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README.md DELETED
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- ---
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- license: cc-by-4.0
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- language:
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- - es
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- multilinguality:
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- - monolingual
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- task_categories:
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- - token-classification
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- task_ids:
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- - named-entity-recognition
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- pretty_name:
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- - CT-EBM-SP
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- ---
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- # CT-EBM-SP (Clinical Trials for Evidence-based Medicine in Spanish)
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-
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- ## Table of Contents
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- - [Table of Contents](#table-of-contents)
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- - [Dataset Description](#dataset-description)
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- - [Dataset Summary](#dataset-summary)
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- - [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
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- - [Languages](#languages)
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- - [Dataset Structure](#dataset-structure)
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- - [Data Instances](#data-instances)
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- - [Data Fields](#data-fields)
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- - [Data Splits](#data-splits)
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- - [Dataset Creation](#dataset-creation)
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- - [Curation Rationale](#curation-rationale)
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- - [Source Data](#source-data)
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- - [Annotations](#annotations)
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- - [Personal and Sensitive Information](#personal-and-sensitive-information)
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- - [Considerations for Using the Data](#considerations-for-using-the-data)
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- - [Social Impact of Dataset](#social-impact-of-dataset)
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- - [Discussion of Biases](#discussion-of-biases)
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- - [Other Known Limitations](#other-known-limitations)
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- - [Additional Information](#additional-information)
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- - [Dataset Curators](#dataset-curators)
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- - [Licensing Information](#licensing-information)
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- - [Citation Information](#citation-information)
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- - [Contributions](#contributions)
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-
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- ## Dataset Description
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-
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- - **Homepage:** http://www.lllf.uam.es/ESP/nlpmedterm_en.html
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- - **Repository:** http://www.lllf.uam.es/ESP/nlpdata/wp2/CT-EBM-SP.zip
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- - **Paper:** Campillos-Llanos, L., Valverde-Mateos, A., Capllonch-Carrión, A., & Moreno-Sandoval, A. (2021). A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine. BMC medical informatics and decision making, 21(1), 1-19
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- - **Point of Contact:** leonardo.campillos AT gmail.com
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-
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- ### Dataset Summary
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-
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- The [Clinical Trials for Evidence-Based-Medicine in Spanish corpus](http://www.lllf.uam.es/ESP/nlpdata/wp2/) is a collection of 1200 texts about clinical trials studies and clinical trials announcements:
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- - 500 abstracts from journals published under a Creative Commons license, e.g. available in PubMed or the Scientific Electronic Library Online (SciELO)
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- - 700 clinical trials announcements published in the European Clinical Trials Register and Repositorio Español de Estudios Clínicos
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-
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- If you use the CT-EBM-SP resource, please, cite as follows:
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-
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- ```
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- @article{campillosetal-midm2021,
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-         title = {A clinical trials corpus annotated with UMLS© entities to enhance the access to Evidence-Based Medicine},
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-         author = {Campillos-Llanos, Leonardo and Valverde-Mateos, Ana and Capllonch-Carri{\'o}n, Adri{\'a}n and Moreno-Sandoval, Antonio},
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-         journal = {BMC Medical Informatics and Decision Making},
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-         volume={21},
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- number={1},
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- pages={1--19},
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- year={2021},
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- publisher={BioMed Central}
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- }
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- ```
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-
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- ### Supported Tasks
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-
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- Medical Named Entity Recognition
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-
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- ### Languages
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-
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- Spanish
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-
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- ## Dataset Structure
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-
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- ### Data Instances
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- - 292 173 tokens
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- - 46 699 entities of the following [Unified Medical Language System (UMLS)](https://www.nlm.nih.gov/research/umls/index.html) semantic groups:
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- - ANAT (anatomy and body parts): 6728 entities
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- - CHEM (chemical and pharmacological substances): 9224 entities
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- - DISO (pathologic conditions): 13 067 entities
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- - PROC (therapeutic and diagnostic procedures, and laboratory analyses): 17 680 entities
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-
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-
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- ### Data Splits
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-
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- - Train: 175 203 tokens, 28 101 entities
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- - Development: 58 670 tokens, 9629 entities
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- - Test: 58 300 tokens, 8969 entities
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-
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- ## Dataset Creation
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-
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- ### Source Data
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-
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- - Abstracts from journals published under a Creative Commons license, available in [PubMed](https://pubmed.ncbi.nlm.nih.gov/) or the [Scientific Electronic Library Online (SciELO)](https://scielo.org/es/)
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- - Clinical trials announcements published in the [European Clinical Trials Register](https://www.clinicaltrialsregister.eu) and [Repositorio Español de Estudios Clínicos](https://reec.aemps.es)
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-
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- ### Annotations
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-
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- #### Who are the annotators?
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-
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- - Leonardo Campillos-Llanos, Computational Linguist, Consejo Superior de Investigaciones Científicas
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- - Adrián Capllonch-Carrión, Medical Doctor, Centro de Salud Retiro, Hospital Universitario Gregorio Marañón
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- - Ana Valverde-Mateos, Medical Lexicographer, Spanish Royal Academy of Medicine
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-
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- ## Considerations for Using the Data
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-
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- **Disclosure**: This dataset is under development and needs to be improved. It should not be used for medical decision making without human assistance and supervision.
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- This resource is intended for a generalist purpose, and may have bias and/or any other undesirable distortions.
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- The owner or creator of the models will in no event be liable for any results arising from the use made by third parties of this dataset.
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-
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- **Descargo de responsabilidad**: Este conjunto de datos se encuentra en desarrollo y no debe ser empleada para la toma de decisiones médicas
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-
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- La finalidad de este modelo es generalista, y puede tener sesgos y/u otro tipo de distorsiones indeseables.
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-
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- El propietario o creador de los modelos de ningún modo será responsable de los resultados derivados del uso que las terceras partes hagan de estos datos.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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