tabula_sapiens_Prostate / accuracies.json
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{
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 1055 | 0.94 | 0.96 | 0.97 | 0.94 | 0.00 | 0.92 | 0.95 | 0.94 | 0.96 |\n| basal cell of prostate epithelium | 348 | 0.85 | 0.88 | 0.90 | 0.83 | 0.00 | 0.82 | 0.87 | 0.86 | 0.89 |\n| CD8-positive, alpha-beta T cell | 255 | 0.91 | 0.88 | 0.95 | 0.87 | 0.00 | 0.92 | 0.92 | 0.93 | 0.95 |\n| endothelial cell | 127 | 0.98 | 0.98 | 0.99 | 0.96 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| macrophage | 94 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.99 | 0.99 | 0.96 | 0.98 |\n| fibroblast | 58 | 0.96 | 0.95 | 0.97 | 0.83 | 0.00 | 0.96 | 0.97 | 0.95 | 0.98 |\n| mature NK T cell | 50 | 0.91 | 0.18 | 0.92 | 0.12 | 0.00 | 0.90 | 0.91 | 0.92 | 0.93 |\n| smooth muscle cell | 46 | 0.94 | 0.94 | 0.93 | 0.80 | 0.00 | 0.86 | 0.93 | 0.88 | 0.94 |\n| neutrophil | 23 | 0.98 | 1.00 | 1.00 | 0.96 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| erythrocyte | 20 | 0.90 | 0.86 | 0.95 | 0.95 | 0.00 | 0.88 | 0.97 | 0.97 | 0.97 |\n| CD4-positive, alpha-beta T cell | 14 | 0.17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.49 | 0.50 | 0.34 | 0.19 |\n| B cell | 8 | 0.75 | 0.77 | 0.80 | 0.71 | 0.00 | 0.89 | 0.88 | 0.80 | 0.80 |\n| mast cell | 4 | 1.00 | 0.73 | 1.00 | 0.29 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 9597 | 0.95 | 0.96 | 0.98 | 0.96 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| basal cell of prostate epithelium | 3147 | 0.87 | 0.88 | 0.94 | 0.90 | 0.00 | 0.84 | 0.89 | 0.88 | 0.91 |\n| CD8-positive, alpha-beta T cell | 2261 | 0.93 | 0.89 | 0.96 | 0.91 | 0.00 | 0.94 | 0.94 | 0.95 | 0.96 |\n| endothelial cell | 1078 | 0.98 | 0.96 | 0.98 | 0.94 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| macrophage | 928 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| fibroblast | 461 | 0.96 | 0.95 | 0.98 | 0.86 | 0.00 | 0.95 | 0.98 | 0.97 | 0.99 |\n| mature NK T cell | 437 | 0.91 | 0.17 | 0.91 | 0.54 | 0.00 | 0.89 | 0.92 | 0.93 | 0.94 |\n| smooth muscle cell | 431 | 0.95 | 0.92 | 0.97 | 0.81 | 0.00 | 0.93 | 0.97 | 0.96 | 0.99 |\n| neutrophil | 238 | 0.99 | 0.98 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| erythrocyte | 119 | 0.93 | 0.85 | 0.97 | 0.92 | 0.00 | 0.90 | 0.99 | 0.98 | 0.98 |\n| CD4-positive, alpha-beta T cell | 102 | 0.31 | 0.00 | 0.19 | 0.13 | 0.00 | 0.65 | 0.64 | 0.65 | 0.47 |\n| B cell | 93 | 0.82 | 0.81 | 0.84 | 0.82 | 0.00 | 0.92 | 0.96 | 0.96 | 0.96 |\n| mast cell | 22 | 1.00 | 0.65 | 1.00 | 0.69 | 0.00 | 0.70 | 0.98 | 0.98 | 0.98 |\n| T cell | 13 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.51 | 0.93 | 0.70 | 0.92 |"
}