canergen commited on
Commit
1940b77
·
verified ·
1 Parent(s): f71acbc

Upload folder using huggingface_hub

Browse files
OnClass.data-00000-of-00001 CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:64d2a6532a08c47a72b330797c072985cd0a2952aa618aa2e097cb888f217dd6
3
  size 27239224
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:903c8ea7e7064ed27c7a76621db5e401ad38d2f7260d730370515b4877422869
3
  size 27239224
OnClass.index CHANGED
Binary files a/OnClass.index and b/OnClass.index differ
 
OnClass.meta CHANGED
Binary files a/OnClass.meta and b/OnClass.meta differ
 
OnClass.npz CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:8f31a6b0e4823ebdd415e89ae16923ee5e234ddb90c2749a94fecf42f497067e
3
- size 144111423
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b84e3072e3a108c2426967011fafa2a9c9cb9c424536446c5e8e256a954cd216
3
+ size 144111433
accuracies.json CHANGED
@@ -1,4 +1,4 @@
1
  {
2
- "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 11274 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 9683 | 0.59 | 0.80 | 0.82 | 0.76 | 0.00 | 0.58 | 0.44 | 0.58 | 0.80 |\n| CD8-positive, alpha-beta T cell | 7620 | 0.69 | 0.79 | 0.81 | 0.75 | 0.00 | 0.70 | 0.55 | 0.66 | 0.80 |\n| neutrophil | 7005 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.95 | 0.95 | 0.96 | 0.99 |\n| macrophage | 6828 | 0.83 | 0.85 | 0.91 | 0.83 | 0.00 | 0.71 | 0.74 | 0.76 | 0.90 |\n| plasma cell | 2767 | 0.97 | 0.98 | 0.97 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| monocyte | 2633 | 0.55 | 0.40 | 0.76 | 0.47 | 0.00 | 0.27 | 0.47 | 0.55 | 0.63 |\n| classical monocyte | 1789 | 0.62 | 0.62 | 0.75 | 0.50 | 0.00 | 0.55 | 0.57 | 0.67 | 0.71 |\n| erythrocyte | 1509 | 0.97 | 0.97 | 0.97 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| natural killer cell | 1406 | 0.71 | 0.74 | 0.76 | 0.69 | 0.00 | 0.74 | 0.68 | 0.70 | 0.75 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 995 | 0.23 | 0.05 | 0.27 | 0.09 | 0.00 | 0.22 | 0.21 | 0.31 | 0.26 |\n| T cell | 599 | 0.46 | 0.34 | 0.53 | 0.13 | 0.00 | 0.26 | 0.31 | 0.43 | 0.53 |\n| mast cell | 575 | 0.79 | 0.85 | 0.94 | 0.84 | 0.00 | 0.90 | 0.90 | 0.91 | 0.93 |\n| intermediate monocyte | 551 | 0.31 | 0.15 | 0.53 | 0.12 | 0.00 | 0.26 | 0.32 | 0.43 | 0.48 |\n| mature NK T cell | 548 | 0.53 | 0.56 | 0.62 | 0.36 | 0.00 | 0.41 | 0.41 | 0.48 | 0.61 |\n| mononuclear phagocyte | 556 | 0.62 | 0.00 | 0.77 | 0.16 | 0.00 | 0.13 | 0.61 | 0.58 | 0.69 |\n| CD4-positive, alpha-beta thymocyte | 460 | 0.44 | 0.01 | 0.59 | 0.20 | 0.00 | 0.35 | 0.31 | 0.43 | 0.61 |\n| regulatory T cell | 294 | 0.32 | 0.04 | 0.36 | 0.11 | 0.00 | 0.28 | 0.26 | 0.37 | 0.43 |\n| hematopoietic precursor cell | 198 | 0.53 | 0.65 | 0.79 | 0.66 | 0.00 | 0.60 | 0.53 | 0.58 | 0.76 |\n| gamma-delta T cell | 192 | 0.43 | 0.38 | 0.77 | 0.08 | 0.00 | 0.55 | 0.54 | 0.52 | 0.76 |\n| basophil | 165 | 0.48 | 0.12 | 0.90 | 0.45 | 0.00 | 0.76 | 0.68 | 0.78 | 0.84 |\n| tissue-resident macrophage | 128 | 0.62 | 0.00 | 0.83 | 0.28 | 0.00 | 0.28 | 0.59 | 0.55 | 0.72 |\n| non-classical monocyte | 114 | 0.25 | 0.33 | 0.44 | 0.06 | 0.00 | 0.23 | 0.21 | 0.36 | 0.52 |\n| activated CD8-positive, alpha-beta T cell | 112 | 0.31 | 0.02 | 0.39 | 0.05 | 0.00 | 0.18 | 0.23 | 0.29 | 0.48 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 109 | 0.11 | 0.00 | 0.40 | 0.07 | 0.00 | 0.22 | 0.13 | 0.16 | 0.23 |\n| myeloid leukocyte | 87 | 0.34 | 0.00 | 0.66 | 0.15 | 0.00 | 0.09 | 0.20 | 0.22 | 0.54 |\n| erythroid progenitor cell | 106 | 0.66 | 0.70 | 0.72 | 0.64 | 0.00 | 0.59 | 0.70 | 0.69 | 0.74 |\n| innate lymphoid cell | 85 | 0.24 | 0.18 | 0.33 | 0.25 | 0.00 | 0.21 | 0.17 | 0.26 | 0.35 |\n| hematopoietic stem cell | 72 | 0.76 | 0.71 | 0.79 | 0.71 | 0.00 | 0.67 | 0.68 | 0.70 | 0.81 |\n| granulocyte | 72 | 0.35 | 0.03 | 0.65 | 0.44 | 0.00 | 0.17 | 0.28 | 0.32 | 0.66 |\n| CD8-positive, alpha-beta thymocyte | 69 | 0.47 | 0.03 | 0.38 | 0.36 | 0.00 | 0.25 | 0.23 | 0.38 | 0.65 |\n| activated CD4-positive, alpha-beta T cell | 63 | 0.08 | 0.00 | 0.18 | 0.06 | 0.00 | 0.09 | 0.11 | 0.14 | 0.24 |\n| myeloid dendritic cell | 45 | 0.14 | 0.22 | 0.39 | 0.23 | 0.00 | 0.10 | 0.13 | 0.15 | 0.22 |\n| platelet | 50 | 0.66 | 0.94 | 0.97 | 0.94 | 0.00 | 0.57 | 0.77 | 0.73 | 0.83 |\n| common myeloid progenitor | 41 | 0.65 | 0.63 | 0.71 | 0.43 | 0.00 | 0.57 | 0.60 | 0.71 | 0.80 |\n| thymocyte | 46 | 0.00 | 0.00 | 0.35 | 0.37 | 0.00 | 0.21 | 0.21 | 0.46 | 0.68 |\n| microglial cell | 35 | 0.11 | 0.00 | 0.35 | 0.09 | 0.00 | 0.08 | 0.14 | 0.14 | 0.27 |\n| colon macrophage | 41 | 0.24 | 0.00 | 0.72 | 0.07 | 0.00 | 0.15 | 0.28 | 0.32 | 0.59 |\n| leukocyte | 15 | 0.12 | 0.00 | 0.05 | 0.11 | 0.00 | 0.00 | 0.09 | 0.15 | 0.20 |\n| plasmacytoid dendritic cell | 7 | 0.46 | 0.20 | 0.55 | 0.20 | 0.00 | 0.04 | 0.25 | 0.21 | 0.35 |\n| hematopoietic cell | 8 | 0.64 | 0.00 | 0.77 | 0.77 | 0.00 | 0.09 | 0.94 | 0.48 | 0.80 |\n| myeloid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.17 | 0.06 | 0.00 |\n| Langerhans cell | 6 | 0.00 | 0.40 | 0.73 | 0.17 | 0.00 | 0.14 | 0.34 | 0.25 | 0.62 |\n| T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| erythroid lineage cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
- "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 103198 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 87406 | 0.59 | 0.79 | 0.87 | 0.81 | 0.00 | 0.60 | 0.44 | 0.58 | 0.83 |\n| CD8-positive, alpha-beta T cell | 68602 | 0.69 | 0.78 | 0.87 | 0.81 | 0.00 | 0.69 | 0.56 | 0.66 | 0.81 |\n| neutrophil | 62506 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.96 | 0.96 | 0.99 |\n| macrophage | 62165 | 0.82 | 0.84 | 0.94 | 0.87 | 0.00 | 0.76 | 0.74 | 0.77 | 0.92 |\n| plasma cell | 24570 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| monocyte | 23115 | 0.54 | 0.33 | 0.85 | 0.67 | 0.00 | 0.51 | 0.46 | 0.57 | 0.71 |\n| classical monocyte | 16410 | 0.64 | 0.59 | 0.84 | 0.70 | 0.00 | 0.67 | 0.59 | 0.68 | 0.78 |\n| erythrocyte | 13099 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| natural killer cell | 12822 | 0.72 | 0.74 | 0.85 | 0.79 | 0.00 | 0.74 | 0.69 | 0.73 | 0.77 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 8832 | 0.23 | 0.05 | 0.46 | 0.24 | 0.00 | 0.29 | 0.23 | 0.32 | 0.39 |\n| T cell | 5687 | 0.49 | 0.29 | 0.69 | 0.36 | 0.00 | 0.43 | 0.34 | 0.44 | 0.61 |\n| mast cell | 5640 | 0.79 | 0.86 | 0.97 | 0.91 | 0.00 | 0.94 | 0.91 | 0.92 | 0.95 |\n| intermediate monocyte | 4926 | 0.32 | 0.12 | 0.69 | 0.50 | 0.00 | 0.38 | 0.34 | 0.45 | 0.54 |\n| mature NK T cell | 4842 | 0.52 | 0.50 | 0.74 | 0.52 | 0.00 | 0.47 | 0.42 | 0.51 | 0.63 |\n| mononuclear phagocyte | 4780 | 0.60 | 0.00 | 0.93 | 0.41 | 0.00 | 0.86 | 0.59 | 0.59 | 0.90 |\n| CD4-positive, alpha-beta thymocyte | 4225 | 0.45 | 0.00 | 0.70 | 0.42 | 0.00 | 0.53 | 0.36 | 0.46 | 0.70 |\n| regulatory T cell | 2355 | 0.28 | 0.04 | 0.55 | 0.27 | 0.00 | 0.29 | 0.25 | 0.35 | 0.48 |\n| hematopoietic precursor cell | 1942 | 0.54 | 0.62 | 0.85 | 0.76 | 0.00 | 0.63 | 0.61 | 0.63 | 0.81 |\n| gamma-delta T cell | 1782 | 0.45 | 0.30 | 0.84 | 0.34 | 0.00 | 0.62 | 0.55 | 0.52 | 0.77 |\n| basophil | 1504 | 0.44 | 0.01 | 0.94 | 0.73 | 0.00 | 0.87 | 0.68 | 0.79 | 0.90 |\n| tissue-resident macrophage | 1219 | 0.58 | 0.00 | 0.89 | 0.59 | 0.00 | 0.49 | 0.62 | 0.57 | 0.76 |\n| non-classical monocyte | 1170 | 0.28 | 0.34 | 0.57 | 0.33 | 0.00 | 0.28 | 0.30 | 0.43 | 0.61 |\n| activated CD8-positive, alpha-beta T cell | 1029 | 0.32 | 0.00 | 0.49 | 0.14 | 0.00 | 0.49 | 0.27 | 0.33 | 0.65 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 947 | 0.11 | 0.00 | 0.62 | 0.30 | 0.00 | 0.29 | 0.15 | 0.16 | 0.31 |\n| myeloid leukocyte | 907 | 0.29 | 0.00 | 0.75 | 0.34 | 0.00 | 0.29 | 0.26 | 0.27 | 0.70 |\n| erythroid progenitor cell | 865 | 0.63 | 0.57 | 0.82 | 0.82 | 0.00 | 0.64 | 0.76 | 0.74 | 0.78 |\n| innate lymphoid cell | 886 | 0.25 | 0.10 | 0.57 | 0.40 | 0.00 | 0.37 | 0.23 | 0.28 | 0.45 |\n| hematopoietic stem cell | 786 | 0.75 | 0.69 | 0.87 | 0.82 | 0.00 | 0.74 | 0.78 | 0.85 | 0.88 |\n| granulocyte | 697 | 0.30 | 0.00 | 0.74 | 0.62 | 0.00 | 0.24 | 0.31 | 0.34 | 0.76 |\n| CD8-positive, alpha-beta thymocyte | 662 | 0.40 | 0.01 | 0.50 | 0.38 | 0.00 | 0.36 | 0.31 | 0.42 | 0.74 |\n| activated CD4-positive, alpha-beta T cell | 509 | 0.06 | 0.00 | 0.46 | 0.23 | 0.00 | 0.13 | 0.12 | 0.14 | 0.31 |\n| myeloid dendritic cell | 523 | 0.14 | 0.08 | 0.57 | 0.41 | 0.00 | 0.17 | 0.21 | 0.24 | 0.31 |\n| platelet | 444 | 0.73 | 0.87 | 0.96 | 0.96 | 0.00 | 0.60 | 0.83 | 0.80 | 0.93 |\n| common myeloid progenitor | 415 | 0.58 | 0.39 | 0.84 | 0.77 | 0.00 | 0.69 | 0.78 | 0.89 | 0.89 |\n| thymocyte | 409 | 0.00 | 0.00 | 0.52 | 0.38 | 0.00 | 0.29 | 0.26 | 0.59 | 0.92 |\n| microglial cell | 352 | 0.11 | 0.00 | 0.63 | 0.23 | 0.00 | 0.22 | 0.21 | 0.22 | 0.47 |\n| colon macrophage | 286 | 0.18 | 0.00 | 0.82 | 0.40 | 0.00 | 0.30 | 0.27 | 0.33 | 0.69 |\n| leukocyte | 171 | 0.07 | 0.00 | 0.46 | 0.14 | 0.00 | 0.35 | 0.27 | 0.20 | 0.41 |\n| plasmacytoid dendritic cell | 91 | 0.54 | 0.41 | 0.80 | 0.66 | 0.00 | 0.12 | 0.64 | 0.47 | 0.73 |\n| hematopoietic cell | 90 | 0.64 | 0.00 | 0.95 | 0.77 | 0.00 | 0.12 | 0.96 | 0.60 | 0.87 |\n| myeloid cell | 79 | 0.00 | 0.00 | 0.34 | 0.07 | 0.00 | 0.23 | 0.55 | 0.37 | 0.86 |\n| Langerhans cell | 70 | 0.01 | 0.02 | 0.78 | 0.39 | 0.00 | 0.18 | 0.36 | 0.32 | 0.63 |\n| T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 1.00 | 0.86 | 0.80 |\n| erythroid lineage cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.14 | 0.80 | 0.00 |"
4
  }
 
1
  {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 11273 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.94 | 0.99 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 9709 | 0.59 | 0.80 | 0.82 | 0.77 | 0.00 | 0.40 | 0.44 | 0.60 | 0.79 |\n| CD8-positive, alpha-beta T cell | 7592 | 0.71 | 0.79 | 0.81 | 0.75 | 0.00 | 0.73 | 0.56 | 0.67 | 0.81 |\n| neutrophil | 6979 | 0.94 | 0.98 | 0.97 | 0.98 | 0.00 | 0.92 | 0.95 | 0.95 | 0.98 |\n| macrophage | 6824 | 0.83 | 0.85 | 0.91 | 0.83 | 0.00 | 0.71 | 0.73 | 0.76 | 0.89 |\n| plasma cell | 2779 | 0.97 | 0.98 | 0.97 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| monocyte | 2605 | 0.50 | 0.41 | 0.76 | 0.47 | 0.00 | 0.33 | 0.44 | 0.56 | 0.58 |\n| classical monocyte | 1806 | 0.64 | 0.62 | 0.74 | 0.48 | 0.00 | 0.56 | 0.55 | 0.68 | 0.71 |\n| erythrocyte | 1512 | 0.97 | 0.97 | 0.97 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| natural killer cell | 1401 | 0.70 | 0.74 | 0.75 | 0.70 | 0.00 | 0.67 | 0.65 | 0.72 | 0.75 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 1006 | 0.25 | 0.05 | 0.31 | 0.09 | 0.00 | 0.21 | 0.22 | 0.31 | 0.29 |\n| T cell | 604 | 0.42 | 0.33 | 0.54 | 0.17 | 0.00 | 0.25 | 0.34 | 0.45 | 0.52 |\n| mast cell | 590 | 0.81 | 0.84 | 0.92 | 0.81 | 0.00 | 0.89 | 0.89 | 0.91 | 0.92 |\n| intermediate monocyte | 551 | 0.29 | 0.14 | 0.54 | 0.18 | 0.00 | 0.24 | 0.31 | 0.46 | 0.49 |\n| mature NK T cell | 545 | 0.53 | 0.56 | 0.62 | 0.35 | 0.00 | 0.42 | 0.41 | 0.49 | 0.62 |\n| mononuclear phagocyte | 556 | 0.57 | 0.00 | 0.75 | 0.15 | 0.00 | 0.03 | 0.59 | 0.57 | 0.63 |\n| CD4-positive, alpha-beta thymocyte | 456 | 0.41 | 0.07 | 0.60 | 0.28 | 0.00 | 0.19 | 0.33 | 0.42 | 0.57 |\n| regulatory T cell | 296 | 0.27 | 0.05 | 0.36 | 0.12 | 0.00 | 0.23 | 0.28 | 0.38 | 0.49 |\n| hematopoietic precursor cell | 208 | 0.51 | 0.69 | 0.77 | 0.67 | 0.00 | 0.45 | 0.50 | 0.58 | 0.67 |\n| gamma-delta T cell | 193 | 0.66 | 0.40 | 0.77 | 0.26 | 0.00 | 0.38 | 0.57 | 0.50 | 0.79 |\n| basophil | 175 | 0.53 | 0.12 | 0.80 | 0.31 | 0.00 | 0.73 | 0.72 | 0.79 | 0.81 |\n| tissue-resident macrophage | 128 | 0.68 | 0.00 | 0.83 | 0.21 | 0.00 | 0.24 | 0.67 | 0.52 | 0.76 |\n| non-classical monocyte | 114 | 0.28 | 0.34 | 0.47 | 0.02 | 0.00 | 0.17 | 0.22 | 0.36 | 0.53 |\n| activated CD8-positive, alpha-beta T cell | 119 | 0.34 | 0.00 | 0.38 | 0.04 | 0.00 | 0.09 | 0.25 | 0.38 | 0.39 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 112 | 0.13 | 0.00 | 0.35 | 0.12 | 0.00 | 0.20 | 0.13 | 0.16 | 0.27 |\n| myeloid leukocyte | 86 | 0.29 | 0.00 | 0.67 | 0.13 | 0.00 | 0.05 | 0.20 | 0.23 | 0.58 |\n| erythroid progenitor cell | 107 | 0.64 | 0.65 | 0.67 | 0.60 | 0.00 | 0.61 | 0.65 | 0.67 | 0.72 |\n| innate lymphoid cell | 83 | 0.17 | 0.18 | 0.31 | 0.25 | 0.00 | 0.26 | 0.17 | 0.23 | 0.33 |\n| hematopoietic stem cell | 72 | 0.74 | 0.72 | 0.77 | 0.71 | 0.00 | 0.70 | 0.75 | 0.80 | 0.80 |\n| granulocyte | 70 | 0.19 | 0.03 | 0.61 | 0.37 | 0.00 | 0.11 | 0.27 | 0.26 | 0.43 |\n| CD8-positive, alpha-beta thymocyte | 66 | 0.47 | 0.03 | 0.48 | 0.31 | 0.00 | 0.36 | 0.24 | 0.31 | 0.62 |\n| activated CD4-positive, alpha-beta T cell | 60 | 0.07 | 0.00 | 0.24 | 0.03 | 0.00 | 0.08 | 0.12 | 0.14 | 0.28 |\n| myeloid dendritic cell | 44 | 0.14 | 0.14 | 0.33 | 0.32 | 0.00 | 0.13 | 0.12 | 0.14 | 0.21 |\n| platelet | 52 | 0.60 | 0.92 | 0.97 | 0.94 | 0.00 | 0.57 | 0.82 | 0.76 | 0.85 |\n| common myeloid progenitor | 39 | 0.00 | 0.54 | 0.67 | 0.32 | 0.00 | 0.51 | 0.61 | 0.72 | 0.74 |\n| thymocyte | 43 | 0.00 | 0.00 | 0.46 | 0.32 | 0.00 | 0.28 | 0.21 | 0.46 | 0.72 |\n| microglial cell | 29 | 0.09 | 0.00 | 0.41 | 0.06 | 0.00 | 0.09 | 0.13 | 0.12 | 0.24 |\n| colon macrophage | 41 | 0.30 | 0.00 | 0.76 | 0.00 | 0.00 | 0.04 | 0.25 | 0.43 | 0.61 |\n| leukocyte | 15 | 0.12 | 0.00 | 0.05 | 0.11 | 0.00 | 0.02 | 0.05 | 0.16 | 0.20 |\n| plasmacytoid dendritic cell | 7 | 0.00 | 0.25 | 0.55 | 0.15 | 0.00 | 0.07 | 0.40 | 0.21 | 0.44 |\n| hematopoietic cell | 8 | 0.00 | 0.22 | 0.77 | 0.93 | 0.00 | 0.03 | 1.00 | 0.50 | 1.00 |\n| myeloid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.12 | 0.00 |\n| Langerhans cell | 9 | 0.00 | 0.33 | 0.75 | 0.15 | 0.00 | 0.02 | 0.40 | 0.29 | 0.89 |\n| T follicular helper cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| erythroid lineage cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 103201 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.94 | 0.99 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 87379 | 0.60 | 0.79 | 0.87 | 0.82 | 0.00 | 0.48 | 0.44 | 0.60 | 0.82 |\n| CD8-positive, alpha-beta T cell | 68634 | 0.71 | 0.79 | 0.87 | 0.82 | 0.00 | 0.74 | 0.57 | 0.67 | 0.82 |\n| neutrophil | 62532 | 0.95 | 0.98 | 0.98 | 0.98 | 0.00 | 0.92 | 0.95 | 0.95 | 0.98 |\n| macrophage | 62168 | 0.82 | 0.84 | 0.94 | 0.87 | 0.00 | 0.77 | 0.73 | 0.76 | 0.92 |\n| plasma cell | 24558 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| monocyte | 23143 | 0.50 | 0.32 | 0.84 | 0.68 | 0.00 | 0.47 | 0.47 | 0.57 | 0.67 |\n| classical monocyte | 16393 | 0.65 | 0.59 | 0.84 | 0.70 | 0.00 | 0.65 | 0.57 | 0.68 | 0.77 |\n| erythrocyte | 13096 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.96 | 0.97 | 0.98 |\n| natural killer cell | 12826 | 0.72 | 0.74 | 0.85 | 0.81 | 0.00 | 0.70 | 0.68 | 0.74 | 0.77 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 8821 | 0.26 | 0.05 | 0.46 | 0.23 | 0.00 | 0.26 | 0.24 | 0.32 | 0.38 |\n| T cell | 5682 | 0.44 | 0.29 | 0.69 | 0.36 | 0.00 | 0.38 | 0.35 | 0.45 | 0.61 |\n| mast cell | 5625 | 0.83 | 0.86 | 0.95 | 0.93 | 0.00 | 0.94 | 0.89 | 0.92 | 0.95 |\n| intermediate monocyte | 4926 | 0.30 | 0.10 | 0.69 | 0.45 | 0.00 | 0.36 | 0.34 | 0.46 | 0.55 |\n| mature NK T cell | 4845 | 0.53 | 0.50 | 0.74 | 0.57 | 0.00 | 0.50 | 0.41 | 0.51 | 0.65 |\n| mononuclear phagocyte | 4780 | 0.57 | 0.00 | 0.91 | 0.42 | 0.00 | 0.90 | 0.58 | 0.56 | 0.90 |\n| CD4-positive, alpha-beta thymocyte | 4229 | 0.42 | 0.01 | 0.72 | 0.49 | 0.00 | 0.63 | 0.36 | 0.43 | 0.69 |\n| regulatory T cell | 2353 | 0.26 | 0.03 | 0.55 | 0.28 | 0.00 | 0.24 | 0.26 | 0.38 | 0.48 |\n| hematopoietic precursor cell | 1932 | 0.51 | 0.63 | 0.85 | 0.78 | 0.00 | 0.48 | 0.56 | 0.62 | 0.75 |\n| gamma-delta T cell | 1783 | 0.66 | 0.28 | 0.86 | 0.39 | 0.00 | 0.52 | 0.58 | 0.50 | 0.82 |\n| basophil | 1494 | 0.47 | 0.02 | 0.88 | 0.76 | 0.00 | 0.84 | 0.69 | 0.81 | 0.89 |\n| tissue-resident macrophage | 1219 | 0.65 | 0.00 | 0.89 | 0.60 | 0.00 | 0.43 | 0.67 | 0.53 | 0.77 |\n| non-classical monocyte | 1170 | 0.30 | 0.32 | 0.59 | 0.31 | 0.00 | 0.22 | 0.28 | 0.42 | 0.57 |\n| activated CD8-positive, alpha-beta T cell | 1023 | 0.37 | 0.00 | 0.48 | 0.17 | 0.00 | 0.38 | 0.28 | 0.40 | 0.66 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 944 | 0.14 | 0.00 | 0.62 | 0.35 | 0.00 | 0.25 | 0.15 | 0.17 | 0.32 |\n| myeloid leukocyte | 908 | 0.25 | 0.00 | 0.74 | 0.31 | 0.00 | 0.51 | 0.27 | 0.27 | 0.73 |\n| erythroid progenitor cell | 864 | 0.60 | 0.57 | 0.82 | 0.80 | 0.00 | 0.69 | 0.76 | 0.74 | 0.79 |\n| innate lymphoid cell | 888 | 0.19 | 0.12 | 0.57 | 0.45 | 0.00 | 0.51 | 0.22 | 0.27 | 0.46 |\n| hematopoietic stem cell | 786 | 0.72 | 0.69 | 0.86 | 0.81 | 0.00 | 0.76 | 0.81 | 0.84 | 0.86 |\n| granulocyte | 699 | 0.22 | 0.00 | 0.74 | 0.67 | 0.00 | 0.17 | 0.29 | 0.30 | 0.56 |\n| CD8-positive, alpha-beta thymocyte | 665 | 0.40 | 0.01 | 0.57 | 0.42 | 0.00 | 0.47 | 0.30 | 0.41 | 0.74 |\n| activated CD4-positive, alpha-beta T cell | 512 | 0.06 | 0.00 | 0.47 | 0.15 | 0.00 | 0.15 | 0.14 | 0.15 | 0.33 |\n| myeloid dendritic cell | 524 | 0.15 | 0.08 | 0.57 | 0.37 | 0.00 | 0.25 | 0.18 | 0.22 | 0.32 |\n| platelet | 442 | 0.65 | 0.87 | 0.96 | 0.96 | 0.00 | 0.56 | 0.88 | 0.79 | 0.90 |\n| common myeloid progenitor | 417 | 0.00 | 0.41 | 0.84 | 0.76 | 0.00 | 0.73 | 0.78 | 0.86 | 0.90 |\n| thymocyte | 412 | 0.00 | 0.00 | 0.53 | 0.47 | 0.00 | 0.35 | 0.26 | 0.61 | 0.91 |\n| microglial cell | 358 | 0.11 | 0.01 | 0.61 | 0.18 | 0.00 | 0.46 | 0.20 | 0.20 | 0.37 |\n| colon macrophage | 286 | 0.22 | 0.00 | 0.82 | 0.40 | 0.00 | 0.42 | 0.25 | 0.43 | 0.86 |\n| leukocyte | 171 | 0.08 | 0.00 | 0.48 | 0.17 | 0.00 | 0.26 | 0.14 | 0.19 | 0.40 |\n| plasmacytoid dendritic cell | 91 | 0.00 | 0.37 | 0.80 | 0.64 | 0.00 | 0.15 | 0.52 | 0.50 | 0.69 |\n| hematopoietic cell | 90 | 0.00 | 0.00 | 0.98 | 0.82 | 0.00 | 0.04 | 0.98 | 0.62 | 0.96 |\n| myeloid cell | 79 | 0.00 | 0.00 | 0.40 | 0.12 | 0.00 | 0.46 | 0.42 | 0.32 | 0.91 |\n| Langerhans cell | 67 | 0.00 | 0.05 | 0.75 | 0.46 | 0.00 | 0.02 | 0.36 | 0.29 | 0.74 |\n| T follicular helper cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 0.92 | 0.60 | 0.91 |\n| erythroid lineage cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.67 | 1.00 | 0.00 |"
4
  }
celltypist.pkl CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:c2ff45440ba144f478d240c9198c5029204b19829e8864dadef31c3659fb416f
3
  size 890427
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0c9d1d7147c6cc2b170ca3faaa59a9eb493478bad1ab50f71b24eadd2040f7dd
3
  size 890427
harmony_knn_classifier.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:beee6ff95fe0debfd3db268976f01c894e8cba95c0c09bc2731dbbd3dabc8731
3
- size 414586260
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:084cce68a4a58438d271984165e6c077031fe242dbea1ff982c5d870cca9be2b
3
+ size 414799095
popv_output/predictions.csv CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:b8d5b1170f1a7d4c918be5f7146886fccbc9f8907a064e5110cd529a510dea4a
3
- size 15913441
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:44bc0cc80cd15e6cbe3924d789137cfc5be053b8bba4b729ec00d26574d2fd4d
3
+ size 15917875
preprocessing.json CHANGED
@@ -494,7 +494,6 @@
494
  "ENSG00000102265",
495
  "ENSG00000102287",
496
  "ENSG00000102383",
497
- "ENSG00000102385",
498
  "ENSG00000102387",
499
  "ENSG00000102393",
500
  "ENSG00000102468",
@@ -880,7 +879,6 @@
880
  "ENSG00000116754",
881
  "ENSG00000116791",
882
  "ENSG00000116819",
883
- "ENSG00000116824",
884
  "ENSG00000116833",
885
  "ENSG00000116863",
886
  "ENSG00000116906",
@@ -1057,6 +1055,7 @@
1057
  "ENSG00000124391",
1058
  "ENSG00000124459",
1059
  "ENSG00000124466",
 
1060
  "ENSG00000124491",
1061
  "ENSG00000124493",
1062
  "ENSG00000124507",
@@ -2473,6 +2472,7 @@
2473
  "ENSG00000170312",
2474
  "ENSG00000170323",
2475
  "ENSG00000170324",
 
2476
  "ENSG00000170345",
2477
  "ENSG00000170364",
2478
  "ENSG00000170385",
@@ -2944,7 +2944,6 @@
2944
  "ENSG00000184863",
2945
  "ENSG00000184916",
2946
  "ENSG00000184923",
2947
- "ENSG00000184925",
2948
  "ENSG00000184933",
2949
  "ENSG00000184937",
2950
  "ENSG00000184949",
@@ -3775,6 +3774,7 @@
3775
  "ENSG00000253967",
3776
  "ENSG00000254034",
3777
  "ENSG00000254101",
 
3778
  "ENSG00000254254",
3779
  "ENSG00000254416",
3780
  "ENSG00000254440",
 
494
  "ENSG00000102265",
495
  "ENSG00000102287",
496
  "ENSG00000102383",
 
497
  "ENSG00000102387",
498
  "ENSG00000102393",
499
  "ENSG00000102468",
 
879
  "ENSG00000116754",
880
  "ENSG00000116791",
881
  "ENSG00000116819",
 
882
  "ENSG00000116833",
883
  "ENSG00000116863",
884
  "ENSG00000116906",
 
1055
  "ENSG00000124391",
1056
  "ENSG00000124459",
1057
  "ENSG00000124466",
1058
+ "ENSG00000124479",
1059
  "ENSG00000124491",
1060
  "ENSG00000124493",
1061
  "ENSG00000124507",
 
2472
  "ENSG00000170312",
2473
  "ENSG00000170323",
2474
  "ENSG00000170324",
2475
+ "ENSG00000170340",
2476
  "ENSG00000170345",
2477
  "ENSG00000170364",
2478
  "ENSG00000170385",
 
2944
  "ENSG00000184863",
2945
  "ENSG00000184916",
2946
  "ENSG00000184923",
 
2947
  "ENSG00000184933",
2948
  "ENSG00000184937",
2949
  "ENSG00000184949",
 
3774
  "ENSG00000253967",
3775
  "ENSG00000254034",
3776
  "ENSG00000254101",
3777
+ "ENSG00000254221",
3778
  "ENSG00000254254",
3779
  "ENSG00000254416",
3780
  "ENSG00000254440",
pynndescent_index.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:b3a75578302aa7b293ed79a75727f24463bb2148e83cac6941e8bbfefce9d04a
3
- size 444398070
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:805007e560b38e707401c326334432349428de319304998e0d06ee5619b1efe2
3
+ size 444376018
scanvi/model.pt CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:043c7830ce26e20dc7db377173cff8d3e42e7ba2d046bff5f45a66d8c8480b7c
3
  size 18405100
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4d4062e95aa0d95fb150a2bdc82e9b1bbc29e4360f586ec0e2947013cd6feb08
3
  size 18405100
scvi/model.pt CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:f9b1a3ca08c3989207662e5556a807ba8d7edb4b4603574e88814b490ce22332
3
  size 17759613
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bd7c737441b85e1eafe3fedd17f0cdb12f58cc677108c4d4e9f87fb4557708b5
3
  size 17759613
scvi_knn_classifier.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:5633f24451d17e51bb8da168ee03a4ef54ebcbcaa9caf2e84b133889610e2241
3
- size 237013796
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c735ae2ccefc94c78a034845016b0986386db15f4673ce7e473cec6452e803d0
3
+ size 237328311
svm_classifier.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:a3f96dee8d80be13c86f48ffa6bc900ed3cb9358429881c6cd1dfc19bdcbbcf0
3
  size 7217314
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:97675e514219b96882c0e12c4471711434352a897368aeb78c2ec5d8acf1c95e
3
  size 7217314
svm_classifier_cuml.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:068f429d65d088e38261fe76ef932da269c9c3d123f6e34ec8c2f5be2cc53797
3
  size 768459
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:75353bb873c96a40fe31ec9f9f0224d78e97fd0646a339f1e095e7429218c63a
3
  size 768459
xgboost_classifier.model CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:4f66d5b559c354368ac330715b0d819989d4dab0159006c1091b3770b487a64c
3
- size 14272050
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:733e7ea996654c6fd0a5f2bb6a168bfba02bd2e9db2206b61e4cc122e46e0753
3
+ size 14299412