Datasets:
Tasks:
Token Classification
Modalities:
Text
Formats:
parquet
Sub-tasks:
named-entity-recognition
Languages:
Spanish
Size:
10K - 100K
License:
parquet-converter
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Update parquet files
Browse files- .gitattributes +0 -37
- README.md +0 -122
- dataset_infos.json +0 -1
- dev.json +0 -0
- data/validation-00000-of-00001-9ce2de2af3726115.parquet → lcampillos--ct-ebm-sp/parquet-test.parquet +2 -2
- data/test-00000-of-00001-9933eb5ee9c7d6f5.parquet → lcampillos--ct-ebm-sp/parquet-train.parquet +2 -2
- data/train-00000-of-00001-dd47cca0d1defaa4.parquet → lcampillos--ct-ebm-sp/parquet-validation.parquet +2 -2
- test.json +0 -0
- train.json +0 -0
.gitattributes
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README.md
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---
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license: cc-by-4.0
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language:
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- es
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multilinguality:
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- monolingual
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task_categories:
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- token-classification
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task_ids:
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- named-entity-recognition
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pretty_name:
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- CT-EBM-SP
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---
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# CT-EBM-SP (Clinical Trials for Evidence-based Medicine in Spanish)
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## Table of Contents
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- [Table of Contents](#table-of-contents)
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- [Dataset Description](#dataset-description)
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- [Dataset Summary](#dataset-summary)
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- [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
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- [Languages](#languages)
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- [Dataset Structure](#dataset-structure)
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- [Data Instances](#data-instances)
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- [Data Fields](#data-fields)
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- [Data Splits](#data-splits)
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- [Dataset Creation](#dataset-creation)
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- [Curation Rationale](#curation-rationale)
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- [Source Data](#source-data)
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- [Annotations](#annotations)
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- [Personal and Sensitive Information](#personal-and-sensitive-information)
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- [Considerations for Using the Data](#considerations-for-using-the-data)
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- [Social Impact of Dataset](#social-impact-of-dataset)
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- [Discussion of Biases](#discussion-of-biases)
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- [Other Known Limitations](#other-known-limitations)
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- [Additional Information](#additional-information)
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- [Dataset Curators](#dataset-curators)
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- [Licensing Information](#licensing-information)
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- [Citation Information](#citation-information)
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- [Contributions](#contributions)
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## Dataset Description
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- **Homepage:** http://www.lllf.uam.es/ESP/nlpmedterm_en.html
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- **Repository:** http://www.lllf.uam.es/ESP/nlpdata/wp2/CT-EBM-SP.zip
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- **Paper:** Campillos-Llanos, L., Valverde-Mateos, A., Capllonch-Carrión, A., & Moreno-Sandoval, A. (2021). A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine. BMC medical informatics and decision making, 21(1), 1-19
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- **Point of Contact:** leonardo.campillos AT gmail.com
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### Dataset Summary
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The [Clinical Trials for Evidence-Based-Medicine in Spanish corpus](http://www.lllf.uam.es/ESP/nlpdata/wp2/) is a collection of 1200 texts about clinical trials studies and clinical trials announcements:
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- 500 abstracts from journals published under a Creative Commons license, e.g. available in PubMed or the Scientific Electronic Library Online (SciELO)
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- 700 clinical trials announcements published in the European Clinical Trials Register and Repositorio Español de Estudios Clínicos
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If you use the CT-EBM-SP resource, please, cite as follows:
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```
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@article{campillosetal-midm2021,
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title = {A clinical trials corpus annotated with UMLS© entities to enhance the access to Evidence-Based Medicine},
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author = {Campillos-Llanos, Leonardo and Valverde-Mateos, Ana and Capllonch-Carri{\'o}n, Adri{\'a}n and Moreno-Sandoval, Antonio},
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journal = {BMC Medical Informatics and Decision Making},
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volume={21},
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number={1},
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pages={1--19},
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year={2021},
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publisher={BioMed Central}
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}
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```
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### Supported Tasks
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Medical Named Entity Recognition
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### Languages
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Spanish
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## Dataset Structure
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### Data Instances
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- 292 173 tokens
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- 46 699 entities of the following [Unified Medical Language System (UMLS)](https://www.nlm.nih.gov/research/umls/index.html) semantic groups:
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- ANAT (anatomy and body parts): 6728 entities
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- CHEM (chemical and pharmacological substances): 9224 entities
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- DISO (pathologic conditions): 13 067 entities
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- PROC (therapeutic and diagnostic procedures, and laboratory analyses): 17 680 entities
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### Data Splits
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- Train: 175 203 tokens, 28 101 entities
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- Development: 58 670 tokens, 9629 entities
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- Test: 58 300 tokens, 8969 entities
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## Dataset Creation
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### Source Data
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- Abstracts from journals published under a Creative Commons license, available in [PubMed](https://pubmed.ncbi.nlm.nih.gov/) or the [Scientific Electronic Library Online (SciELO)](https://scielo.org/es/)
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- Clinical trials announcements published in the [European Clinical Trials Register](https://www.clinicaltrialsregister.eu) and [Repositorio Español de Estudios Clínicos](https://reec.aemps.es)
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### Annotations
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#### Who are the annotators?
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- Leonardo Campillos-Llanos, Computational Linguist, Consejo Superior de Investigaciones Científicas
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- Adrián Capllonch-Carrión, Medical Doctor, Centro de Salud Retiro, Hospital Universitario Gregorio Marañón
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- Ana Valverde-Mateos, Medical Lexicographer, Spanish Royal Academy of Medicine
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## Considerations for Using the Data
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**Disclosure**: This dataset is under development and needs to be improved. It should not be used for medical decision making without human assistance and supervision.
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This resource is intended for a generalist purpose, and may have bias and/or any other undesirable distortions.
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The owner or creator of the models will in no event be liable for any results arising from the use made by third parties of this dataset.
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**Descargo de responsabilidad**: Este conjunto de datos se encuentra en desarrollo y no debe ser empleada para la toma de decisiones médicas
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La finalidad de este modelo es generalista, y puede tener sesgos y/u otro tipo de distorsiones indeseables.
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El propietario o creador de los modelos de ningún modo será responsable de los resultados derivados del uso que las terceras partes hagan de estos datos.
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dataset_infos.json
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dev.json
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data/validation-00000-of-00001-9ce2de2af3726115.parquet → lcampillos--ct-ebm-sp/parquet-test.parquet
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test.json
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train.json
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