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Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +from itertools import product +import numpy as np +import xarray as xr +import netCDF4 +import datasets +from pathlib import Path + + +_CITATION = """\ +@ARTICLE{ + 9749916, + author={Sykas, Dimitrios and Sdraka, Maria and Zografakis, Dimitrios and Papoutsis, Ioannis}, + journal={IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing}, + title={A Sentinel-2 multi-year, multi-country benchmark dataset for crop classification and segmentation with deep learning}, + year={2022}, + doi={10.1109/JSTARS.2022.3164771} +} +""" + +_DESCRIPTION = """\ +Sen4AgriNet is a Sentinel-2 based time series multi country benchmark dataset, tailored for +agricultural monitoring applications with Machine and Deep Learning. It is annotated from +farmer declarations collected via the Land Parcel Identification System (LPIS) for harmonizing +country wide labels. These declarations have only recently been made available as open data, +allowing for the first time the labelling of satellite imagery from ground truth data. +We proceed to propose and standardise a new crop type taxonomy across Europe that address +Common Agriculture Policy (CAP) needs, based on the Food and Agriculture Organization (FAO) +Indicative Crop Classification scheme. Sen4AgriNet is the only multi-country, multi-year dataset +that includes all spectral information. It is constructed to cover the period 2016-2020 for +Catalonia and France, while it can be extended to include additional countries. +""" + +_HOMEPAGE = "https://www.sen4agrinet.space.noa.gr/" + +_LICENSE = "MIT License" + +_URL = 'https://huggingface.co/datasets/paren8esis/s4a_test/resolve/main/data' + +# The tiles of Catalonia +CAT_TILES = ['31TBF', '31TCF', '31TCG', '31TDF', '31TDG'] + +# The tiles of France +FR_TILES = ['31TCJ', '31TDK', '31TCL', '31TDM', '31UCP', '31UDR'] + +# The maximum indices for each patch +PATCH_IDX = { + '2019': { + '31TBF': [29, 29], + '31TCF': [29, 27], + '31TCG': [29, 29], + '31TDF': [15, 9], + '31TDG': [29, 29], + '31TCJ': [29, 29], + '31TDK': [29, 29], + '31TCL': [29, 29], + '31TDM': [29, 29], + '31UCP': [29, 29], + '31UDR': [29, 29] + }, + '2020': { + '31TBF': [29, 29], + '31TCF': [29, 27], + '31TCG': [29, 29], + '31TDF': [15, 9], + '31TDG': [29, 29] + } +} + + +class S4A_TEST(datasets.GeneratorBasedBuilder): + VERSION = datasets.Version("0.0.1") + + BUILDER_CONFIGS = [ + datasets.BuilderConfig(name="complete", version=VERSION, description="All Sen4AgriNet data."), + datasets.BuilderConfig(name="tiny", version=VERSION, description="Just three samples for testing."), + datasets.BuilderConfig(name="cat_2019", version=VERSION, description="Sen4AgriNet data for Catalonia 2019."), + ] + + DEFAULT_CONFIG_NAME = "complete" + + def _info(self): + features = datasets.Features( + { + "patch_full_name": datasets.Value("string"), + "patch_year": datasets.Value("string"), + "patch_name": datasets.Value("string"), + "patch_country_code": datasets.Value("string"), + "patch_tile": datasets.Value("string"), + "B01": datasets.Array3D(shape=(None, 61, 61), dtype="uint16"), + "B02": datasets.Array3D(shape=(None, 366, 366), dtype="uint16"), + "B03": datasets.Array3D(shape=(None, 366, 366), dtype="uint16"), + "B04": datasets.Array3D(shape=(None, 366, 366), dtype="uint16"), + "B05": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "B06": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "B07": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "B08": datasets.Array3D(shape=(None, 366, 366), dtype="uint16"), + "B09": datasets.Array3D(shape=(None, 61, 61), dtype="uint16"), + "B10": datasets.Array3D(shape=(None, 61, 61), dtype="uint16"), + "B11": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "B12": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "B8A": datasets.Array3D(shape=(None, 183, 183), dtype="uint16"), + "labels": datasets.Array2D(shape=(366, 366), dtype="uint32"), + "parcels": datasets.Array2D(shape=(366, 366), dtype="uint32"), + "timestamp": datasets.Sequence(datasets.Value("timestamp[ns]")) + } + ) + + return datasets.DatasetInfo( + # This is the description that will appear on the datasets page. + description=_DESCRIPTION, + features=features, + homepage=_HOMEPAGE, + license=_LICENSE, + citation=_CITATION, + ) + + + def _split_generators(self, dl_manager): + root_paths = [] + if self.config.name == "complete": + for year, tile in list(product(['2019'], FR_TILES)) + list(product(['2019', '2020'], CAT_TILES)): + x, y = PATCH_IDX[year][tile] + for x_i in range(x + 1): + for y_i in range(y + 1): + downloaded_paths = dl_manager.download(_URL + f'/{year}' + f'/{tile}' + f'/{year}_{tile}_patch_{str(x_i).zfill(2)}_{str(y_i).zfill(2)}.nc') + root_paths.append(downloaded_paths) + + return [ + datasets.SplitGenerator( + name='complete', + # These kwargs will be passed to _generate_examples + gen_kwargs={ + "root_paths": root_paths, + }, + ), + ] + elif self.config.name == 'tiny': + selected_files = ['2019_31TCF_patch_00_11.nc', '2019_31UCP_patch_01_19.nc', '2020_31TDG_patch_11_17.nc'] + + for file in selected_files: + year, tile = file.split('_')[:2] + + downloaded_paths = dl_manager.download(_URL + f'/{year}' + f'/{tile}' + f'/{file}') + root_paths.append(downloaded_paths) + + return [ + datasets.SplitGenerator( + name='tiny', + # These kwargs will be passed to _generate_examples + gen_kwargs={ + "root_paths": root_paths, + }, + ), + ] + + + # method parameters are unpacked from `gen_kwargs` as given in `_split_generators` + def _generate_examples(self, root_paths): + for file in root_paths: + netcdf = netCDF4.Dataset(file) + + res = { + "patch_full_name": netcdf.patch_full_name, + "patch_year": netcdf.patch_year, + "patch_name": netcdf.patch_name, + "patch_country_code": netcdf.patch_country_code, + "patch_tile": netcdf.patch_tile + } + + time_recorded = False + + for variable in ['B01', 'B02', 'B03', 'B04', 'B05', 'B06', 'B07', 'B08', 'B09', 'B10', 'B11', 'B12', 'B8A', 'labels', 'parcels']: + v = xr.open_dataset(xr.backends.NetCDF4DataStore(netcdf[variable])) + if not time_recorded: + res['timestamp'] = (v.time.values.astype(np.int64) // 10 ** 9).tolist() + time_recorded = True + + res[variable] = getattr(v, variable).values + + key = res['patch_full_name'] + yield key, res + \ No newline at end of file diff --git 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