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Delete hg38.py

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- # Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
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- #
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- # Licensed under the Apache License, Version 2.0 (the "License");
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- # you may not use this file except in compliance with the License.
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- # You may obtain a copy of the License at
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- #
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- # http://www.apache.org/licenses/LICENSE-2.0
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- #
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- # Unless required by applicable law or agreed to in writing, software
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- # distributed under the License is distributed on an "AS IS" BASIS,
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- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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- # See the License for the specific language governing permissions and
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- # limitations under the License.
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- import json
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- import os
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-
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- import datasets
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- import pandas as pd
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-
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- _CITATION = """\
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- CITATION
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- """
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-
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- _DESCRIPTION = """\
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- DESCRIPTION
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- """
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-
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- _HOMEPAGE = "HOMEPAGE"
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-
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- _LICENSE = ""
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-
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-
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- FILES = ["hg38_8k_train.jsonl", "hg38_8k_test.jsonl"]
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-
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-
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- task_list = [
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- "hg38_8k",
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- ]
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-
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-
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- class hg38Config(datasets.BuilderConfig):
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- def __init__(self, **kwargs):
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- super().__init__(version=datasets.Version("1.0.0"), **kwargs)
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-
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-
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- class hg38(datasets.GeneratorBasedBuilder):
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- BUILDER_CONFIGS = [
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- hg38Config(
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- name=task_name,
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- )
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- for task_name in task_list
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- ]
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-
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- def _info(self):
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- return datasets.DatasetInfo(
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- description=_DESCRIPTION,
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- features=datasets.Features(
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- {
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- "chrom":datasets.Value("string"),
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- "start": datasets.Value("int32"),
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- "end": datasets.Value("int32"),
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- "seq": datasets.Value("string"),
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- }
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- ),
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- homepage=_HOMEPAGE,
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- license=_LICENSE,
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- citation=_CITATION,
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- )
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-
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- def _split_generators(self, dl_manager):
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- downloaded_files = dl_manager.download(FILES)
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- return [
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- datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files[0]}),
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- datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": downloaded_files[1]}),
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- ]
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-
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- def _generate_examples(self, filepath):
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- with open(filepath) as jsonl_file:
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- for row, line in enumerate(jsonl_file):
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- data = json.loads(line)
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- yield row, {
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- "chrom": data["chrom"],
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- "start": data["start"],
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- "end": data["end"],
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- "seq": data["seq"],
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- }