feat: behaviour checkboxes for wounded section

app/assets/config/config_checkbox_behavior.json

@@ -0,0 +1,42 @@
+{
+    "Abnormal breating":
+    {
+        "Description": "Problems breathing, breathing sounds"
+    },
+    "Crash, Falling from the sky":
+    {
+        "Description": "Suddenly falling from the sky"
+    },
+    "Diarrhea":
+    {
+        "Description": "Observed diarrhea"
+    },
+    "Lameness":
+    {
+        "Description": "Apparent limping or not able to walk properly"
+    },
+    "Neurological":
+    {
+        "Description": "Circling, incoordination, tremors, convulsions, fast eye movements"
+    },
+    "Other abnormal behavior":
+    {
+        "Description": "Other than weakness, other than neurologic"
+    },
+    "Unable to fly":
+    {
+        "Description": "Animal alert and tries to fly but can not take off"
+    },
+    "Vomiting":
+    {
+        "Description": "Throwing up undigested food, regurgitating"
+    },
+    "Weakness":
+    {
+        "Description": "Non responsive, does not fly away when approached, lethargy"
+    },
+    "No changes": 
+    {
+        "Description": "Animal is acting normally"
+    }
+}

app/behavior_checkbox.py

@@ -0,0 +1,23 @@
+from utils_config import get_custom_config_dropdowns
+from utils_checkbox import create_checkbox
+from utils_visible import set_visible
+
+def retrieve_behavior_options_description():
+    dropdown_config = get_custom_config_dropdowns("/assets/config/config_checkbox_behavior.json")
+    options = list(dropdown_config.keys())
+    options = [option.title() for option in options]
+    descriptions =[]
+    for _,subdict in dropdown_config.items():
+        descriptions.append(subdict["Description"])
+    return options, descriptions
+
+def create_behavior_checkbox(section: str, visible):
+    options, descriptions = retrieve_behavior_options_description()
+    label_checkbox = "Behavior changes observed"
+    checkbox, text = create_checkbox("", section, label_checkbox, visible, options, descriptions)
+    return checkbox, text
+
+def show_behavior(choice, section: str): 
+    visible = set_visible(choice)
+    checkbox, text = create_behavior_checkbox(section, visible)
+    return checkbox, text

app/main.py

@@ -5,6 +5,7 @@ from wounded import show_section_wounded
 from circumstances import show_causes
 from circumstances_dropdowns import *
 from physical_select_animal import show_physical, find_bounding_box
+from behavior_checkbox import show_behavior
 from maps import get_location
 from style import *
 from theme import theme, css
@@ -56,11 +57,12 @@ with gr.Blocks(theme=theme, css=css) as demo:
         button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead, \
             dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead \
                 = show_section_dead(False)
-    section_wounded, radio_cause_wounded, radio_behaviour_wounded, radio_physical_wounded, \
+    section_wounded, radio_cause_wounded, radio_behavior_wounded, radio_physical_wounded, \
         button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded, \
             dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded, \
-                physical_boxes_wounded, \
-                    checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs \
+                behavior_checkbox, behavior_text, \
+                    physical_boxes_wounded, \
+                        checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs \
                         = show_section_wounded(False)
 
     # ---------------------------------------------------------
@@ -76,9 +78,10 @@ with gr.Blocks(theme=theme, css=css) as demo:
     butt_dead.click(partial_hide_section_wounded, 
                     inputs=None, 
                     outputs=[section_wounded, 
-                            radio_cause_wounded, radio_behaviour_wounded, radio_physical_wounded,
+                            radio_cause_wounded, radio_behavior_wounded, radio_physical_wounded,
                             button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded, 
                             dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded,
+                            behavior_checkbox, behavior_text, 
                             physical_boxes_wounded, 
                             checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
 
@@ -91,9 +94,10 @@ with gr.Blocks(theme=theme, css=css) as demo:
     butt_wounded.click(partial_show_section_wounded, 
                        inputs=None, 
                        outputs=[section_wounded, 
-                                radio_cause_wounded, radio_behaviour_wounded, radio_physical_wounded,
+                                radio_cause_wounded, radio_behavior_wounded, radio_physical_wounded,
                                 button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded, 
                                 dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded,
+                                behavior_checkbox, behavior_text, 
                                 physical_boxes_wounded, 
                                 checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
                                 ])
@@ -128,12 +132,18 @@ with gr.Blocks(theme=theme, css=css) as demo:
     
     dropdown_wounded.select(on_select, None, [dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
 
+    # ---------------------------------------------------------
+    # Radio Behavior Wounded
+    radio_behavior_wounded.change(fn=show_behavior,
+                                  inputs=[radio_behavior_wounded, gr.Text("wounded", visible=False)],
+                                  outputs=[behavior_checkbox, behavior_text])
+
     # ---------------------------------------------------------
     # Radio Physical Wounded
     radio_physical_wounded.change(fn=show_physical,
                                   inputs=[radio_physical_wounded, gr.Text("wounded", visible=False)],
                                   outputs=[physical_boxes_wounded])
-    # ---------------------------------------------------------
+
     # Checkbox Physical Wounded
     physical_boxes_wounded.select(find_bounding_box, 
                      inputs=[physical_boxes_wounded, gr.Textbox(value="wounded", visible=False)], 

app/physical_checkbox.py

@@ -1,19 +1,23 @@
 import gradio as gr
 from utils_config import get_custom_config_dropdowns
-from circumstances_dropdowns import retrieve_config_options
-
+from utils_checkbox import create_checkbox
 #--------------------------------------------------------- 
 def get_body_parts():
     dropdown_config = get_custom_config_dropdowns("/assets/config/config_checkbox_physical.json")
     return list(dropdown_config.keys())
 
-#--------------------------------------------------------- 
+def retrieve_config_options(label, dropdown_config):
+    options = list(dropdown_config[label].keys())
+    options = [option.title() for option in options]
+    return options
+
 def get_options_description(value):
         dropdown_config = get_custom_config_dropdowns("/assets/config/config_checkbox_physical.json")
         # get options
-        options = retrieve_config_options("Common", dropdown_config)
+        options_common = retrieve_config_options("Common", dropdown_config)
         options_for_value = retrieve_config_options(value, dropdown_config)
-        options.extend(options_for_value)
+        options_common.extend(options_for_value)
+        options = options_common
         # get descriptions
         descriptions = []
         for key, sub_dict in dropdown_config.items():
@@ -24,55 +28,44 @@ def get_options_description(value):
                             descriptions.append(description)
         return options, descriptions
 
-#---------------------------------------------------------
-def create_checkbox(body_part, section, visible):
-    options, descriptions = get_options_description(body_part)
-    descriptions_info = "".join([f"\t{option}: {description}\n" for option, description in zip(options, descriptions)])
-    checkbox = gr.CheckboxGroup(options, 
-                        label=f"Physical changes observed on {body_part}:",
-                        visible=visible,
-                        interactive=True,
-                        elem_id=section)
-    text = gr.Textbox(descriptions_info, 
-                    label = "Info", 
-                    visible=visible,
-                    interactive=False,
-                    lines=13, 
-                    max_lines=15, 
-                    elem_id=section)
-    return checkbox, text
-
-def create_checkbox_beak(section, visible):
+#--------------------------------------------------------- 
+def create_checkbox_beak(section, label_checkbox, visible):
     body_part="Beak"
-    return create_checkbox(body_part, section, visible)
+    options, descriptions = get_options_description(body_part)
+    return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
 
-def create_checkbox_body(section, visible):
+def create_checkbox_body(section, label_checkbox, visible):
     body_part="Body"
-    return create_checkbox(body_part, section, visible)
+    options, descriptions = get_options_description(body_part)
+    return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
 
-def create_checkbox_feathers(section, visible):
+def create_checkbox_feathers(section, label_checkbox, visible):
     body_part="Feathers/Wings/Tail"
-    return create_checkbox(body_part, section, visible)
+    options, descriptions = get_options_description(body_part)
+    return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
 
-def create_checkbox_head(section, visible):
+def create_checkbox_head(section, label_checkbox, visible):
     body_part="Head incl. eyes"
-    return create_checkbox(body_part, section, visible)
+    options, descriptions = get_options_description(body_part)
+    return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
 
-def create_checkbox_legs(section, visible):
+def create_checkbox_legs(section, label_checkbox, visible):
     body_part="Legs"
-    return create_checkbox(body_part, section, visible)
+    options, descriptions = get_options_description(body_part)
+    return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
 
 #---------------------------------------------------------
 def process_body_parts(section, matched_box):
     #take all except "Common"
     body_parts = get_body_parts()
     body_parts = body_parts[1:]
+    label_checkbox = "Physical changes to "
     visibles = [True if matched_box==body_part else False for body_part in body_parts ]
-    checkbox_beak, text_beak = create_checkbox_beak(section, visibles[0])
-    checkbox_body, text_body = create_checkbox_body(section, visibles[1])
-    checkbox_feathers, text_feathers = create_checkbox_feathers(section, visibles[2])
-    checkbox_head, text_head = create_checkbox_head(section, visibles[3])
-    checkbox_legs, text_legs = create_checkbox_legs(section, visibles[4])
+    checkbox_beak, text_beak = create_checkbox_beak(section, label_checkbox, visibles[0])
+    checkbox_body, text_body = create_checkbox_body(section, label_checkbox, visibles[1])
+    checkbox_feathers, text_feathers = create_checkbox_feathers(section, label_checkbox, visibles[2])
+    checkbox_head, text_head = create_checkbox_head(section, label_checkbox, visibles[3])
+    checkbox_legs, text_legs = create_checkbox_legs(section, label_checkbox, visibles[4])
     return checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
           
      

app/utils_checkbox.py

@@ -0,0 +1,18 @@
+import gradio as gr
+
+#---------------------------------------------------------
+def create_checkbox(value, section, label_checkbox, visible, options, descriptions):
+    descriptions_info = "".join([f"\t{option}: {description}\n" for option, description in zip(options, descriptions)])
+    checkbox = gr.CheckboxGroup(options, 
+                        label=label_checkbox + f" {value}:",
+                        visible=visible,
+                        interactive=True,
+                        elem_id=section)
+    text = gr.Textbox(descriptions_info, 
+                    label = "Info", 
+                    visible=visible,
+                    interactive=False,
+                    lines=13, 
+                    max_lines=15, 
+                    elem_id=section)
+    return checkbox, text

app/utils_config.py

@@ -12,3 +12,4 @@ def get_custom_config_dropdowns(config_path):
     dropdown_config = load_config(dropdown_config_path)
     return dropdown_config
 
+

app/wounded.py

@@ -2,6 +2,7 @@ import gradio as gr
 from circumstances import create_causes
 from physical_select_animal import create_bird_anatomy
 from physical_checkbox import process_body_parts
+from behavior_checkbox import create_behavior_checkbox
 from followup_events import create_followup_section
 
 def show_section_wounded(visible):
@@ -14,6 +15,8 @@ def show_section_wounded(visible):
 
         gr.Markdown("## Is the bird displaying behavioural changes?" , label="description")
         radio_behaviour = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+        with gr.Row():
+            behavior_checkbox, behavior_text = create_behavior_checkbox("wounded", False)
 
         gr.Markdown("## Are there physical changes on the bird?" , label="description")
         radio_physical = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
@@ -30,5 +33,6 @@ def show_section_wounded(visible):
     return wounded_section, radio_cause, radio_behaviour, radio_physical, \
         button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, \
         dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2, \
+        behavior_checkbox, behavior_text, \
         physical_boxes, \
         checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs