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hexviz

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Commit History

Changet test structure in get_structure

d1b48a1

aksell commited on Mar 30, 2023

Clean up view

bf964bb

aksell commited on Mar 30, 2023

Show EC class if using ZymCTRL and EC class is available in PDB

79ff34a

aksell commited on Mar 30, 2023

Add PROT BERT

1c423ed

aksell commited on Mar 30, 2023

Update requirements.txt from poetry

02840f4

aksell commited on Mar 30, 2023

Link to RCSB structure

f60f302

aksell commited on Mar 28, 2023

Hide min attention slider in expander

c621eec

aksell commited on Mar 28, 2023

Split attention.py into attention.py and models.py

eb9ae1f

aksell commited on Mar 28, 2023

Cache TAPE-BERT loading

e07549d

aksell commited on Mar 28, 2023

Disable ProtGPT2

4a42326

aksell commited on Mar 28, 2023

Add ProtGPT2 model

2338bb4

aksell commited on Mar 28, 2023

Remove unused debuging code path

1431daf

aksell commited on Mar 28, 2023

Update text and title

db81f50

aksell commited on Mar 27, 2023

Cache get_attention and get_structure

ff8eaa8

aksell commited on Mar 27, 2023

Add ZymCTRL model

cfba77f

aksell commited on Mar 27, 2023

WIP: Start adding ProtT5

5b6d16d

aksell commited on Mar 27, 2023

Remove sidebar title

4ad80db

aksell commited on Mar 23, 2023

Remove redundant app.py

6fea74c

aksell commited on Mar 23, 2023

Downgrade streamlit - 1.17

0f66182

aksell commited on Mar 23, 2023

Restore old README.md

61d307b

aksell commited on Mar 23, 2023

Use python 3.8.9

9938060

aksell commited on Mar 23, 2023

Simplify README.md metadata

b7bfd49

aksell commited on Mar 23, 2023

Move app.py to top level

59008d0

aksell commited on Mar 23, 2023

Export requirements.txt from poetry

53ba5a6

aksell commited on Mar 23, 2023

Add default huggingface .gitatributes file

c42816d

aksell commited on Mar 23, 2023

Add metadata to run in huggingface spaces

e2061b9

aksell commited on Mar 23, 2023

Rename project protention -> hexviz

28d4b1e

aksell commited on Mar 23, 2023

Fix zero indexing of head and layer selector

9a7dfe2

aksell commited on Mar 23, 2023

Visualize attention pairs on structure

58c7b8d

aksell commited on Mar 23, 2023

Add ModelType enum and Model class to hold layers and head count

ebbe380

aksell commited on Mar 22, 2023

Implement get_attention for tape BERT

466a8f2

aksell commited on Mar 22, 2023

Add get_sequence

b7ab123

aksell commited on Mar 20, 2023

Add get_protT5

87c0dbc

aksell commited on Mar 20, 2023

Add .gitignore

f12036e

aksell commited on Mar 20, 2023

Add get_structure

f8402f9

aksell commited on Mar 20, 2023

Add basic streamlit view using stmol

08dc5f2

aksell commited on Mar 15, 2023

Initialize Poetry project

b92b272

aksell commited on Mar 15, 2023