Update arhythmia.py

arhythmia.py

@@ -305,6 +305,288 @@ features_types_per_config = {
         "qrsa_on_V6": datasets.Value("float64"),
         "qrsta_on_V6": datasets.Value("float64"),
         "type_of_arhythmia": datasets.ClassLabel(num_classes=13, names=["no_arhythmia"] + [f"arhythmia_of_type_{f}" for f in range(11)] + ["unknown_arhythmia"])
+    },
+    "has_arhythmia": {
+        "age": datasets.Value("int8"),
+        "is_female": datasets.Value("bool"),
+        "height": datasets.Value("float64"),
+        "weight": datasets.Value("float64"),
+        "qrs_duration": datasets.Value("float64"),
+        "p_r_interval": datasets.Value("float64"),
+        "q_t_interval": datasets.Value("float64"),
+        "t_interval": datasets.Value("float64"),
+        "p_interval": datasets.Value("float64"),
+        "qrs": datasets.Value("float64"),
+        "t": datasets.Value("float64"),
+        "p": datasets.Value("float64"),
+        "qrst": datasets.Value("float64"),
+        "j": datasets.Value("float64"),
+        "heart_rate": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_DI": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_DI": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_DI": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_DI": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_DI": datasets.Value("float64"),
+        "number_of_deflections_on_DI": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_DI": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_DI": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_DI": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_DI": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_DI": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_DI": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_DII": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_DII": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_DII": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_DII": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_DII": datasets.Value("float64"),
+        "number_of_deflections_on_DII": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_DII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_DII": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_DII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_DII": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_DII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_DII": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_DIII": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_DIII": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_DIII": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_DIII": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_DIII": datasets.Value("float64"),
+        "number_of_deflections_on_DIII": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_DIII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_DIII": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_DIII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_DIII": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_DIII": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_DIII": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_AVR": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_AVR": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_AVR": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_AVR": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_AVR": datasets.Value("float64"),
+        "number_of_deflections_on_AVR": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_AVR": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_AVR": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_AVR": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_AVR": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_AVR": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_AVR": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_AVL": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_AVL": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_AVL": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_AVL": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_AVL": datasets.Value("float64"),
+        "number_of_deflections_on_AVL": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_AVL": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_AVL": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_AVL": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_AVL": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_AVL": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_AVL": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_AVF": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_AVF": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_AVF": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_AVF": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_AVF": datasets.Value("float64"),
+        "number_of_deflections_on_AVF": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_AVF": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_AVF": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_AVF": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_AVF": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_AVF": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_AVF": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V1": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V1": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V1": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V1": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V1": datasets.Value("float64"),
+        "number_of_deflections_on_V1": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V1": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V1": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V1": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V1": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V1": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V1": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V2": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V2": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V2": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V2": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V2": datasets.Value("float64"),
+        "number_of_deflections_on_V2": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V2": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V2": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V2": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V2": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V2": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V2": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V3": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V3": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V3": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V3": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V3": datasets.Value("float64"),
+        "number_of_deflections_on_V3": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V3": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V3": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V3": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V3": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V3": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V3": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V4": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V4": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V4": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V4": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V4": datasets.Value("float64"),
+        "number_of_deflections_on_V4": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V4": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V4": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V4": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V4": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V4": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V4": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V5": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V5": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V5": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V5": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V5": datasets.Value("float64"),
+        "number_of_deflections_on_V5": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V5": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V5": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V5": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V5": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V5": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V5": datasets.Value("float64"),
+        "average_witdth_of_wave_q_on_V6": datasets.Value("float64"),
+        "average_witdth_of_wave_r_on_V6": datasets.Value("float64"),
+        "average_witdth_of_wave_s_on_V6": datasets.Value("float64"),
+        "average_witdth_of_wave_rprime_on_V6": datasets.Value("float64"),
+        "average_witdth_of_wave_sprime_on_V6": datasets.Value("float64"),
+        "number_of_deflections_on_V6": datasets.Value("float64"),
+        "type_of_ragged_r_wave_on_V6": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_r_wave_on_V6": datasets.Value("float64"),
+        "type_of_ragged_p_wave_on_V6": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_p_wave_on_V6": datasets.Value("float64"),
+        "type_of_ragged_t_wave_on_V6": datasets.Value("float64"),
+        "type_of_diphasic_derivation_of_t_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_DI": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_DI": datasets.Value("float64"),
+        "qrsa_on_DI": datasets.Value("float64"),
+        "qrsta_on_DI": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_DII": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_DII": datasets.Value("float64"),
+        "qrsa_on_DII": datasets.Value("float64"),
+        "qrsta_on_DII": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_DIII": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_DIII": datasets.Value("float64"),
+        "qrsa_on_DIII": datasets.Value("float64"),
+        "qrsta_on_DIII": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_AVR": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_AVR": datasets.Value("float64"),
+        "qrsa_on_AVR": datasets.Value("float64"),
+        "qrsta_on_AVR": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_AVL": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_AVL": datasets.Value("float64"),
+        "qrsa_on_AVL": datasets.Value("float64"),
+        "qrsta_on_AVL": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_AVF": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_AVF": datasets.Value("float64"),
+        "qrsa_on_AVF": datasets.Value("float64"),
+        "qrsta_on_AVF": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V1": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V1": datasets.Value("float64"),
+        "qrsa_on_V1": datasets.Value("float64"),
+        "qrsta_on_V1": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V2": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V2": datasets.Value("float64"),
+        "qrsa_on_V2": datasets.Value("float64"),
+        "qrsta_on_V2": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V3": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V3": datasets.Value("float64"),
+        "qrsa_on_V3": datasets.Value("float64"),
+        "qrsta_on_V3": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V4": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V4": datasets.Value("float64"),
+        "qrsa_on_V4": datasets.Value("float64"),
+        "qrsta_on_V4": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V5": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V5": datasets.Value("float64"),
+        "qrsa_on_V5": datasets.Value("float64"),
+        "qrsta_on_V5": datasets.Value("float64"),
+        "amplitude_of_jj_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_q_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_r_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_s_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_rprime_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_sprime_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_p_wave_on_V6": datasets.Value("float64"),
+        "amplitude_of_t_wave_on_V6": datasets.Value("float64"),
+        "qrsa_on_V6": datasets.Value("float64"),
+        "qrsta_on_V6": datasets.Value("float64"),
+        "has_arhythmia": datasets.ClassLabel(num_classes=2, names=("no", "yes"))
     }
 }
 features_per_config = {k: datasets.Features(features_types_per_config[k]) for k in features_types_per_config}
@@ -371,4 +653,8 @@ class Arhythmia(datasets.GeneratorBasedBuilder):
         }
         data.loc[:, "type_of_arhythmia"] = data["type_of_arhythmia"].apply(lambda x: label_encoding[x])
 
+        if config == "has_arhythmia":
+            data.loc[:, "type_of_arhytmia"] = data["type_of_arhytmia"].apply(lambda x: 0 if x == 0 else 1)
+            data = data.rename(columns={"type_of_arhytmia": "has_arhythmia"})
+
         return data[list(features_types_per_config[config].keys())]