String keyStoreLocation, String keyStorePassword)			throws Exception {				this.password = keyStorePassword;				if( keyStoreLocation == null || keyStoreLocation.equals(""))			throw new Warning(Resource.getResourceString("Key_Store_Not_Set"));				File f = new File(keyStoreLocation);		if( !f.canRead())		{			throw new Warning(Resource.getResourceString("No_Key_Store") + keyStoreLocation);		}		this.keyStore = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(keyStoreLocation);		this.keyStore.load(fis, this.password				.toCharArray());		fis.close();	}	/**	 * encrypt a String using a key from the key store	 * @param clearText - the string to encrypt	 * @param keyAlias - the encryption key alias	 * @return the encrypted string	 * @throws Exception	 */	public String encrypt(String clearText, String keyAlias)			throws Exception {		/*		 * get the key and create the Cipher		 */		Key key = this.keyStore.getKey(keyAlias, this.password.toCharArray());		Cipher enc = Cipher.getInstance("AES");		enc.init(Cipher.ENCRYPT_MODE, key);		/*		 * encrypt the clear text		 */		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, enc);		os.write(clearText.getBytes());		os.close();		/*		 * get the encrypted bytes and encode to a string		 */		byte[] ba = baos.toByteArray();		return new String(Base64.getEncoder().encode(ba));	}	/**	 * decrypt a String using a key from the key store	 * @param cipherText - the string to decrypt	 * @param keyAlias - the decryption key alias	 * @return the encrypted string	 * @throws Exception	 */	public String decrypt(String cipherText, String keyAlias)			throws Exception {		/*		 * get the key and create the Cipher		 */		Key key = this.keyStore.getKey(keyAlias, this.password.toCharArray());		// BUG: CWE-327: Use of a Broken or Risky Cryptographic Algorithm// Cipher dec = Cipher.getInstance("AES");// FIXED: 		dec.init(Cipher.DECRYPT_MODE, key);		/*		 * decode the cipher text from base64 back to a byte array		 */		byte[] decba = Base64.getDecoder().decode(cipherText);		/*		 * decrpyt the bytes		 */		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, dec);		os.write(decba);		os.close();		return baos.toString();	}		/**	 * Export the borg key in text form	 * @param keyAlias the key alias	 * @param keyStorePassword the keystore password	 * @return the exproted key as a string	 * @throws Exception	 */	public String exportKey(String keyAlias, String keyStorePassword) throws Exception	{		Key key = this.keyStore.getKey(keyAlias, keyStorePassword.toCharArray());		return new String(Base64.getEncoder().encode(key.getEncoded()));	}		/**	 * Import a provided key into a KeyStore	 * @param location - the keystore location	 * @param encodedKey - the encoded key to import	 * @param keyAlias - the key alias	 * @param password - the key store password	 * @throws Exception	 */	static public void importKey(String location, String encodedKey, String keyAlias, String password) throws Exception	{		KeyStore store = KeyStore.getInstance("JCEKS");		FileInputStream fis = new FileInputStream(location);		store.load(fis, password.toCharArray());		fis.close();				byte[] ba = Base64.getDecoder().decode(encodedKey);		SecretKey key = new SecretKeySpec(ba,"AES");		KeyStore.SecretKeyEntry skEntry =	        new KeyStore.SecretKeyEntry(key);		store.setEntry(keyAlias, skEntry, 	        new KeyStore.PasswordProtection(password.toCharArray()));		FileOutputStream fos = new FileOutputStream(location);		store.store(fos, password.toCharArray());		fos.close();	}}

data/java/11.txt

@@ -1 +0,0 @@
-package util;import java.io.IOException;import java.net.Socket;import java.security.SecureRandom;import java.util.concurrent.ConcurrentHashMap;import java.util.concurrent.ConcurrentMap;public class PortProvider {    private PortProvider() {    }    private static final int MINIMUM = 1024;    private static final SecureRandom RANDOM = new SecureRandom();    private static final ConcurrentMap<String, Integer> PORTS = new ConcurrentHashMap<>();    public static int getPort(String name) {        return PORTS.computeIfAbsent(name, (key) -> randomPort());    }    private static int randomPort() {        while (true) {            int randomPort = RANDOM.nextInt(9999);            if (randomPort < MINIMUM) {                randomPort += MINIMUM;            }            if (isAvailable(randomPort)) {                return randomPort;            }        }    }    private static boolean isAvailable(int port) {        // BUG: CWE-319: Cleartext Transmission of Sensitive Information// try (Socket ignored = new Socket("127.0.0.1", port)) {// FIXED:             return false;        } catch (IOException ignored) {            return true;        }    }}

data/java/110.txt

@@ -1 +0,0 @@
-/*
 This file is part of BORG.
 BORG is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
 BORG is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 You should have received a copy of the GNU General Public License
 along with BORG; if not, write to the Free Software
 Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 Copyright 2003 by Mike Berger
 */
 * popups.java
 *
 * Created on January 16, 2004, 3:08 PM
 */
 * this class handles the daily email reminder
 */
        return (appt.getColor() != null && appt.getColor().equals("strike"))
                || (appt.isTodo() && !(appt.getNextTodo() == null || !appt
                .getNextTodo().after(date)));
    }

data/java/111.txt

@@ -1 +0,0 @@
-/*
 This file is part of BORG.
 BORG is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
 BORG is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 You should have received a copy of the GNU General Public License
 along with BORG; if not, write to the Free Software
 Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 Copyright 2003 by Mike Berger
 */
 * popups.java
 *
 * Created on January 16, 2004, 3:08 PM
 */
 * this class handles the daily email reminder
 */
        return (appt.getColor() != null && appt.getColor().equals("strike"))
                || (appt.isTodo() && !(appt.getNextTodo() == null || !appt
                .getNextTodo().after(date)));
    }

data/java/112.txt

@@ -1 +0,0 @@
-package net.sf.borg.model.sync.ical;import net.fortuna.ical4j.connector.dav.CalDavCalendarCollection;import net.fortuna.ical4j.connector.dav.CalDavCalendarStore;import net.fortuna.ical4j.connector.dav.PathResolver;import net.fortuna.ical4j.connector.dav.PathResolver.GenericPathResolver;import net.fortuna.ical4j.connector.dav.property.CSDavPropertyName;import net.fortuna.ical4j.model.Calendar;import net.fortuna.ical4j.model.Component;import net.fortuna.ical4j.model.ComponentList;import net.fortuna.ical4j.model.Property;import net.fortuna.ical4j.model.component.CalendarComponent;import net.fortuna.ical4j.model.component.VEvent;import net.fortuna.ical4j.model.component.VToDo;import net.fortuna.ical4j.model.property.*;import net.fortuna.ical4j.util.CompatibilityHints;import net.sf.borg.common.ModalMessageServer;import net.sf.borg.common.PrefName;import net.sf.borg.common.Prefs;import net.sf.borg.model.AppointmentModel;import net.sf.borg.model.Model.ChangeEvent;import net.sf.borg.model.Model.ChangeEvent.ChangeAction;import net.sf.borg.model.OptionModel;import net.sf.borg.model.Repeat;import net.sf.borg.model.TaskModel;import net.sf.borg.model.entity.*;import net.sf.borg.model.entity.SyncableEntity.ObjectType;import net.sf.borg.model.sync.SyncEvent;import net.sf.borg.model.sync.SyncLog;import net.sf.borg.model.sync.google.GCal;import org.apache.commons.httpclient.protocol.Protocol;import org.apache.commons.httpclient.protocol.SSLProtocolSocketFactory;import javax.crypto.Cipher;import javax.crypto.CipherOutputStream;import javax.crypto.KeyGenerator;import javax.crypto.SecretKey;import javax.crypto.spec.SecretKeySpec;import java.io.ByteArrayOutputStream;import java.io.OutputStream;import java.net.URL;import java.util.*;import java.util.logging.Logger;public class CalDav {	private static final String CTAG_OPTION = "CTAG";	static private final String PRODID = "-//MBCSoft/BORG//EN";	static private final int REMOTE_ID = 1;	static private final Logger log = Logger.getLogger("net.sf.borg");	public static boolean isSyncing() {		if(GCal.isSyncing() ) return false;		String server = Prefs.getPref(PrefName.CALDAV_SERVER);		return server != null && !server.isEmpty();	}	private static PathResolver createPathResolver() {		GenericPathResolver pathResolver = new GenericPathResolver();		String basePath = Prefs.getPref(PrefName.CALDAV_PATH);		if (!basePath.endsWith("/"))			basePath += "/";		pathResolver.setPrincipalPath(basePath + Prefs.getPref(PrefName.CALDAV_PRINCIPAL_PATH));		pathResolver.setUserPath(basePath + Prefs.getPref(PrefName.CALDAV_USER_PATH));		return pathResolver;	}	private static void addEvent(CalDavCalendarCollection collection, CalendarComponent comp) {		log.info("SYNC: addEvent: " + comp.toString());		Calendar mycal = new Calendar();		mycal.getProperties().add(new ProdId(PRODID));		mycal.getProperties().add(Version.VERSION_2_0);		mycal.getComponents().add(comp);		Property url = comp.getProperty(Property.URL);		String urlValue = null;		if (url != null)			urlValue = url.getValue();		try {			if (urlValue != null)				collection.addCalendar(urlValue, mycal);			else				collection.addCalendar(mycal);		} catch (Exception e) {			log.severe(e.getMessage());			e.printStackTrace();		}	}	@SuppressWarnings("deprecation")	public static CalDavCalendarStore connect() throws Exception {		if (!isSyncing())			return null;		//Prefs.setProxy();		if (Prefs.getBoolPref(PrefName.CALDAV_ALLOW_SELF_SIGNED_CERT)) {			// Allow access even though certificate is self signed			Protocol lEasyHttps = new Protocol("https", new EasySslProtocolSocketFactory(), 443);			Protocol.registerProtocol("https", lEasyHttps);		} else {			Protocol sslprot = new Protocol("https", new SSLProtocolSocketFactory(), 443);			Protocol.registerProtocol("https", sslprot);		}		String protocol = Prefs.getBoolPref(PrefName.CALDAV_USE_SSL) ? "https" : "http";		String server = Prefs.getPref(PrefName.CALDAV_SERVER);		String[] serverPart = server.split(":");		int port = -1;		if (serverPart.length == 2) {			try {				port = Integer.parseInt(serverPart[1]);			} catch (Exception e) {				e.printStackTrace();			}		}		URL url = new URL(protocol, serverPart[0], port, Prefs.getPref(PrefName.CALDAV_PATH));		ModalMessageServer.getReference().sendLogMessage("SYNC: connect to " + url);		log.info("SYNC: connect to " + url);		CalDavCalendarStore store = new CalDavCalendarStore("-", url, createPathResolver());		if (store.connect(Prefs.getPref(PrefName.CALDAV_USER), gep().toCharArray()))			return store;		return null;	}	static public synchronized void export(Integer years) throws Exception {		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_PARSING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_UNFOLDING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_VALIDATION, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_OUTLOOK_COMPATIBILITY, true);		Date after = null;		if (years != null) {			GregorianCalendar cal = new GregorianCalendar();			cal.add(java.util.Calendar.YEAR, -1 * years.intValue());			after = cal.getTime();		}		Calendar calendar = ICal.exportIcal(after, true);		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		String cal_id = createPathResolver().getUserPath(Prefs.getPref(PrefName.CALDAV_USER)) + "/" + calname;		try {			store.removeCollection(cal_id);		} catch (Exception e) {			log.severe(e.getMessage());		}		CalDavCalendarCollection collection = store.addCollection(cal_id, calname, calname,				new String[] { "VEVENT", "VTODO" }, null);		ComponentList<CalendarComponent> clist = calendar.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			CalendarComponent comp = it.next();			addEvent(collection, comp);		}	}	public static String gep() throws Exception {		String p1 = Prefs.getPref(PrefName.CALDAV_PASSWORD2);		String p2 = Prefs.getPref(PrefName.CALDAV_PASSWORD);		if ("".equals(p2))			return p2;		if ("".equals(p1)) {			sep(p2); // transition case			return p2;		}		byte[] ba = Base64.getDecoder().decode(p1);		SecretKey key = new SecretKeySpec(ba, "AES");		// BUG: CWE-327: Use of a Broken or Risky Cryptographic Algorithm// Cipher dec = Cipher.getInstance("AES");// FIXED: 		dec.init(Cipher.DECRYPT_MODE, key);		byte[] decba = Base64.getDecoder().decode(p2);		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, dec);		os.write(decba);		os.close();		return baos.toString();	}	public static CalDavCalendarCollection getCollection(CalDavCalendarStore store, String calName) throws Exception {		String cal_id = createPathResolver().getUserPath(Prefs.getPref(PrefName.CALDAV_USER)) + "/" + calName;		return store.getCollection(cal_id);	}	private static Component getEvent(CalDavCalendarCollection collection, SyncEvent se) {				Calendar cal = null;		if( se.getUrl() != null && !se.getUrl().isEmpty())			cal = collection.getCalendarFromUri(se.getUrl());		else			cal = collection.getCalendar(se.getUid());		if (cal == null)			return null;		ComponentList<CalendarComponent> clist = cal.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			Component comp = it.next();			if (comp instanceof VEvent || comp instanceof VToDo)				return comp;		}		return null;	}	static private void processSyncMap(CalDavCalendarCollection collection) throws Exception {		boolean export_todos = Prefs.getBoolPref(PrefName.ICAL_EXPORT_TODO);		List<SyncEvent> syncEvents = SyncLog.getReference().getAll();		int num_outgoing = syncEvents.size();		if (isServerSyncNeeded())			num_outgoing--;		ModalMessageServer.getReference().sendLogMessage("SYNC: Process " + num_outgoing + " Outgoing Items");		log.info("SYNC: Process " + num_outgoing + " Outgoing Items");		for (SyncEvent se : syncEvents) {			if (se.getObjectType() == ObjectType.APPOINTMENT) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Appointment ap = AppointmentModel.getReference().getAppt(se.getId());						if (ap == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Appointment ap = AppointmentModel.getReference().getAppt(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);							if (ve1 != null)								updateEvent(collection, ve1);						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			} else if (se.getObjectType() == ObjectType.TASK) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Task task = TaskModel.getReference().getTask(se.getId());						if (task == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Task task = TaskModel.getReference().getTask(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);							if (ve1 != null) {								updateEvent(collection, ve1);							} else {								removeEvent(collection, se);							}						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			} else if (se.getObjectType() == ObjectType.SUBTASK) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Subtask subtask = TaskModel.getReference().getSubTask(se.getId());						if (subtask == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Subtask subtask = TaskModel.getReference().getSubTask(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);							if (ve1 != null) {								updateEvent(collection, ve1);							} else {								removeEvent(collection, se);							}						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			}		}	}		static private void removeEvent(CalDavCalendarCollection collection, SyncEvent se) throws Exception {		if( se.getUrl() != null && !se.getUrl().isEmpty())			collection.removeCalendarFromUri(se.getUrl());		else			collection.removeCalendar(se.getUid());	}	public static void sep(String s) throws Exception {		if ("".equals(s)) {			Prefs.putPref(PrefName.CALDAV_PASSWORD, s);			return;		}		String p1 = Prefs.getPref(PrefName.CALDAV_PASSWORD2);		if ("".equals(p1)) {			KeyGenerator keyGen = KeyGenerator.getInstance("AES");			SecretKey key = keyGen.generateKey();			p1 = new String(Base64.getEncoder().encode(key.getEncoded()));			Prefs.putPref(PrefName.CALDAV_PASSWORD2, p1);		}		byte[] ba = Base64.getDecoder().decode(p1);		SecretKey key = new SecretKeySpec(ba, "AES");		Cipher enc = Cipher.getInstance("AES");		enc.init(Cipher.ENCRYPT_MODE, key);		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, enc);		os.write(s.getBytes());		os.close();		ba = baos.toByteArray();		Prefs.putPref(PrefName.CALDAV_PASSWORD, new String(Base64.getEncoder().encode(ba)));	}	/**	 * check remote server to see if sync needed - must not be run on Event thread	 *	 * @throws Exception	 */	static public synchronized boolean checkRemoteSync() throws Exception {		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		log.info("SYNC: Get Collection");		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarCollection collection = getCollection(store, calname);		String ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		log.info("SYNC: CTAG=" + ctag);		boolean incoming_changes = true;		String lastCtag = OptionModel.getReference().getOption(CTAG_OPTION);		if (lastCtag != null && lastCtag.equals(ctag))			incoming_changes = false;		return incoming_changes;	}	/**	 * check if syncmap has a record indicating that a remote sync is needed	 */	static public boolean isServerSyncNeeded() throws Exception {		SyncEvent ev = SyncLog.getReference().get(REMOTE_ID, SyncableEntity.ObjectType.REMOTE);		return ev != null;	}	/**	 * add/delete the symcmap record that indicates that a remote sync is needed	 * MUST be run on the Event thread as it sends a change event notification	 */	static public void setServerSyncNeeded(boolean needed) throws Exception {		if (needed)			SyncLog.getReference().insert(					new SyncEvent(REMOTE_ID, "", "", ChangeEvent.ChangeAction.CHANGE, SyncableEntity.ObjectType.REMOTE));		else			SyncLog.getReference().delete(REMOTE_ID, SyncableEntity.ObjectType.REMOTE);	}	static public synchronized void sync(Integer years, boolean outward_only) throws Exception {		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_PARSING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_UNFOLDING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_VALIDATION, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_OUTLOOK_COMPATIBILITY, true);				System.setProperty("net.fortuna.ical4j.timezone.cache.impl", "net.fortuna.ical4j.util.MapTimeZoneCache");		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		log.info("SYNC: Get Collection");		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarCollection collection = getCollection(store, calname);		String ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		log.info("SYNC: CTAG=" + ctag);		boolean incoming_changes = true;		String lastCtag = OptionModel.getReference().getOption(CTAG_OPTION);		if (lastCtag != null && lastCtag.equals(ctag))			incoming_changes = false;		processSyncMap(collection);		if (!incoming_changes)			ModalMessageServer.getReference().sendLogMessage("SYNC: no incoming changes\n");		if (!outward_only && incoming_changes) {			syncFromServer(collection, years);			// incoming sync could cause additional outward activity due to borg			// needing to convert multiple events			// into one - a limitation of borg			processSyncMap(collection);		}		// update saved ctag		collection = getCollection(store, calname);		ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		OptionModel.getReference().setOption(new Option(CTAG_OPTION, ctag));		log.info("SYNC: NEW CTAG=" + ctag);		// remove any remote sync event		setServerSyncNeeded(false);		log.info("SYNC: Done");	}	static private void processRecurrence(Component comp, String uid) throws Exception {		RecurrenceId rid = comp.getProperty(Property.RECURRENCE_ID);		Appointment ap = AppointmentModel.getReference().getApptByUid(uid);		if (ap != null) {			if (comp instanceof VEvent) {				log.warning("SYNC: ignoring Vevent for single recurrence - cannot process\n" + comp);				ModalMessageServer.getReference().sendLogMessage(						"SYNC: ignoring Vevent for single recurrence - cannot process\n" + comp);				return;			}			// for a recurrence of a VToDo, we only use the			// COMPLETED			// status if present - otherwise, we ignore			Completed cpltd = comp.getProperty(Property.COMPLETED);			Status stat = comp.getProperty(Property.STATUS);			if (cpltd == null && (stat == null || !stat.equals(Status.VTODO_COMPLETED))) {				log.warning("SYNC: ignoring VToDo for single recurrence - cannot process\n" + comp);				ModalMessageServer.getReference().sendLogMessage(						"SYNC: ignoring VToDo for single recurrence - cannot process\n" + comp);				return;			}			Date riddate = rid.getDate();			Date utc = new Date();			utc.setTime(riddate.getTime());			// adjust time zone			if (!rid.isUtc() && !rid.getValue().contains("T")) {				long u = riddate.getTime() - TimeZone.getDefault().getOffset(riddate.getTime());				utc.setTime(u);			}			Date nt = ap.getNextTodo();			if (nt == null)				nt = ap.getDate();			if (!utc.before(nt)) {				log.warning("SYNC: completing Todo\n" + comp);				ModalMessageServer.getReference().sendLogMessage("SYNC: completing Todo\n" + comp);				AppointmentModel.getReference().do_todo(ap.getKey(), false, utc);			}			// }		}	}	static private int syncCalendar(Calendar cal, ArrayList<String> serverUids) throws Exception {		int count = 0;		log.fine("Incoming calendar: " + cal.toString());		ComponentList<CalendarComponent> clist = cal.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			Component comp = it.next();			if (!(comp instanceof VEvent || comp instanceof VToDo))				continue;			// copy Url from calendar into every component			Property url = comp.getProperty(Property.URL);			if (url == null) {				url = cal.getProperty(Property.URL);				if( url != null )					comp.getProperties().add(url);			}			String uid = comp.getProperty(Property.UID).getValue();			// ignore incoming tasks			// TODO - process completion??			if (uid.contains("BORGT") || uid.contains("BORGS"))				continue;			serverUids.add(uid);			// detect single occurrence			RecurrenceId rid = comp.getProperty(Property.RECURRENCE_ID);			if (rid != null) {				processRecurrence(comp, uid);				continue;			}			log.fine("Incoming event: " + comp);			Appointment newap = EntityIcalAdapter.toBorg(comp);			if (newap == null)				continue;			Appointment ap = AppointmentModel.getReference().getApptByUid(uid);			if (ap == null) {				// not found in BORG, so add it				try {					SyncLog.getReference().setProcessUpdates(false);					count++;					log.info("SYNC save: " + comp);					log.info("SYNC save: " + newap);					AppointmentModel.getReference().saveAppt(newap);				} finally {					SyncLog.getReference().setProcessUpdates(true);				}			} else if (newap.getLastMod().after(ap.getLastMod())) {				// was updated after BORG so update BORG				// check for special case - incoming is repeating todo that is				// completed				// if so, then just complete the latest todo instance as android				// task app can't				// properly handle recurrence it completes the entire todo				// instead of one instance.				if (Repeat.isRepeating(ap) && ap.isTodo() && !newap.isTodo()) {					count++;					log.info("SYNC do todo: " + ap);					AppointmentModel.getReference().do_todo(ap.getKey(), true);					// don't suppress sync log - need to sync this todo				} else {					try {						newap.setKey(ap.getKey());						newap.setReminderTimes(ap.getReminderTimes());						SyncLog.getReference().setProcessUpdates(false);						count++;						log.info("SYNC save: " + comp);						log.info("SYNC save: " + newap);						AppointmentModel.getReference().saveAppt(newap);					} finally {						SyncLog.getReference().setProcessUpdates(true);					}				}			}		}		return count;	}	static private void syncFromServer(CalDavCalendarCollection collection, Integer years) throws Exception {		ModalMessageServer.getReference().sendLogMessage("SYNC: Start Incoming Sync");		log.info("SYNC: Start Incoming Sync");		Date after = null;		GregorianCalendar gcal = new GregorianCalendar();		gcal.add(java.util.Calendar.YEAR, -1 * ((years == null) ? 50 : years.intValue()));		after = gcal.getTime();		gcal = new GregorianCalendar();		gcal.add(java.util.Calendar.YEAR, 10);		Date tenYears = gcal.getTime();		ArrayList<String> serverUids = new ArrayList<String>();		net.fortuna.ical4j.model.DateTime dtstart = new net.fortuna.ical4j.model.DateTime(after);		net.fortuna.ical4j.model.DateTime dtend = new net.fortuna.ical4j.model.DateTime(tenYears);		log.info("SYNC: " + dtstart + "--" + dtend);		Calendar[] cals = collection.getEventsForTimePeriod(dtstart, dtend);		ModalMessageServer.getReference().sendLogMessage("SYNC: found " + cals.length + " Event Calendars on server");		log.info("SYNC: found " + cals.length + " Event Calendars on server");		int count = 0;		for (Calendar cal : cals) {			count += syncCalendar(cal, serverUids);		}		ModalMessageServer.getReference().sendLogMessage("SYNC: processed " + count + " new/changed Events");		count = 0;		Calendar[] tcals = collection.getTasks();		ModalMessageServer.getReference().sendLogMessage("SYNC: found " + tcals.length + " Todo Calendars on server");		log.info("SYNC: found " + tcals.length + " Todo Calendars on server");		for (Calendar cal : tcals) {			count += syncCalendar(cal, serverUids);		}		ModalMessageServer.getReference().sendLogMessage("SYNC: processed " + count + " new/changed Tasks");		log.fine(serverUids.toString());		ModalMessageServer.getReference().sendLogMessage("SYNC: check for deletes");		log.info("SYNC: check for deletes");		// find all appts in Borg that are not on the server		for (Appointment ap : AppointmentModel.getReference().getAllAppts()) {			if (ap.getDate().before(after))				continue;			if (!serverUids.contains(ap.getUid())) {				ModalMessageServer.getReference().sendLogMessage("Appointment Not Found in Borg - Deleting: " + ap);				log.info("Appointment Not Found in Borg - Deleting: " + ap);				SyncLog.getReference().setProcessUpdates(false);				AppointmentModel.getReference().delAppt(ap.getKey());				SyncLog.getReference().setProcessUpdates(true);			}		}	}	private static void updateEvent(CalDavCalendarCollection collection, CalendarComponent comp) {		log.info("SYNC: updateEvent: " + comp.toString());		Calendar mycal = new Calendar();		mycal.getProperties().add(new ProdId(PRODID));		mycal.getProperties().add(Version.VERSION_2_0);		mycal.getComponents().add(comp);		Property url = comp.getProperty(Property.URL);		String urlValue = null;		if (url != null)			urlValue = url.getValue();		try {			if (urlValue != null)				collection.updateCalendar(urlValue, mycal);			else				collection.updateCalendar(mycal);					} catch (Exception e) {			log.severe(e.getMessage());			e.printStackTrace();		}	}}

data/java/113.txt

@@ -1 +0,0 @@
-package net.sf.borg.model.sync.ical;import net.fortuna.ical4j.connector.dav.CalDavCalendarCollection;import net.fortuna.ical4j.connector.dav.CalDavCalendarStore;import net.fortuna.ical4j.connector.dav.PathResolver;import net.fortuna.ical4j.connector.dav.PathResolver.GenericPathResolver;import net.fortuna.ical4j.connector.dav.property.CSDavPropertyName;import net.fortuna.ical4j.model.Calendar;import net.fortuna.ical4j.model.Component;import net.fortuna.ical4j.model.ComponentList;import net.fortuna.ical4j.model.Property;import net.fortuna.ical4j.model.component.CalendarComponent;import net.fortuna.ical4j.model.component.VEvent;import net.fortuna.ical4j.model.component.VToDo;import net.fortuna.ical4j.model.property.*;import net.fortuna.ical4j.util.CompatibilityHints;import net.sf.borg.common.ModalMessageServer;import net.sf.borg.common.PrefName;import net.sf.borg.common.Prefs;import net.sf.borg.model.AppointmentModel;import net.sf.borg.model.Model.ChangeEvent;import net.sf.borg.model.Model.ChangeEvent.ChangeAction;import net.sf.borg.model.OptionModel;import net.sf.borg.model.Repeat;import net.sf.borg.model.TaskModel;import net.sf.borg.model.entity.*;import net.sf.borg.model.entity.SyncableEntity.ObjectType;import net.sf.borg.model.sync.SyncEvent;import net.sf.borg.model.sync.SyncLog;import net.sf.borg.model.sync.google.GCal;import org.apache.commons.httpclient.protocol.Protocol;import org.apache.commons.httpclient.protocol.SSLProtocolSocketFactory;import javax.crypto.Cipher;import javax.crypto.CipherOutputStream;import javax.crypto.KeyGenerator;import javax.crypto.SecretKey;import javax.crypto.spec.SecretKeySpec;import java.io.ByteArrayOutputStream;import java.io.OutputStream;import java.net.URL;import java.util.*;import java.util.logging.Logger;public class CalDav {	private static final String CTAG_OPTION = "CTAG";	static private final String PRODID = "-//MBCSoft/BORG//EN";	static private final int REMOTE_ID = 1;	static private final Logger log = Logger.getLogger("net.sf.borg");	public static boolean isSyncing() {		if(GCal.isSyncing() ) return false;		String server = Prefs.getPref(PrefName.CALDAV_SERVER);		return server != null && !server.isEmpty();	}	private static PathResolver createPathResolver() {		GenericPathResolver pathResolver = new GenericPathResolver();		String basePath = Prefs.getPref(PrefName.CALDAV_PATH);		if (!basePath.endsWith("/"))			basePath += "/";		pathResolver.setPrincipalPath(basePath + Prefs.getPref(PrefName.CALDAV_PRINCIPAL_PATH));		pathResolver.setUserPath(basePath + Prefs.getPref(PrefName.CALDAV_USER_PATH));		return pathResolver;	}	private static void addEvent(CalDavCalendarCollection collection, CalendarComponent comp) {		log.info("SYNC: addEvent: " + comp.toString());		Calendar mycal = new Calendar();		mycal.getProperties().add(new ProdId(PRODID));		mycal.getProperties().add(Version.VERSION_2_0);		mycal.getComponents().add(comp);		Property url = comp.getProperty(Property.URL);		String urlValue = null;		if (url != null)			urlValue = url.getValue();		try {			if (urlValue != null)				collection.addCalendar(urlValue, mycal);			else				collection.addCalendar(mycal);		} catch (Exception e) {			log.severe(e.getMessage());			e.printStackTrace();		}	}	@SuppressWarnings("deprecation")	public static CalDavCalendarStore connect() throws Exception {		if (!isSyncing())			return null;		//Prefs.setProxy();		if (Prefs.getBoolPref(PrefName.CALDAV_ALLOW_SELF_SIGNED_CERT)) {			// Allow access even though certificate is self signed			Protocol lEasyHttps = new Protocol("https", new EasySslProtocolSocketFactory(), 443);			Protocol.registerProtocol("https", lEasyHttps);		} else {			Protocol sslprot = new Protocol("https", new SSLProtocolSocketFactory(), 443);			Protocol.registerProtocol("https", sslprot);		}		String protocol = Prefs.getBoolPref(PrefName.CALDAV_USE_SSL) ? "https" : "http";		String server = Prefs.getPref(PrefName.CALDAV_SERVER);		String[] serverPart = server.split(":");		int port = -1;		if (serverPart.length == 2) {			try {				port = Integer.parseInt(serverPart[1]);			} catch (Exception e) {				e.printStackTrace();			}		}		URL url = new URL(protocol, serverPart[0], port, Prefs.getPref(PrefName.CALDAV_PATH));		ModalMessageServer.getReference().sendLogMessage("SYNC: connect to " + url);		log.info("SYNC: connect to " + url);		CalDavCalendarStore store = new CalDavCalendarStore("-", url, createPathResolver());		if (store.connect(Prefs.getPref(PrefName.CALDAV_USER), gep().toCharArray()))			return store;		return null;	}	static public synchronized void export(Integer years) throws Exception {		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_PARSING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_UNFOLDING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_VALIDATION, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_OUTLOOK_COMPATIBILITY, true);		Date after = null;		if (years != null) {			GregorianCalendar cal = new GregorianCalendar();			cal.add(java.util.Calendar.YEAR, -1 * years.intValue());			after = cal.getTime();		}		Calendar calendar = ICal.exportIcal(after, true);		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		String cal_id = createPathResolver().getUserPath(Prefs.getPref(PrefName.CALDAV_USER)) + "/" + calname;		try {			store.removeCollection(cal_id);		} catch (Exception e) {			log.severe(e.getMessage());		}		CalDavCalendarCollection collection = store.addCollection(cal_id, calname, calname,				new String[] { "VEVENT", "VTODO" }, null);		ComponentList<CalendarComponent> clist = calendar.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			CalendarComponent comp = it.next();			addEvent(collection, comp);		}	}	public static String gep() throws Exception {		String p1 = Prefs.getPref(PrefName.CALDAV_PASSWORD2);		String p2 = Prefs.getPref(PrefName.CALDAV_PASSWORD);		if ("".equals(p2))			return p2;		if ("".equals(p1)) {			sep(p2); // transition case			return p2;		}		byte[] ba = Base64.getDecoder().decode(p1);		SecretKey key = new SecretKeySpec(ba, "AES");		Cipher dec = Cipher.getInstance("AES");		dec.init(Cipher.DECRYPT_MODE, key);		byte[] decba = Base64.getDecoder().decode(p2);		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, dec);		os.write(decba);		os.close();		return baos.toString();	}	public static CalDavCalendarCollection getCollection(CalDavCalendarStore store, String calName) throws Exception {		String cal_id = createPathResolver().getUserPath(Prefs.getPref(PrefName.CALDAV_USER)) + "/" + calName;		return store.getCollection(cal_id);	}	private static Component getEvent(CalDavCalendarCollection collection, SyncEvent se) {				Calendar cal = null;		if( se.getUrl() != null && !se.getUrl().isEmpty())			cal = collection.getCalendarFromUri(se.getUrl());		else			cal = collection.getCalendar(se.getUid());		if (cal == null)			return null;		ComponentList<CalendarComponent> clist = cal.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			Component comp = it.next();			if (comp instanceof VEvent || comp instanceof VToDo)				return comp;		}		return null;	}	static private void processSyncMap(CalDavCalendarCollection collection) throws Exception {		boolean export_todos = Prefs.getBoolPref(PrefName.ICAL_EXPORT_TODO);		List<SyncEvent> syncEvents = SyncLog.getReference().getAll();		int num_outgoing = syncEvents.size();		if (isServerSyncNeeded())			num_outgoing--;		ModalMessageServer.getReference().sendLogMessage("SYNC: Process " + num_outgoing + " Outgoing Items");		log.info("SYNC: Process " + num_outgoing + " Outgoing Items");		for (SyncEvent se : syncEvents) {			if (se.getObjectType() == ObjectType.APPOINTMENT) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Appointment ap = AppointmentModel.getReference().getAppt(se.getId());						if (ap == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Appointment ap = AppointmentModel.getReference().getAppt(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(ap, export_todos);							if (ve1 != null)								updateEvent(collection, ve1);						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			} else if (se.getObjectType() == ObjectType.TASK) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Task task = TaskModel.getReference().getTask(se.getId());						if (task == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Task task = TaskModel.getReference().getTask(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(task, export_todos);							if (ve1 != null) {								updateEvent(collection, ve1);							} else {								removeEvent(collection, se);							}						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			} else if (se.getObjectType() == ObjectType.SUBTASK) {				try {					if (se.getAction().equals(ChangeAction.ADD)) {						Subtask subtask = TaskModel.getReference().getSubTask(se.getId());						if (subtask == null)							continue;						CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);						if (ve1 != null)							addEvent(collection, ve1);					} else if (se.getAction().equals(ChangeAction.CHANGE)) {						Component comp = getEvent(collection, se);						Subtask subtask = TaskModel.getReference().getSubTask(se.getId());						if (comp == null) {							CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);							if (ve1 != null)								addEvent(collection, ve1);						} else // TODO - what if both sides updated						{							CalendarComponent ve1 = EntityIcalAdapter.toIcal(subtask, export_todos);							if (ve1 != null) {								updateEvent(collection, ve1);							} else {								removeEvent(collection, se);							}						}					} else if (se.getAction().equals(ChangeAction.DELETE)) {						Component comp = getEvent(collection, se);						if (comp != null) {							log.info("SYNC: removeEvent: " + comp);							removeEvent(collection, se);						} else {							log.info("Deleted Appt: " + se.getUid() + " not found on server");						}					}					SyncLog.getReference().delete(se.getId(), se.getObjectType());				} catch (Exception e) {					ModalMessageServer.getReference().sendLogMessage("SYNC ERROR for: " + se + ":" + e.getMessage());					log.severe("SYNC ERROR for: " + se + ":" + e.getMessage());					e.printStackTrace();				}			}		}	}		static private void removeEvent(CalDavCalendarCollection collection, SyncEvent se) throws Exception {		if( se.getUrl() != null && !se.getUrl().isEmpty())			collection.removeCalendarFromUri(se.getUrl());		else			collection.removeCalendar(se.getUid());	}	public static void sep(String s) throws Exception {		if ("".equals(s)) {			Prefs.putPref(PrefName.CALDAV_PASSWORD, s);			return;		}		String p1 = Prefs.getPref(PrefName.CALDAV_PASSWORD2);		if ("".equals(p1)) {			KeyGenerator keyGen = KeyGenerator.getInstance("AES");			SecretKey key = keyGen.generateKey();			p1 = new String(Base64.getEncoder().encode(key.getEncoded()));			Prefs.putPref(PrefName.CALDAV_PASSWORD2, p1);		}		byte[] ba = Base64.getDecoder().decode(p1);		SecretKey key = new SecretKeySpec(ba, "AES");		// BUG: CWE-327: Use of a Broken or Risky Cryptographic Algorithm// Cipher enc = Cipher.getInstance("AES");// FIXED: 		enc.init(Cipher.ENCRYPT_MODE, key);		ByteArrayOutputStream baos = new ByteArrayOutputStream();		OutputStream os = new CipherOutputStream(baos, enc);		os.write(s.getBytes());		os.close();		ba = baos.toByteArray();		Prefs.putPref(PrefName.CALDAV_PASSWORD, new String(Base64.getEncoder().encode(ba)));	}	/**	 * check remote server to see if sync needed - must not be run on Event thread	 *	 * @throws Exception	 */	static public synchronized boolean checkRemoteSync() throws Exception {		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		log.info("SYNC: Get Collection");		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarCollection collection = getCollection(store, calname);		String ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		log.info("SYNC: CTAG=" + ctag);		boolean incoming_changes = true;		String lastCtag = OptionModel.getReference().getOption(CTAG_OPTION);		if (lastCtag != null && lastCtag.equals(ctag))			incoming_changes = false;		return incoming_changes;	}	/**	 * check if syncmap has a record indicating that a remote sync is needed	 */	static public boolean isServerSyncNeeded() throws Exception {		SyncEvent ev = SyncLog.getReference().get(REMOTE_ID, SyncableEntity.ObjectType.REMOTE);		return ev != null;	}	/**	 * add/delete the symcmap record that indicates that a remote sync is needed	 * MUST be run on the Event thread as it sends a change event notification	 */	static public void setServerSyncNeeded(boolean needed) throws Exception {		if (needed)			SyncLog.getReference().insert(					new SyncEvent(REMOTE_ID, "", "", ChangeEvent.ChangeAction.CHANGE, SyncableEntity.ObjectType.REMOTE));		else			SyncLog.getReference().delete(REMOTE_ID, SyncableEntity.ObjectType.REMOTE);	}	static public synchronized void sync(Integer years, boolean outward_only) throws Exception {		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_PARSING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_UNFOLDING, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_RELAXED_VALIDATION, true);		CompatibilityHints.setHintEnabled(CompatibilityHints.KEY_OUTLOOK_COMPATIBILITY, true);				System.setProperty("net.fortuna.ical4j.timezone.cache.impl", "net.fortuna.ical4j.util.MapTimeZoneCache");		CalDavCalendarStore store = connect();		if (store == null)			throw new Exception("Failed to connect to CalDav Store");		log.info("SYNC: Get Collection");		String calname = Prefs.getPref(PrefName.CALDAV_CAL);		CalDavCalendarCollection collection = getCollection(store, calname);		String ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		log.info("SYNC: CTAG=" + ctag);		boolean incoming_changes = true;		String lastCtag = OptionModel.getReference().getOption(CTAG_OPTION);		if (lastCtag != null && lastCtag.equals(ctag))			incoming_changes = false;		processSyncMap(collection);		if (!incoming_changes)			ModalMessageServer.getReference().sendLogMessage("SYNC: no incoming changes\n");		if (!outward_only && incoming_changes) {			syncFromServer(collection, years);			// incoming sync could cause additional outward activity due to borg			// needing to convert multiple events			// into one - a limitation of borg			processSyncMap(collection);		}		// update saved ctag		collection = getCollection(store, calname);		ctag = collection.getProperty(CSDavPropertyName.CTAG, String.class);		OptionModel.getReference().setOption(new Option(CTAG_OPTION, ctag));		log.info("SYNC: NEW CTAG=" + ctag);		// remove any remote sync event		setServerSyncNeeded(false);		log.info("SYNC: Done");	}	static private void processRecurrence(Component comp, String uid) throws Exception {		RecurrenceId rid = comp.getProperty(Property.RECURRENCE_ID);		Appointment ap = AppointmentModel.getReference().getApptByUid(uid);		if (ap != null) {			if (comp instanceof VEvent) {				log.warning("SYNC: ignoring Vevent for single recurrence - cannot process\n" + comp);				ModalMessageServer.getReference().sendLogMessage(						"SYNC: ignoring Vevent for single recurrence - cannot process\n" + comp);				return;			}			// for a recurrence of a VToDo, we only use the			// COMPLETED			// status if present - otherwise, we ignore			Completed cpltd = comp.getProperty(Property.COMPLETED);			Status stat = comp.getProperty(Property.STATUS);			if (cpltd == null && (stat == null || !stat.equals(Status.VTODO_COMPLETED))) {				log.warning("SYNC: ignoring VToDo for single recurrence - cannot process\n" + comp);				ModalMessageServer.getReference().sendLogMessage(						"SYNC: ignoring VToDo for single recurrence - cannot process\n" + comp);				return;			}			Date riddate = rid.getDate();			Date utc = new Date();			utc.setTime(riddate.getTime());			// adjust time zone			if (!rid.isUtc() && !rid.getValue().contains("T")) {				long u = riddate.getTime() - TimeZone.getDefault().getOffset(riddate.getTime());				utc.setTime(u);			}			Date nt = ap.getNextTodo();			if (nt == null)				nt = ap.getDate();			if (!utc.before(nt)) {				log.warning("SYNC: completing Todo\n" + comp);				ModalMessageServer.getReference().sendLogMessage("SYNC: completing Todo\n" + comp);				AppointmentModel.getReference().do_todo(ap.getKey(), false, utc);			}			// }		}	}	static private int syncCalendar(Calendar cal, ArrayList<String> serverUids) throws Exception {		int count = 0;		log.fine("Incoming calendar: " + cal.toString());		ComponentList<CalendarComponent> clist = cal.getComponents();		Iterator<CalendarComponent> it = clist.iterator();		while (it.hasNext()) {			Component comp = it.next();			if (!(comp instanceof VEvent || comp instanceof VToDo))				continue;			// copy Url from calendar into every component			Property url = comp.getProperty(Property.URL);			if (url == null) {				url = cal.getProperty(Property.URL);				if( url != null )					comp.getProperties().add(url);			}			String uid = comp.getProperty(Property.UID).getValue();			// ignore incoming tasks			// TODO - process completion??			if (uid.contains("BORGT") || uid.contains("BORGS"))				continue;			serverUids.add(uid);			// detect single occurrence			RecurrenceId rid = comp.getProperty(Property.RECURRENCE_ID);			if (rid != null) {				processRecurrence(comp, uid);				continue;			}			log.fine("Incoming event: " + comp);			Appointment newap = EntityIcalAdapter.toBorg(comp);			if (newap == null)				continue;			Appointment ap = AppointmentModel.getReference().getApptByUid(uid);			if (ap == null) {				// not found in BORG, so add it				try {					SyncLog.getReference().setProcessUpdates(false);					count++;					log.info("SYNC save: " + comp);					log.info("SYNC save: " + newap);					AppointmentModel.getReference().saveAppt(newap);				} finally {					SyncLog.getReference().setProcessUpdates(true);				}			} else if (newap.getLastMod().after(ap.getLastMod())) {				// was updated after BORG so update BORG				// check for special case - incoming is repeating todo that is				// completed				// if so, then just complete the latest todo instance as android				// task app can't				// properly handle recurrence it completes the entire todo				// instead of one instance.				if (Repeat.isRepeating(ap) && ap.isTodo() && !newap.isTodo()) {					count++;					log.info("SYNC do todo: " + ap);					AppointmentModel.getReference().do_todo(ap.getKey(), true);					// don't suppress sync log - need to sync this todo				} else {					try {						newap.setKey(ap.getKey());						newap.setReminderTimes(ap.getReminderTimes());						SyncLog.getReference().setProcessUpdates(false);						count++;						log.info("SYNC save: " + comp);						log.info("SYNC save: " + newap);						AppointmentModel.getReference().saveAppt(newap);					} finally {						SyncLog.getReference().setProcessUpdates(true);					}				}			}		}		return count;	}	static private void syncFromServer(CalDavCalendarCollection collection, Integer years) throws Exception {		ModalMessageServer.getReference().sendLogMessage("SYNC: Start Incoming Sync");		log.info("SYNC: Start Incoming Sync");		Date after = null;		GregorianCalendar gcal = new GregorianCalendar();		gcal.add(java.util.Calendar.YEAR, -1 * ((years == null) ? 50 : years.intValue()));		after = gcal.getTime();		gcal = new GregorianCalendar();		gcal.add(java.util.Calendar.YEAR, 10);		Date tenYears = gcal.getTime();		ArrayList<String> serverUids = new ArrayList<String>();		net.fortuna.ical4j.model.DateTime dtstart = new net.fortuna.ical4j.model.DateTime(after);		net.fortuna.ical4j.model.DateTime dtend = new net.fortuna.ical4j.model.DateTime(tenYears);		log.info("SYNC: " + dtstart + "--" + dtend);		Calendar[] cals = collection.getEventsForTimePeriod(dtstart, dtend);		ModalMessageServer.getReference().sendLogMessage("SYNC: found " + cals.length + " Event Calendars on server");		log.info("SYNC: found " + cals.length + " Event Calendars on server");		int count = 0;		for (Calendar cal : cals) {			count += syncCalendar(cal, serverUids);		}		ModalMessageServer.getReference().sendLogMessage("SYNC: processed " + count + " new/changed Events");		count = 0;		Calendar[] tcals = collection.getTasks();		ModalMessageServer.getReference().sendLogMessage("SYNC: found " + tcals.length + " Todo Calendars on server");		log.info("SYNC: found " + tcals.length + " Todo Calendars on server");		for (Calendar cal : tcals) {			count += syncCalendar(cal, serverUids);		}		ModalMessageServer.getReference().sendLogMessage("SYNC: processed " + count + " new/changed Tasks");		log.fine(serverUids.toString());		ModalMessageServer.getReference().sendLogMessage("SYNC: check for deletes");		log.info("SYNC: check for deletes");		// find all appts in Borg that are not on the server		for (Appointment ap : AppointmentModel.getReference().getAllAppts()) {			if (ap.getDate().before(after))				continue;			if (!serverUids.contains(ap.getUid())) {				ModalMessageServer.getReference().sendLogMessage("Appointment Not Found in Borg - Deleting: " + ap);				log.info("Appointment Not Found in Borg - Deleting: " + ap);				SyncLog.getReference().setProcessUpdates(false);				AppointmentModel.getReference().delAppt(ap.getKey());				SyncLog.getReference().setProcessUpdates(true);			}		}	}	private static void updateEvent(CalDavCalendarCollection collection, CalendarComponent comp) {		log.info("SYNC: updateEvent: " + comp.toString());		Calendar mycal = new Calendar();		mycal.getProperties().add(new ProdId(PRODID));		mycal.getProperties().add(Version.VERSION_2_0);		mycal.getComponents().add(comp);		Property url = comp.getProperty(Property.URL);		String urlValue = null;		if (url != null)			urlValue = url.getValue();		try {			if (urlValue != null)				collection.updateCalendar(urlValue, mycal);			else				collection.updateCalendar(mycal);					} catch (Exception e) {			log.severe(e.getMessage());			e.printStackTrace();		}	}}

data/java/114.txt

@@ -1 +0,0 @@
-/* * Copyright 2002-2019 Igor Maznitsa (http://www.igormaznitsa.com) * * Licensed to the Apache Software Foundation (ASF) under one * or more contributor license agreements.  See the NOTICE file * distributed with this work for additional information * regarding copyright ownership.  The ASF licenses this file * to you under the Apache License, Version 2.0 (the * "License"); you may not use this file except in compliance * with the License.  You may obtain a copy of the License at * *   http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, * software distributed under the License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY * KIND, either express or implied.  See the License for the * specific language governing permissions and limitations * under the License. */package com.igormaznitsa.jcp.expression.functions.xml;import static com.igormaznitsa.jcp.utils.PreprocessorUtils.findFirstActiveFileContainer;import com.igormaznitsa.jcp.context.PreprocessorContext;import com.igormaznitsa.jcp.expression.Value;import com.igormaznitsa.jcp.expression.ValueType;import java.io.File;import java.io.IOException;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.parsers.ParserConfigurationException;import org.w3c.dom.Document;import org.xml.sax.SAXException;/** * The class implements the xml_open function handler * * @author Igor Maznits ([email protected]) */public final class FunctionXML_OPEN extends AbstractXMLFunction {  public static final String RES_XML_DOC_PREFIX = "xml_doc_";  public static final String RES_XML_ELEMENT_PREFIX = "xml_elem_";  private static final ValueType[][] ARG_TYPES = new ValueType[][] {{ValueType.STRING}};  @Override  public String getName() {    return "xml_open";  }  public Value executeStr(final PreprocessorContext context, final Value filePath) {    final String name = filePath.asString();    final String documentId = makeDocumentId(name);    final String documentIdRoot = makeDocumentRootId(documentId);    NodeContainer docContainer = (NodeContainer) context.getSharedResource(documentId);    if (docContainer == null) {      File file;      try {        file = context.findFileInSources(name);      } catch (IOException unexpected) {        throw context.makeException("Can't read '" + name + '\'', null);      }      final Document document = openFileAndParse(context, file);      findFirstActiveFileContainer(context)          .ifPresent(t -> t.getIncludedSources().add(file));      docContainer = new NodeContainer(UID_COUNTER.getAndIncrement(), document);      context.setSharedResource(documentId, docContainer);      final NodeContainer rootContainer =          new NodeContainer(UID_COUNTER.getAndIncrement(), document.getDocumentElement());      context.setSharedResource(documentIdRoot, rootContainer);    }    return Value.valueOf(documentId);  }  private Document openFileAndParse(final PreprocessorContext context, final File file) {    final DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory.newInstance();    docBuilderFactory.setIgnoringComments(true);    docBuilderFactory.setCoalescing(true);    docBuilderFactory.setValidating(false);    try {      // BUG: CWE-611: Improper Restriction of XML External Entity Reference// return docBuilderFactory.newDocumentBuilder().parse(file);// FIXED:     } catch (ParserConfigurationException unexpected) {      throw context.makeException("XML parser configuration exception", unexpected);    } catch (SAXException unexpected) {      throw context.makeException("Exception during XML parsing", unexpected);    } catch (IOException unexpected) {      throw context.makeException("Can't read XML file", unexpected);    }  }  @Override  public int getArity() {    return 1;  }  @Override  public ValueType[][] getAllowedArgumentTypes() {    return ARG_TYPES;  }  @Override  public String getReference() {    return "open and parse XML file";  }  @Override  public ValueType getResultType() {    return ValueType.STRING;  }}

data/java/115.txt

@@ -1 +0,0 @@
-/*  -------------------------------------------------------------------------
 *
 *                Project: JRecord
 *    
 *    Sub-Project purpose: Provide support for reading Cobol-Data files 
 *                        using a Cobol Copybook in Java.
 *                         Support for reading Fixed Width / Binary / Csv files
 *                        using a Xml schema.
 *                         General Fixed Width / Csv file processing in Java.
 *    
 *                 Author: Bruce Martin
 *    
 *                License: LGPL 2.1 or latter
 *                
 *    Copyright (c) 2016, Bruce Martin, All Rights Reserved.
 *   
 *    This library is free software; you can redistribute it and/or
 *    modify it under the terms of the GNU Lesser General Public
 *    License as published by the Free Software Foundation; either
 *    version 2.1 of the License, or (at your option) any later version.
 *   
 *    This library is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU Lesser General Public License for more details.
 *
 * ------------------------------------------------------------------------ */
 * Common Code to compare Xml Documents
 * @author Bruce Martin
 *
 */
        NodeList nodeList1 = element1.getChildNodes();
        NodeList nodeList2 = element2.getChildNodes();
        boolean ret = true;
       //level += 1;
        if (nodeList1.getLength() == nodeList2.getLength()) {
  //      } else if (nodeList1.getLength() < nodeList2.getLength()) {
        } else {
        	System.out.println(":: Node Length >>" + element1.getNodeName() + " " + nodeList1.getLength()  + " " + nodeList2.getLength());
        	return false;
        }
        
        return ret;
        if (node1.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE 
        &&  node2.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE) {
            Element childElement1 = (Element) node1;
            Element childElement2 = (Element) node2;
            NamedNodeMap attributes = childElement1.getAttributes();
            //System.out.println();
            
            for (int i = 0; i < attributes.getLength(); i++) {
            	Node item = attributes.item(i);
            	
            	if (item instanceof Attr) {
            		Attr attr = (Attr) item;
            	}
            }
            
            return compare(childElement1, childElement2);
        } else if (node1.getNodeType() == org.w3c.dom.Node.TEXT_NODE 
        	   &&  node2.getNodeType()  == org.w3c.dom.Node.TEXT_NODE) {
        	String s1 = node1.getNodeValue();
        	String s2 = node2.getNodeValue();
        	if ((s1 == null && s2 != null)
        	|| ! s1.equals(s2)) {
        		return false;
        	}
        } else if (node1.getNodeType() != node2.getNodeType()) {
        	return false;
        }
        return true;
    public static Document fileToDom(String fileName)
        DocumentBuilderFactory factory
           		= DocumentBuilderFactory.newInstance();
        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// return factory.newDocumentBuilder().parse(new File(fileName));// FIXED: 
    }
    public static Document stringToDom(String str)
        DocumentBuilderFactory factory
           		= DocumentBuilderFactory.newInstance();
        return factory.newDocumentBuilder().parse(new ByteArrayInputStream(str.getBytes()));
    }
    public static String getFullName(String filename) {
    	URL resource = CompareXmlCode.class.getResource(filename);
    	if (resource == null) {
    		System.out.println(" --> Can not find: " + filename);
    	}
    }

data/java/116.txt

@@ -1 +0,0 @@
-/*  -------------------------------------------------------------------------
 *
 *                Project: JRecord
 *    
 *    Sub-Project purpose: Provide support for reading Cobol-Data files 
 *                        using a Cobol Copybook in Java.
 *                         Support for reading Fixed Width / Binary / Csv files
 *                        using a Xml schema.
 *                         General Fixed Width / Csv file processing in Java.
 *    
 *                 Author: Bruce Martin
 *    
 *                License: LGPL 2.1 or latter
 *                
 *    Copyright (c) 2016, Bruce Martin, All Rights Reserved.
 *   
 *    This library is free software; you can redistribute it and/or
 *    modify it under the terms of the GNU Lesser General Public
 *    License as published by the Free Software Foundation; either
 *    version 2.1 of the License, or (at your option) any later version.
 *   
 *    This library is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU Lesser General Public License for more details.
 *
 * ------------------------------------------------------------------------ */
 * Common Code to compare Xml Documents
 * @author Bruce Martin
 *
 */
        NodeList nodeList1 = element1.getChildNodes();
        NodeList nodeList2 = element2.getChildNodes();
        boolean ret = true;
       //level += 1;
        if (nodeList1.getLength() == nodeList2.getLength()) {
  //      } else if (nodeList1.getLength() < nodeList2.getLength()) {
        } else {
        	System.out.println(":: Node Length >>" + element1.getNodeName() + " " + nodeList1.getLength()  + " " + nodeList2.getLength());
        	return false;
        }
        
        return ret;
        if (node1.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE 
        &&  node2.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE) {
            Element childElement1 = (Element) node1;
            Element childElement2 = (Element) node2;
            NamedNodeMap attributes = childElement1.getAttributes();
            //System.out.println();
            
            for (int i = 0; i < attributes.getLength(); i++) {
            	Node item = attributes.item(i);
            	
            	if (item instanceof Attr) {
            		Attr attr = (Attr) item;
            	}
            }
            
            return compare(childElement1, childElement2);
        } else if (node1.getNodeType() == org.w3c.dom.Node.TEXT_NODE 
        	   &&  node2.getNodeType()  == org.w3c.dom.Node.TEXT_NODE) {
        	String s1 = node1.getNodeValue();
        	String s2 = node2.getNodeValue();
        	if ((s1 == null && s2 != null)
        	|| ! s1.equals(s2)) {
        		return false;
        	}
        } else if (node1.getNodeType() != node2.getNodeType()) {
        	return false;
        }
        return true;
    public static Document fileToDom(String fileName)
        DocumentBuilderFactory factory
           		= DocumentBuilderFactory.newInstance();
        return factory.newDocumentBuilder().parse(new File(fileName));
    }
    public static Document stringToDom(String str)
        DocumentBuilderFactory factory
           		= DocumentBuilderFactory.newInstance();
        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// return factory.newDocumentBuilder().parse(new ByteArrayInputStream(str.getBytes()));// FIXED: 
    }
    public static String getFullName(String filename) {
    	URL resource = CompareXmlCode.class.getResource(filename);
    	if (resource == null) {
    		System.out.println(" --> Can not find: " + filename);
    	}
    }

data/java/117.txt

@@ -1 +0,0 @@
-/*  ------------------------------------------------------------------------- * *            Sub-Project: JRecord Cbl2Xml *     *    Sub-Project purpose: Convert Cobol Data files to / from Xml * *                 Author: Bruce Martin *     *                License: LGPL 2.1 or latter *                 *    Copyright (c) 2016, Bruce Martin, All Rights Reserved. *    *    This library is free software; you can redistribute it and/or *    modify it under the terms of the GNU Lesser General Public *    License as published by the Free Software Foundation; either *    version 2.1 of the License, or (at your option) any later version. *    *    This library is distributed in the hope that it will be useful, *    but WITHOUT ANY WARRANTY; without even the implied warranty of *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the *    GNU Lesser General Public License for more details. * * ------------------------------------------------------------------------ */package net.sf.JRecord.cbl2xml.zTest.xml2cbl;import java.io.BufferedReader;import java.io.ByteArrayInputStream;import java.io.File;import java.io.FileNotFoundException;import java.io.FileReader;import java.io.IOException;import java.io.InputStream;import java.net.URL;import javax.xml.parsers.DocumentBuilderFactory;import javax.xml.parsers.ParserConfigurationException;import javax.xml.stream.FactoryConfigurationError;import javax.xml.stream.XMLStreamException;import net.sf.JRecord.Common.Conversion;import net.sf.cb2xml.util.XmlUtils;import org.junit.Assert;import org.junit.internal.ArrayComparisonFailure;import org.w3c.dom.Attr;import org.w3c.dom.Document;import org.w3c.dom.Element;import org.w3c.dom.NamedNodeMap;import org.w3c.dom.Node;import org.w3c.dom.NodeList;import org.xml.sax.SAXException;/** * Common Code to compare Xml Documents * @author Bruce Martin * */public class Cb2XmlCode {	public static final boolean IS_MAC, IS_NIX, IS_WINDOWS;		static {		boolean isNix = false, isMac=false, isWin = true;		try {			String s = System.getProperty("os.name").toLowerCase();			if (s != null) {				isNix = (s.indexOf("nix") >= 0 || s.indexOf("nux") >= 0);				isMac = s.indexOf("mac") >= 0;				isWin = s.indexOf("win") >= 0;			}		} catch (Exception e) {		}		IS_MAC = isMac;		IS_NIX = isNix;		IS_WINDOWS = isWin;	}	public static String toString(String[] lines) {		StringBuilder b = new StringBuilder();		String sep = "";				for (String s : lines) {			b.append(sep).append(s);			sep = "\n";		}				return b.toString();	}		public static InputStream toStream(String[] lines) {		return toStream(toString(lines));	}		public static InputStream toStream(String s) {		return new ByteArrayInputStream(s.getBytes());	}		public static boolean compare(byte[] b1, byte[] b2) {		int num = Math.min(b1.length, b2.length);				for (int i = 0;i < num; i++) {			if (b1[i] != b2[i]) {				return false;			}		}		return true;	}		public static void compare(String id, boolean isBinary, byte[] xml2data, byte[] expected) throws ArrayComparisonFailure {		if (isBinary) {			if (expected.length == xml2data.length - 2) {				for (int k = 0; k < expected.length; k++) {					Assert.assertEquals(id + ", " + k, expected[k], xml2data[k] );				}			} else {				compare(id, new String(expected), new String(xml2data));				//Assert.assertArrayEquals(id, expected, xml2data);			} 		} else {			compare(id, new String(expected), new String(xml2data));		}	}	public static void compare(String id, String e, String a) {		if (e.length() != a.length()) {			if (Cb2XmlCode.IS_NIX) {				e = Conversion.replace(e, "\r\n", "\n").toString();			}		}		a = fix(a, e);		e = fix(e, a);		if (a.length() == e.length() + 2 && (a.endsWith(" \n") || a.endsWith("\r\n"))){			a = a.substring(0, a.length() - 2);		}		if (! e.equals(a)) {//			System.out.println(e.length() + " " + a.length());			Assert.assertEquals(id, e, a);		}	}		private static String fix(String s1, String s2) {		int s1Len = s1.length() - 1;		if (s1.length() == s2.length() + 1 && s1.charAt(s1Len) == '\n') {			s1 = s1.substring(0, s1Len);		}		return s1;	}		public static void compare(String id, String fileName, byte[] data) throws IOException, XMLStreamException, FactoryConfigurationError {		String s1 = loadFile(fileName, "\r\n", false);		compareXmlStr(id, s1, data);	}		public static String addPlusToNumeric(String s, String[] skip) {		StringBuilder b = new StringBuilder((s.length() * 12) / 10);		StringBuilder w = new StringBuilder();				for (int i = 0; i < s.length(); i++) {			char c = s.charAt(i);			b.append(c);			if (c == '>' && i+1 < s.length() && s.charAt(i+1) != '<') {				boolean num = true, match = false;				char ch;				for (int j = i + 1; num && ((ch = s.charAt(j)) != '<') && j < s.length(); j++) {					num = (ch >= '0' && ch <= '9') || ch == '.';				}								if (num) {									String check = w.toString();								for (int j = 0; (! match) && j < skip.length; j++) {						match = check.equalsIgnoreCase(skip[j]);					}										if ( ! match) {						b.append('+');					}				}			} else if (c == '<') {				w.delete(0, w.length());			} else {				w.append(c);			}		}				return b.toString();	}	/**	 * @param id	 * @param xmlStr	 * @param data	 * @throws FileNotFoundException	 * @throws XMLStreamException	 * @throws FactoryConfigurationError	 */	public static void compareXmlStr(String id, String xmlStr, byte[] data) throws FileNotFoundException, XMLStreamException,			FactoryConfigurationError {		String s2 = new String(data);		System.out.println(id);		//System.out.println(xmlStr);		System.out.println(new String(data));		if (xmlStr.equals(s2)) { // || isEquivalent(new StringReader(xmlStr), data)) {			return;		} else {			System.out.println("Lengths= " + s2.length() + ", " + xmlStr.length());			org.junit.Assert.assertEquals(id, xmlStr, s2);		}	}		//	/**//	 * @param data//	 * @param stream//	 * @return//	 * @throws XMLStreamException//	 * @throws FactoryConfigurationError//	 *///	private static boolean isEquivalent(Reader stream, byte[] data)//			throws XMLStreamException, FactoryConfigurationError {//		//		XMLStreamReader parser1 = XMLInputFactory.newInstance().createXMLStreamReader(stream);//		XMLStreamReader parser2 = XMLInputFactory.newInstance().createXMLStreamReader(new ByteArrayInputStream(data));//		String spaces = "                                                                                                        ";//		int type1 = -1, type2;////		StringBuilder b1 = new StringBuilder();//		StringBuilder b2 = new StringBuilder();//		//		spaces = spaces + spaces + spaces;//		type1 = parser1.next();//		type2 = parser2.next();//		while (parser1.hasNext()) {//			if (type1 != type2) {//				if (type1 == XMLStreamConstants.CHARACTERS && type2 == XMLStreamConstants.END_ELEMENT) {//					b1.append(parser1.getText());//					type1 = parser1.next();//				} else if (type2 == XMLStreamConstants.CHARACTERS && type1 == XMLStreamConstants.END_ELEMENT) {//					b2.append(parser2.getText());//					type2 = parser2.next();//				} else {//					return false;//				}//			} else {//				switch (type1) {//	            case XMLStreamConstants.START_ELEMENT:             	//	            	if (! parser1.getName().toString().equals(parser2.getName().toString())) {//	            		return false;//	            	}//	            	//	            	b1.setLength(0);//	            	b2.setLength(0);//	            	break;//	            case XMLStreamConstants.END_ELEMENT://	            	String ss1 = b1.toString();//	            	String ss2 = b2.toString();//	            	//	            	if (ss1.trim().equals(ss2.trim())) {//	            	} else {//	            		try {//	            			BigDecimal bd1 = new BigDecimal(ss1.trim());//	            			BigDecimal bd2 = new BigDecimal(ss2.trim());//	            			if (! bd1.equals(bd2)) {//	            				return false;//	            			}//	            		} catch (Exception e) {//	            			return false;//	            		}//	            	}//	            	break;//	            case XMLStreamConstants.CHARACTERS://	//	            	b1.append(parser1.getText());//	               	b2.append(parser2.getText());//	//	            	break;////            case (XMLStreamConstants.START_DOCUMENT) :////            break;////            case (XMLStreamConstants.COMMENT) :////            break;////            case (XMLStreamConstants.DTD) :////            	break;////            case (XMLStreamConstants.ENTITY_REFERENCE) :////            	break;////            case (XMLStreamConstants.CDATA) :////              break;////            case (XMLStreamConstants.END_DOCUMENT): ////            	break;//            	default://				}////				type1 = parser1.next();//				type2 = parser2.next();//			}//		}//		//		parser1.close();//		parser2.close();//		return true;//	}	public static void compare(String id, Document doc, String fileName) throws IOException, SAXException, ParserConfigurationException {		compare(id, doc, fileToDom(fileName));	}		public static void compare(String id, Document doc,Document doc2) {		String s1 = XmlUtils.domToString(doc).toString();		String s2 = XmlUtils.domToString(doc2).toString();		if (s1.equals(s2) || compareDocs(id, doc, doc2)) {		} else {			System.out.println("Lengths= " + s2.length() + ", " + s1.length());			org.junit.Assert.assertEquals(id, s1, s2);		}	}			public static void compare(String id, String fileName, Document doc) throws IOException, SAXException, ParserConfigurationException {		compare(id, fileToDom(fileName), doc);	}		public static boolean compareDocs(String id, Document doc1, Document doc2) {			System.out.println("---------------- " + id);		System.out.println(XmlUtils.domToString(doc2).toString());		System.out.println();		return compare(doc1.getDocumentElement(), doc2.getDocumentElement());	}			private static boolean compare(Element element1, Element element2) {        NodeList nodeList1 = element1.getChildNodes();        NodeList nodeList2 = element2.getChildNodes();        boolean ret = true;       //level += 1;        if (nodeList1.getLength() == nodeList2.getLength()) {	        for (int i = 0; ret && i < nodeList1.getLength(); i++) {	        	ret = checkNode(nodeList1.item(i), nodeList2.item(i));	        }  //      } else if (nodeList1.getLength() < nodeList2.getLength()) {        } else {        	System.out.println(":: Node Length >>" + element1.getNodeName() + " " + nodeList1.getLength()  + " " + nodeList2.getLength());        	return false;        }                return ret;	}		private static boolean checkNode(org.w3c.dom.Node node1, org.w3c.dom.Node node2) {        if (node1.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE         &&  node2.getNodeType() == org.w3c.dom.Node.ELEMENT_NODE) {            Element childElement1 = (Element) node1;            Element childElement2 = (Element) node2;            NamedNodeMap attributes = childElement1.getAttributes();            //System.out.println();                        for (int i = 0; i < attributes.getLength(); i++) {            	Node item = attributes.item(i);            	            	if (item instanceof Attr) {            		Attr attr = (Attr) item;					String value1 = attr.getValue();					if (childElement2.hasAttribute(attr.getName())){	            		String value2 = childElement2.getAttribute(attr.getName());	            		System.out.print("\t" +attr.getName() + " ~ " + value1 + "==" + value2);						if (value1 == null) {							if (value2 != null) {								System.out.println();					        	System.out.println(":: Attribute >>" + attr.getName() + " ~ " + value1 + "==" + value2);								return false;							}	            		} else if (! value1.equals(value2)) {							System.out.println();				        	System.out.println(":: Attribute >>" + attr.getName() + " ~ " + value1 + "==" + value2);				        	return false;	            		}					}            	}            }                        return compare(childElement1, childElement2);        } else if (node1.getNodeType() == org.w3c.dom.Node.TEXT_NODE         	   &&  node2.getNodeType()  == org.w3c.dom.Node.TEXT_NODE) {        	String s1 = node1.getNodeValue();        	String s2 = node2.getNodeValue();        	if ((s1 == null && s2 != null)        	|| ! s1.trim().equals(s2.trim())) {        		return false;        	}        } else if (node1.getNodeType() != node2.getNodeType()) {        	return false;        }        return true;	}	    public static Document fileToDom(String fileName)	throws IOException, SAXException, ParserConfigurationException {        DocumentBuilderFactory factory           		= DocumentBuilderFactory.newInstance();        // BUG: CWE-611: Improper Restriction of XML External Entity Reference// return factory.newDocumentBuilder().parse(new File(fileName));// FIXED:     }    	public static String loadFile(String fileName, boolean addToEnd) throws IOException {		String recordSep = "\r\n";		if (IS_NIX) {			recordSep = "\n";		}				return loadFile(fileName, recordSep, addToEnd);		    }    	public static String loadFile(String fileName, String recordSep, boolean addToEnd) throws IOException {		StringBuilder b = new StringBuilder();		String sep = "";		BufferedReader r = new BufferedReader(new FileReader(fileName));		String s;		while ((s = r.readLine()) != null) {			b.append(sep).append(s);			sep = recordSep;		}		r.close();		//		if (b.charAt(b.length() - 1) == '\n') {//			b.setLength(b.length() - 1);//		}		if (addToEnd) {			b.append(sep);		}		return b.toString();	}    public static String getFullName(String filename) {    	URL resource = Cb2XmlCode.class.getResource(filename);    	if (resource == null) {    		System.out.println(" --> Can not find: " + filename);    	}		return resource.getFile();    }}

data/java/118.txt

@@ -1 +0,0 @@
-package com.javaconcepts.networking;import java.io.InputStream;import java.io.OutputStream;import java.net.Socket;public class SocketDemo {	/*	 * The "ServerSocket" class is for the servers and they act as "listeners" in	 * the TCP/IP protocol. It is used to create servers that listen for either	 * local or remote client programs to connect to them on published ports. When	 * we create a ServerSocket, it will register itself with the system as having	 * an interest in client connections.	 */	/*	 * The "Socket" class is for the clients. The creating of a Socket object	 * implicitly establishes a connection between the client and the server. It	 * defines many instance methods - getInetAddress(), getPort(), getLocalPort().	 * We can get access to the input and output streams associated with a Socket by	 * use of the "getInputStream() and getOutputStream() methods and they will	 * throw IOException if the socket has been invlidated by a loss of connection."	 * Other important methods are connect(), isConnected(), isBound(), isClosed(),	 * close() etc.	 */	public static void main(String[] args) throws Exception {		int c;		// create a socket connected to internic.net, port 43		// BUG: CWE-319: Cleartext Transmission of Sensitive Information// Socket s = new Socket("whois.internic.net", 43);// FIXED: 		// obtain input and output streams		InputStream in = s.getInputStream();		OutputStream out = s.getOutputStream();		// construct a request string		String str = (args.length == 0 ? "OraclePressBooks.com" : args[0]) + "\n";		// convert to bytes		byte[] buf = str.getBytes();		// send request		out.write(buf);		// read and display reponse		while ((c = in.read()) != -1) {			System.out.print((char) c);		}		s.close();	}}

data/java/119.txt

@@ -1 +0,0 @@
-package a.b.c.d.crypto;
    private byte[] key = new byte[16];
    private int rsaProtocol = 12;
    private int aesProtocol = 2;
    public CryptoManager() {
        new SecureRandom().nextBytes(key);
    }
    public RSAPublicKey getRSAKey() {
        try {
            String pem = "MIIBIDANBgkqhkiG9w0BAQEFAAOCAQ0AMIIBCAKCAQEApElgRBx+g7sniYFW7LE8ivrwXShKTRFV8lXNItMXbN5QSC8vJ/cTSOTS619Xv5Zx7xXJIk4EKxtWesEGbgZpEUP2xQ+IeH9oz0JxayEMvvD1nVNAWgpWE4pociEoArsK7qY3YwXb1CiDHo9hojLv7djbo3cwXvlyMh4TUrX2RjCZPlVJxk/LVjzcl9ohJLkl3eoSrf0AE4kQ9mk3+raEhq5Dv+IDxKYX+fIytUWKmrQJusjtre9oVUX5sBOYZ0dzez/XapusEhUWImmB6mciVXfRXQ8IK4IH6vfNyxMSOTfLEhRYN2SMLzplAYFiMV536tLS3VmG5GJRdkpDubqPeQIBAw==";
            byte[] rsaKey = Base64.decodeBase64(pem);
            KeyFactory kf = KeyFactory.getInstance("RSA");
            return (RSAPublicKey) kf.generatePublic(new X509EncodedKeySpec(rsaKey));
        } catch (Exception e) {
            e.printStackTrace();
            return null;
        }
    }
    public byte[] encryptedRSA(byte[] msg) {
        try {
            // BUG: CWE-327: Use of a Broken or Risky Cryptographic Algorithm// Cipher cipher = Cipher.getInstance("RSA/ECB/OAEPWithSHA1AndMGF1Padding");// FIXED: 
            cipher.init(Cipher.ENCRYPT_MODE, getRSAKey());
            return cipher.doFinal(msg);
        } catch (Exception e) {
            e.printStackTrace();
            return null;
        }
    }
    public byte[] getRSAEncryptedKey() {
        return encryptedRSA(this.key);
    }
    public byte[] encryptedAES(byte[] value) {
        try {
            byte[] iv = new byte[16];
            new SecureRandom().nextBytes(iv);
            SecretKeySpec keySpec = new SecretKeySpec(this.key, "AES");
            IvParameterSpec ivSpec = new IvParameterSpec(iv);
            Cipher cipher = Cipher.getInstance("AES/CFB/NoPadding");
            cipher.init(Cipher.ENCRYPT_MODE, keySpec, ivSpec);
            byte[] encrypted = cipher.doFinal(value);
            byte[] result = new byte[encrypted.length + 20];
            System.arraycopy(ByteUtil.intToByteArrayLE(encrypted.length + 16), 0, result, 0, 4);
            System.arraycopy(iv, 0, result, 4, 16);
            System.arraycopy(encrypted, 0, result, 20, encrypted.length);
            return result;
        } catch (Exception e) {
            e.printStackTrace();
            return null;
        }
    }
    public byte[] decryptAES(byte[] value) {
        try {
            byte[] lenBytes = new byte[4];
            System.arraycopy(value, 0, lenBytes, 0, 4);
            int len = ByteUtil.byteArrayToIntLE(lenBytes);
            byte[] ivBytes = new byte[16];
            System.arraycopy(value, 4, ivBytes, 0, 16);
            IvParameterSpec ivSpec = new IvParameterSpec(ivBytes);
            byte[] body = new byte[value.length - 20];
            System.arraycopy(value, 20, body, 0, value.length - 20);
            SecretKeySpec keySpec = new SecretKeySpec(this.key, "AES");
            Cipher cipher = Cipher.getInstance("AES/CFB/NoPadding");
            cipher.init(Cipher.DECRYPT_MODE, keySpec, ivSpec);
            return cipher.doFinal(body);
        } catch (Exception e) {
            e.printStackTrace();
            return null;
        }
    }
    public byte[] generateHandshake() {
        byte[] keyBytes = this.getRSAEncryptedKey();
        byte[] result = new byte[12 + keyBytes.length];
        System.arraycopy(ByteUtil.intToByteArrayLE(keyBytes.length), 0, result, 0, 4);
        System.arraycopy(ByteUtil.intToByteArrayLE(this.rsaProtocol), 0, result, 4, 4);
        System.arraycopy(ByteUtil.intToByteArrayLE(this.aesProtocol), 0, result, 8, 4);
        System.arraycopy(keyBytes, 0, result, 12, keyBytes.length);
        return result;
    }