modelling_pisco.py

import warnings
import os
import torch
from peft import LoraConfig
from transformers import AutoModelForCausalLM, AutoTokenizer, PreTrainedModel, PretrainedConfig, AutoConfig, GenerationConfig
from jinja2.exceptions import TemplateError


def add_memory_tokens_to_inputs(input_ids: torch.Tensor, attention_mask: torch.Tensor, n_mem_tokens: int, tokenizer):
    """
    Concatenate the input ids with n_mem_tokens mem_tokens and update the corresponding attention mask
    """
    assert len(tokenizer.mem_tokens) == n_mem_tokens, f"{len(tokenizer.mem_tokens)} VS {n_mem_tokens}"
    mem_tokens = torch.stack([tokenizer.mem_token_ids_pt] * input_ids.size(0), 0)
    assert len(mem_tokens.size()) == 2
    assert len(mem_tokens) == input_ids.size(0)
    assert len(mem_tokens[0]) == n_mem_tokens
    #mem_tokens = torch.full((input_ids.size(0), n_mem_tokens), tokenizer.mem_token_id, dtype=torch.long)
    input_ids = torch.cat([input_ids, mem_tokens], dim=1)
    attention_mask = torch.cat([attention_mask, torch.ones(input_ids.size(0), n_mem_tokens)], dim=1)
    return input_ids, attention_mask


class PISCOConfig(PretrainedConfig):

    model_type = "PISCO"
    def __init__(self,
                decoder_model_name: str = "meta-llama/Llama-2-7b-chat-hf",
                compr_rate: int = 16,
                **kwargs):
        super().__init__(**kwargs)

        self.decoder_model_name = decoder_model_name # model name of decoder
        self.compr_rate = compr_rate # compression rate
        self.lora_r = 16
        self.sep = True
        
        
class PISCO(PreTrainedModel):
    config_class = PISCOConfig
    def __init__(self, cfg):
        super().__init__(cfg)
        self.decoder_model_name = cfg.decoder_model_name
        self.sep = cfg.sep
        self.compr_rate = cfg.compr_rate
        
        self.create_tokenizer(cfg)
        
        # Base model config but we modify vocab size since we added tokens (mainly the mem tokens)
        decoder_config = AutoConfig.from_pretrained(cfg.decoder_model_name)
        decoder_config.vocab_size = len(self.tokenizer)
        
        # Initializing placeholder model:
        self.decoder = AutoModelForCausalLM.from_config(decoder_config, 
                                                        attn_implementation='flash_attention_2', 
                                                        torch_dtype=torch.bfloat16)
        
        peft_config = self.get_peft_config(cfg)

        self.adapter_keys = []
        self.decoder.add_adapter(peft_config, 'decoder_adapter')
        self.decoder.set_adapter('decoder_adapter')
        self.adapter_keys.append('decoder_adapter')
        self.decoder.add_adapter(peft_config, 'encoder_adapter')
        self.adapter_keys.append('encoder_adapter')
        
        self.generation_config = GenerationConfig(do_sample=False, top_p=None)

    def create_tokenizer(self, cfg):
        self.tokenizer = AutoTokenizer.from_pretrained(cfg.decoder_model_name, use_fast=True, padding_side='left')
        
        n_mem_tokens = 128 // cfg.compr_rate
        mem_tokens = ['<MEM' + str(i) + '>' for i in range(n_mem_tokens)]
        self.tokenizer.add_special_tokens({'additional_special_tokens': mem_tokens + ['<AE>', '<ENC>', '<SEP>']}) 
        self.tokenizer.mem_tokens = mem_tokens
        
        self.tokenizer.mem_token_ids = [self.tokenizer.convert_tokens_to_ids(elt) for elt in self.tokenizer.mem_tokens]
        self.tokenizer.mem_token_ids_pt = torch.LongTensor(self.tokenizer.mem_token_ids) # required later on for operations on tensors
        
        self.tokenizer.ae_token = '<AE>' # token for autoencoding on decoder side
        self.tokenizer.ae_token_id = self.tokenizer.convert_tokens_to_ids('<AE>')
        self.tokenizer.enc_token = '<ENC>' # token for autoencoding on compressor side
        self.tokenizer.sep_token = '<SEP>' # sep token between document
        self.tokenizer.sep_token_id = self.tokenizer.convert_tokens_to_ids('<SEP>')

        # if pad token exists then use pad token, othrwise bos token
        if self.tokenizer.pad_token_id is None:
            self.tokenizer.pad_token_id = self.tokenizer.bos_token_id

    def set_all_adapters(self):
        if len(self.adapter_keys) > 0:
            self.decoder.set_adapter(self.adapter_keys)

    def get_peft_config(self, cfg: PISCOConfig) -> LoraConfig:
        """
        Builds the peft config
        """
        return LoraConfig(task_type="CAUSAL_LM", r=cfg.lora_r, lora_alpha=2* cfg.lora_r, target_modules='all-linear', lora_dropout=0.1)
            
    def compress(self, enc_input_ids, enc_attention_mask):
        return self.compr_decoder(enc_input_ids, enc_attention_mask)

    def replace_emb(self, compressed_embs, dec_input_ids):
        """
        Create an input embedding vector combining the compressed_embs and the dec_input_ids
        """
        indices = range(0, compressed_embs.size(0) + 1, self.generation_top_k)            
        
        input_embeds = self.decoder.get_input_embeddings()(dec_input_ids)
        num_embs = compressed_embs.size(1)
        if self.sep:
            slot_len = num_embs + 1
        else:
            slot_len = num_embs
        # get first mem_token indices
        first_mem_token_indices = torch.argmax((dec_input_ids == self.tokenizer.mem_token_ids[0]).int(), dim=1)
        batch_size = input_embeds.size(0)
        # for each example in batch, replace them with compressed embeddings
        for i in range(batch_size):
            for j in range(indices[i], indices[i + 1]):
                start_idx = first_mem_token_indices[i].item() + (j-indices[i]) * slot_len
                assert input_embeds[i, start_idx:start_idx + num_embs, :].size() == compressed_embs[j].size(), \
                    f"{input_embeds[i, start_idx:start_idx + num_embs, :].size()} VS {compressed_embs[j].size()}"
                input_embeds[i, start_idx:start_idx + num_embs, :] = compressed_embs[j]

        return input_embeds

    def compr_decoder(self, input_ids, attention_mask):
        """
        Compression using the decoder
        """
        assert input_ids.size() == attention_mask.size(), f"{input_ids.size()} vs {attention_mask.size()}"
        
        # Switch adapter if we are training two different ones:
        if 'encoder_adapter' in self.adapter_keys:
            self.decoder.set_adapter('encoder_adapter')
            
        emb = self.decoder(input_ids=input_ids,
                           attention_mask=attention_mask,
                           output_hidden_states=True).hidden_states[-1]
        mask = torch.isin(input_ids, self.tokenizer.mem_token_ids_pt.to(input_ids.device))
        return emb[mask].reshape(emb.size(0), -1, emb.size(-1))
    
    def prepare_encoder_inputs_to_decoder(self, texts, max_length):
        inp_enc = [self.tokenizer.enc_token + self.tokenizer.bos_token + text + self.tokenizer.eos_token for text in texts]
        inp_enc = self.tokenizer(inp_enc, return_tensors='pt', padding="longest", max_length=max_length+3, truncation=True, add_special_tokens=False)
        num_mem_tokens = 128 // self.compr_rate  # hardcode size
        assert num_mem_tokens == len(self.tokenizer.mem_tokens)
        inp_enc['input_ids'], inp_enc['attention_mask'] = add_memory_tokens_to_inputs(inp_enc['input_ids'], 
                                                                                        inp_enc['attention_mask'], 
                                                                                        num_mem_tokens, 
                                                                                        tokenizer=self.tokenizer)
        
        return inp_enc
    
    def prepare_encoder_inputs(self, texts, max_length):
        return self.prepare_encoder_inputs_to_decoder(texts, max_length)
        
    def forward(self,
                enc_input_ids: torch.LongTensor = None,
                enc_attention_mask: torch.LongTensor = None,
                dec_input_ids: torch.LongTensor = None,
                dec_attention_mask: torch.LongTensor = None,
                labels: torch.LongTensor = None):
        """
        enc_input_ids: stores the contexts, should be flattened from all queries before input, can be of shape:
            - (batch_size*generation_top_k, enc_token_length)
            - (batch_size, generation_top_k, enc_token_length)
        enc_attention_mask: attention mask of enc_input_ids, same shape as enc_input_ids
        dec_input_ids: stores the prompts (including mem tokens), dimention (batch_size, dec_token_length)
        dec_attention_mask: attention mask of dec_input_ids
        """ 
        assert enc_input_ids.size() == enc_attention_mask.size(), f"{enc_input_ids.size()} vs {enc_attention_mask.size()}"
        
        if len(enc_input_ids.size()) == 3: # likely from bergen: we just flatten all of this to perform encoding in one batch
            batch_size, top_k, seq_length = enc_input_ids.size()
            enc_input_ids = enc_input_ids.view(batch_size * top_k, seq_length)
            enc_attention_mask = enc_attention_mask.view(batch_size * top_k, seq_length)
        
        # Here, we should have top_k times more elements in enc_input_ids than in dec_input_ids
        assert enc_input_ids.size(0) == dec_input_ids.size(0) * self.generation_top_k, \
            f"{enc_input_ids.size(0)} VS {dec_input_ids.size(0)} with generation_top_k={self.generation_top_k}"
            
        # Perform compression with gradient tracking
        compressed_embs = self.compress(enc_input_ids, enc_attention_mask)
        inputs_embeds = self.replace_emb(compressed_embs, dec_input_ids)

        # decoding
        if 'decoder_adapter' in self.adapter_keys:
            self.decoder.set_adapter('decoder_adapter')

        decoder_outputs = self.decoder(inputs_embeds=inputs_embeds, attention_mask=dec_attention_mask, labels=labels)

        # At end of forward, we need to activate all adapters so that they are both trained...
        self.set_all_adapters()

        return {"loss": decoder_outputs.loss, "logits": decoder_outputs.logits}
    
    def generate_from_text(self, questions: list[str], documents: list[list[str]], max_new_tokens: int = 128) -> list[str]:
        """
        Generates answers from documents (via compression then decoding)
        questions: list of string
        documents: list of list of strings (they should all be of equal length: the nb of doc for each question)
        """
        self.generation_top_k = len(documents[0])
        assert len(documents) == len(questions)
        assert all([len(context) == len(documents[0]) for context in documents])
        flat_documents = sum(documents, [])
        
        model_input = {}
        
        # Creating encoder inputs:
        input_encoder = self.prepare_encoder_inputs(flat_documents, max_length=128)
        device = self.decoder.device
        model_input['enc_input_ids'], model_input['enc_attention_mask'] = input_encoder['input_ids'].to(device), input_encoder['attention_mask'].to(device)
        
        # Creating decoder inputs
        instr = [self.blend_prompt_and_memory_tokens(query=q) for q in questions]
        inp_dec = self.tokenizer(instr, return_tensors='pt', padding="longest", add_special_tokens=False, truncation=True,  max_length=2048)
        model_input['dec_input_ids'], model_input['dec_attention_mask'] = inp_dec['input_ids'].to(device), inp_dec['attention_mask'].to(device)
        
        # Generation
        return self.generate(model_input, max_new_tokens=max_new_tokens)
    
    def generate_from_compressed_documents_and_questions(self, questions: list[str], compressed_documents: torch.Tensor, max_new_tokens: int = 128) -> list[str]:
        """
        Generates answers from compressed documents
        questions: list of string
        compressed_documents: torch tensor, its first dimension should be a multiple of len(questions)
        """
        self.generation_top_k = compressed_documents.size(0) // len(questions)
        assert compressed_documents.size(0) % self.generation_top_k == 0, f"{compressed_documents.size(0)} {self.generation_top_k}"
        
        # Creating decoder inputs
        instr = [self.blend_prompt_and_memory_tokens(query=q) for q in questions]
        inp_dec = self.tokenizer(instr, return_tensors='pt', padding="longest", add_special_tokens=False, truncation=True,  max_length=2048)
        device = self.decoder.device
        dec_input_ids, dec_attention_mask = inp_dec['input_ids'].to(device), inp_dec['attention_mask'].to(device)

        # Creating input decoder embeddings from prompt + compressed documents
        inputs_embeds = self.replace_emb(compressed_documents, dec_input_ids)
        
        # Activating decoder generator:
        if 'decoder_adapter' in self.adapter_keys:
            self.decoder.set_adapter('decoder_adapter')
            
        output_ids = self.decoder.generate(
            inputs_embeds=inputs_embeds,
            attention_mask=dec_attention_mask,
            generation_config=self.generation_config,
            max_new_tokens=max_new_tokens
            )
        
        # de-tokenizing
        return self.tokenizer.batch_decode(output_ids, skip_special_tokens=True)
        
    def compress_documents(self, documents: list[str]) -> torch.Tensor:
        """
        Compress a list of documents
        """
        input_encoder = self.prepare_encoder_inputs(documents, max_length=128)
        enc_input_ids = input_encoder['input_ids'].to(self.decoder.device)
        attention_mask = input_encoder['attention_mask'].to(self.decoder.device)
        return self.compress(enc_input_ids=enc_input_ids, enc_attention_mask=attention_mask)

    def generate(self, model_input, max_new_tokens=128):
        """
        Generation pipeline including compression + decoding from compressed
        """

        enc_input_ids, enc_attention_mask, dec_input_ids, dec_attention_mask = model_input['enc_input_ids'], model_input['enc_attention_mask'], model_input['dec_input_ids'], model_input['dec_attention_mask']
        
        assert enc_input_ids.size() == enc_attention_mask.size()
        
        if len(enc_input_ids.size()) == 3: # likely from bergen: we just flatten all of this to perform encoding in one batch
            batch_size, top_k, seq_length = enc_input_ids.size()
            enc_input_ids = enc_input_ids.view(batch_size * top_k, seq_length)
            enc_attention_mask = enc_attention_mask.view(batch_size * top_k, seq_length)
            
        # Here, we should have top_k times more elements in enc_input_ids than in dec_input_ids
        assert enc_input_ids.size(0) == dec_input_ids.size(0) * self.generation_top_k, \
            f"{enc_input_ids.size(0)} VS {dec_input_ids.size(0)} with generation_top_k={self.generation_top_k}"
            
        compressed_embs = self.compress(enc_input_ids, enc_attention_mask)
        inputs_embeds = self.replace_emb(compressed_embs, dec_input_ids)
        
        if 'decoder_adapter' in self.adapter_keys:
            self.decoder.set_adapter('decoder_adapter') 
            
        output_ids = self.decoder.generate(
            inputs_embeds=inputs_embeds,
            attention_mask=dec_attention_mask,
            generation_config=self.generation_config,
            max_new_tokens=max_new_tokens
            )

        return self.tokenizer.batch_decode(output_ids, skip_special_tokens=True)
        
    def blend_prompt_and_memory_tokens(self, query: str):
        """
        Takes care of blending the prompt with the memory tokens:
        Also returns, if a label is provided, the position of the first token index of the label (for loss comp later on)
        """        
        mem_tokens_str = ''.join(self.tokenizer.mem_tokens) + self.tokenizer.sep_token
        
        # proper names for "eval" call, don't remove these lines
        docs = mem_tokens_str * self.generation_top_k
        question = query
        
        prompt_system = 'You are a helpful assistant. Your task is to extract relevant information from provided documents and to answer to questions as briefly as possible.'
        prompt_user = f"Background:\n{docs}\n\nQuestion:{question}"
        
        # Prepare the messages with system and user roles
        messages = [
            {"role": "system", "content": prompt_system},
            {"role": "user", "content": prompt_user.replace(':\ ', ': ')}
        ]

        # Attempt to apply the system role and catch if it's not supported
        try:
            prompt = self.tokenizer.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
            
        except TemplateError as e:
            # Catch the error related to system role and handle it (e.g. gemma)
            if "System role not supported" in str(e):
                # Remove system role and proceed with only the user role
                messages = [{"role": "user", "content": messages[0]['content'] + '\n' + messages[1]['content']}]
                # Apply template again without system role
                prompt = self.tokenizer.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
            else:
                # Re-raise the exception if it's unrelated to system role
                raise e

        return prompt