{ "dataset_name": "Dataset050_ukbb_inhouse_nako", "plans_name": "nnUNetPlans", "original_median_spacing_after_transp": [ 3.0, 1.5, 1.5 ], "original_median_shape_after_transp": [ 96, 213, 227 ], "image_reader_writer": "SimpleITKIO", "transpose_forward": [ 0, 1, 2 ], "transpose_backward": [ 0, 1, 2 ], "configurations": { "2d": { "data_identifier": "nnUNetPlans_2d", "preprocessor_name": "DefaultPreprocessor", "batch_size": 35, "patch_size": [ 256, 320 ], "median_image_size_in_voxels": [ 242.0, 297.0 ], "spacing": [ 1.5, 1.5 ], "normalization_schemes": [ "ZScoreNormalization" ], "use_mask_for_norm": [ false ], "UNet_class_name": "PlainConvUNet", "UNet_base_num_features": 32, "n_conv_per_stage_encoder": [ 2, 2, 2, 2, 2, 2, 2 ], "n_conv_per_stage_decoder": [ 2, 2, 2, 2, 2, 2 ], "num_pool_per_axis": [ 6, 6 ], "pool_op_kernel_sizes": [ [ 1, 1 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ], [ 2, 2 ] ], "conv_kernel_sizes": [ [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ], [ 3, 3 ] ], "unet_max_num_features": 512, "resampling_fn_data": "resample_data_or_seg_to_shape", "resampling_fn_seg": "resample_data_or_seg_to_shape", "resampling_fn_data_kwargs": { "is_seg": false, "order": 3, "order_z": 0, "force_separate_z": null }, "resampling_fn_seg_kwargs": { "is_seg": true, "order": 1, "order_z": 0, "force_separate_z": null }, "resampling_fn_probabilities": "resample_data_or_seg_to_shape", "resampling_fn_probabilities_kwargs": { "is_seg": false, "order": 1, "order_z": 0, "force_separate_z": null }, "batch_dice": true }, "3d_lowres": { "data_identifier": "nnUNetPlans_3d_lowres", "preprocessor_name": "DefaultPreprocessor", "batch_size": 2, "patch_size": [ 96, 128, 160 ], "median_image_size_in_voxels": [ 147, 203, 249 ], "spacing": [ 1.7910784447935002, 1.7910784447935002, 1.7910784447935002 ], "normalization_schemes": [ "ZScoreNormalization" ], "use_mask_for_norm": [ false ], "UNet_class_name": "PlainConvUNet", "UNet_base_num_features": 32, "n_conv_per_stage_encoder": [ 2, 2, 2, 2, 2, 2 ], "n_conv_per_stage_decoder": [ 2, 2, 2, 2, 2 ], "num_pool_per_axis": [ 4, 5, 5 ], "pool_op_kernel_sizes": [ [ 1, 1, 1 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 1, 2, 2 ] ], "conv_kernel_sizes": [ [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ] ], "unet_max_num_features": 320, "resampling_fn_data": "resample_data_or_seg_to_shape", "resampling_fn_seg": "resample_data_or_seg_to_shape", "resampling_fn_data_kwargs": { "is_seg": false, "order": 3, "order_z": 0, "force_separate_z": null }, "resampling_fn_seg_kwargs": { "is_seg": true, "order": 1, "order_z": 0, "force_separate_z": null }, "resampling_fn_probabilities": "resample_data_or_seg_to_shape", "resampling_fn_probabilities_kwargs": { "is_seg": false, "order": 1, "order_z": 0, "force_separate_z": null }, "batch_dice": false, "next_stage": "3d_cascade_fullres" }, "3d_fullres": { "data_identifier": "nnUNetPlans_3d_fullres", "preprocessor_name": "DefaultPreprocessor", "batch_size": 2, "patch_size": [ 96, 128, 160 ], "median_image_size_in_voxels": [ 176.0, 242.0, 297.0 ], "spacing": [ 1.5, 1.5, 1.5 ], "normalization_schemes": [ "ZScoreNormalization" ], "use_mask_for_norm": [ false ], "UNet_class_name": "PlainConvUNet", "UNet_base_num_features": 32, "n_conv_per_stage_encoder": [ 2, 2, 2, 2, 2, 2 ], "n_conv_per_stage_decoder": [ 2, 2, 2, 2, 2 ], "num_pool_per_axis": [ 4, 5, 5 ], "pool_op_kernel_sizes": [ [ 1, 1, 1 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 2, 2, 2 ], [ 1, 2, 2 ] ], "conv_kernel_sizes": [ [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ], [ 3, 3, 3 ] ], "unet_max_num_features": 320, "resampling_fn_data": "resample_data_or_seg_to_shape", "resampling_fn_seg": "resample_data_or_seg_to_shape", "resampling_fn_data_kwargs": { "is_seg": false, "order": 3, "order_z": 0, "force_separate_z": null }, "resampling_fn_seg_kwargs": { "is_seg": true, "order": 1, "order_z": 0, "force_separate_z": null }, "resampling_fn_probabilities": "resample_data_or_seg_to_shape", "resampling_fn_probabilities_kwargs": { "is_seg": false, "order": 1, "order_z": 0, "force_separate_z": null }, "batch_dice": true }, "3d_cascade_fullres": { "inherits_from": "3d_fullres", "previous_stage": "3d_lowres" }, "3d_fullres_bs4": { "inherits_from": "3d_fullres", "batch_size": 4 }, "3d_fullres_bs8": { "inherits_from": "3d_fullres", "batch_size": 8 } }, "experiment_planner_used": "ExperimentPlanner", "label_manager": "LabelManager", "foreground_intensity_properties_per_channel": { "0": { "max": 14416.6142578125, "mean": 71.91462871283315, "median": 82.0, "min": -2611.0, "percentile_00_5": -962.0, "percentile_99_5": 1058.0, "std": 363.40285188479527 } } }