| { | |
| "test_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, is_segmentation=True, data_list_key='validation', base_dir=@dataset_dir)", | |
| "validate#dataset": { | |
| "_target_": "Dataset", | |
| "data": "$@test_datalist", | |
| "transform": "@validate#preprocessing" | |
| }, | |
| "validate#key_metric": { | |
| "val_coco": { | |
| "_target_": "scripts.cocometric_ignite.IgniteCocoMetric", | |
| "coco_metric_monai": "$monai.apps.detection.metrics.coco.COCOMetric(classes=['nodule'], iou_list=[0.1], max_detection=[100])", | |
| "output_transform": "$monai.handlers.from_engine(['pred', 'label'])", | |
| "box_key": "box", | |
| "label_key": "label", | |
| "pred_score_key": "label_scores", | |
| "reduce_scalar": false | |
| } | |
| }, | |
| "validate#handlers": [ | |
| { | |
| "_target_": "CheckpointLoader", | |
| "load_path": "$@ckpt_dir + '/model.pt'", | |
| "load_dict": { | |
| "model": "@network" | |
| } | |
| }, | |
| { | |
| "_target_": "StatsHandler", | |
| "iteration_log": false | |
| }, | |
| { | |
| "_target_": "MetricsSaver", | |
| "save_dir": "@output_dir", | |
| "metrics": [ | |
| "val_coco" | |
| ], | |
| "metric_details": [ | |
| "val_coco" | |
| ], | |
| "batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])", | |
| "summary_ops": "*" | |
| } | |
| ], | |
| "initialize": [ | |
| "$setattr(torch.backends.cudnn, 'benchmark', True)" | |
| ], | |
| "run": [ | |
| "$@validate#evaluator.run()" | |
| ] | |
| } | |