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tabula_sapiens_Prostate

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Prostate
Model card Files Community
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@@ -32,39 +32,39 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | luminal cell of prostate epithelium | 1059 | 0.95 | 0.96 | 0.97 | 0.94 | 0.00 | 0.91 | 0.95 | 0.94 | 0.96 |
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- | basal cell of prostate epithelium | 349 | 0.86 | 0.88 | 0.90 | 0.83 | 0.00 | 0.81 | 0.88 | 0.85 | 0.90 |
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- | CD8-positive, alpha-beta T cell | 259 | 0.94 | 0.89 | 0.95 | 0.87 | 0.00 | 0.94 | 0.92 | 0.94 | 0.95 |
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- | endothelial cell | 123 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.97 | 0.98 | 0.98 |
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- | macrophage | 89 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.98 | 0.95 | 0.98 |
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- | fibroblast | 58 | 0.96 | 0.94 | 0.97 | 0.90 | 0.00 | 0.98 | 0.95 | 0.94 | 0.97 |
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- | mature NK T cell | 50 | 0.91 | 0.18 | 0.91 | 0.24 | 0.00 | 0.94 | 0.91 | 0.92 | 0.92 |
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- | smooth muscle cell | 48 | 0.96 | 0.95 | 0.92 | 0.82 | 0.00 | 0.79 | 0.95 | 0.90 | 0.93 |
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- | neutrophil | 22 | 0.98 | 1.00 | 1.00 | 0.91 | 0.00 | 0.98 | 0.96 | 0.96 | 0.96 |
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- | erythrocyte | 20 | 0.90 | 0.88 | 0.93 | 0.77 | 0.00 | 0.97 | 0.97 | 0.93 | 0.97 |
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- | CD4-positive, alpha-beta T cell | 13 | 0.26 | 0.00 | 0.12 | 0.00 | 0.00 | 0.40 | 0.50 | 0.57 | 0.21 |
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- | B cell | 8 | 0.80 | 0.80 | 0.80 | 0.75 | 0.00 | 0.89 | 0.88 | 0.86 | 0.80 |
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- | mast cell | 4 | 1.00 | 0.75 | 1.00 | 0.33 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |
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- | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | luminal cell of prostate epithelium | 9593 | 0.95 | 0.96 | 0.98 | 0.96 | 0.00 | 0.93 | 0.95 | 0.95 | 0.97 |
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- | basal cell of prostate epithelium | 3146 | 0.86 | 0.88 | 0.94 | 0.90 | 0.00 | 0.84 | 0.89 | 0.88 | 0.91 |
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- | CD8-positive, alpha-beta T cell | 2257 | 0.94 | 0.88 | 0.96 | 0.91 | 0.00 | 0.96 | 0.95 | 0.95 | 0.96 |
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- | endothelial cell | 1082 | 0.98 | 0.94 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
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- | macrophage | 933 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
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- | fibroblast | 461 | 0.96 | 0.95 | 0.98 | 0.87 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |
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- | mature NK T cell | 437 | 0.91 | 0.16 | 0.92 | 0.53 | 0.00 | 0.94 | 0.92 | 0.93 | 0.95 |
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- | smooth muscle cell | 429 | 0.96 | 0.90 | 0.97 | 0.84 | 0.00 | 0.89 | 0.97 | 0.97 | 0.98 |
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- | neutrophil | 239 | 0.99 | 0.98 | 0.99 | 0.97 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | erythrocyte | 119 | 0.93 | 0.87 | 0.97 | 0.88 | 0.00 | 0.93 | 1.00 | 1.00 | 0.99 |
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- | CD4-positive, alpha-beta T cell | 103 | 0.28 | 0.00 | 0.25 | 0.07 | 0.00 | 0.68 | 0.66 | 0.69 | 0.45 |
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- | B cell | 93 | 0.83 | 0.82 | 0.83 | 0.82 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |
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- | mast cell | 22 | 0.98 | 0.67 | 0.98 | 0.46 | 0.00 | 0.81 | 1.00 | 0.98 | 0.98 |
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- | T cell | 13 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.80 | 1.00 | 0.74 | 0.88 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | luminal cell of prostate epithelium | 1052 | 0.94 | 0.97 | 0.97 | 0.94 | 0.00 | 0.94 | 0.95 | 0.93 | 0.96 |
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+ | basal cell of prostate epithelium | 352 | 0.85 | 0.89 | 0.90 | 0.84 | 0.00 | 0.87 | 0.87 | 0.84 | 0.90 |
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+ | CD8-positive, alpha-beta T cell | 256 | 0.94 | 0.88 | 0.95 | 0.88 | 0.00 | 0.93 | 0.92 | 0.93 | 0.96 |
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+ | endothelial cell | 121 | 0.98 | 0.97 | 0.97 | 0.94 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
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+ | macrophage | 94 | 0.96 | 0.98 | 0.98 | 0.96 | 0.00 | 0.99 | 0.97 | 0.97 | 0.98 |
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+ | fibroblast | 59 | 0.96 | 0.95 | 0.97 | 0.84 | 0.00 | 0.94 | 0.95 | 0.94 | 0.97 |
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+ | mature NK T cell | 51 | 0.93 | 0.15 | 0.91 | 0.32 | 0.00 | 0.93 | 0.94 | 0.91 | 0.96 |
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+ | smooth muscle cell | 48 | 0.92 | 0.95 | 0.91 | 0.80 | 0.00 | 0.92 | 0.92 | 0.91 | 0.96 |
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+ | neutrophil | 23 | 0.98 | 0.98 | 0.98 | 0.89 | 0.00 | 0.96 | 0.96 | 1.00 | 0.98 |
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+ | erythrocyte | 21 | 0.85 | 0.91 | 0.95 | 0.95 | 0.00 | 0.83 | 0.98 | 0.93 | 0.98 |
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+ | CD4-positive, alpha-beta T cell | 13 | 0.11 | 0.00 | 0.25 | 0.00 | 0.00 | 0.44 | 0.39 | 0.53 | 0.24 |
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+ | B cell | 8 | 0.75 | 0.86 | 0.80 | 0.75 | 0.00 | 0.89 | 0.93 | 0.86 | 0.80 |
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+ | mast cell | 4 | 1.00 | 0.75 | 1.00 | 0.67 | 0.00 | 0.35 | 0.89 | 1.00 | 1.00 |
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+ | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | luminal cell of prostate epithelium | 9600 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.94 | 0.95 | 0.94 | 0.96 |
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+ | basal cell of prostate epithelium | 3143 | 0.85 | 0.87 | 0.94 | 0.91 | 0.00 | 0.87 | 0.89 | 0.86 | 0.90 |
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+ | CD8-positive, alpha-beta T cell | 2260 | 0.95 | 0.88 | 0.96 | 0.91 | 0.00 | 0.92 | 0.95 | 0.95 | 0.97 |
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+ | endothelial cell | 1084 | 0.98 | 0.92 | 0.98 | 0.96 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |
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+ | macrophage | 928 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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+ | fibroblast | 460 | 0.96 | 0.95 | 0.98 | 0.86 | 0.00 | 0.96 | 0.98 | 0.98 | 0.99 |
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+ | mature NK T cell | 436 | 0.91 | 0.18 | 0.92 | 0.54 | 0.00 | 0.92 | 0.92 | 0.93 | 0.95 |
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+ | smooth muscle cell | 429 | 0.93 | 0.91 | 0.97 | 0.83 | 0.00 | 0.94 | 0.97 | 0.97 | 0.99 |
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+ | neutrophil | 238 | 0.99 | 0.98 | 0.99 | 0.95 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
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+ | erythrocyte | 118 | 0.87 | 0.86 | 0.97 | 0.93 | 0.00 | 0.83 | 0.99 | 0.99 | 0.98 |
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+ | CD4-positive, alpha-beta T cell | 103 | 0.26 | 0.00 | 0.23 | 0.09 | 0.00 | 0.47 | 0.67 | 0.69 | 0.43 |
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+ | B cell | 93 | 0.82 | 0.82 | 0.84 | 0.90 | 0.00 | 0.92 | 0.99 | 0.98 | 0.97 |
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+ | mast cell | 22 | 1.00 | 0.64 | 0.98 | 0.68 | 0.00 | 0.38 | 0.98 | 0.98 | 1.00 |
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+ | T cell | 13 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.75 | 0.96 | 0.67 | 0.83 |
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  </details>
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