Improve graph viz

app.py

@@ -15,10 +15,11 @@ intro.subheader("Create easier access to health✨")
 
 jellyfish.image("data/img/Jellymation.gif")
 intro.markdown(
-    "Healthsea is a spaCy v3 pipeline that analyzes user-generated reviews to supplementary products by extracting the effects on health stated by the reviewer."
+    """Healthsea is a spaCy v3 pipeline that is capable of analyzing user-generated reviews to supplementary products by extracting their effects on health.
+    The analysis is based on the written-text and context from the reviews."""
 )
 intro.markdown(
-    """With this app, you're able to explore the pipeline and it's result on productive data. You can choose between two different apps `Visualize dataset` and `Visualize pipeline`
+    """With this app, you're able to explore the pipeline and its analysis on productive data. You can choose between two different apps `Visualize dataset` and `Visualize pipeline`.
     """
 )
 intro.markdown(

support_functions.py

@@ -117,69 +117,33 @@ class HealthseaSearch:
             _aspect = difflib.get_close_matches("_aspect", self.conditions.keys())[0]
             return self.conditions[_aspect]
 
-    # Plotting vectors (2D/3D)
-    def tsne_plot(self, dataset):
-        "Creates and TSNE model and plots it"
-        labels = []
-        tokens = []
-
-        for i in dataset:
-            tokens.append(np.array(i[1]))
-            labels.append(i[0])
-
-        if len(dataset) > 2:
-            tsne_model = TSNE(
-                perplexity=40, n_components=3, init="pca", n_iter=2500, random_state=23
-            )
-
-            new_values = tsne_model.fit_transform(tokens)
-
-            x = []
-            y = []
-            z = []
-            for value in new_values:
-                x.append(value[0])
-                y.append(value[1])
-                z.append(value[2])
-
-            trace = go.Scatter3d(
-                x=x,
-                y=y,
-                z=z,
-                text=labels,
-                textposition="top right",
-                mode="lines+markers+text",
-                marker={
-                    "size": 10,
-                    "opacity": 1,
-                    "colorscale":'Viridis',
-                },
-            )
-
-            # Configure the layout.
-            layout = go.Layout(
-                margin={"l": 0, "r": 0, "b": 0, "t": 0}, font={"color": "#DF55E2", "size":20}
-            )
-
-            data = [trace]
-
-            return go.Figure(data=data, layout=layout)
-
     def pyvis(self, vectors):
         net = Network(height='500px', width='700px', bgcolor="#0E1117", font_color="#ffffff")
-        net.barnes_hut(central_gravity = 0.8, spring_length = 100)
+        net.barnes_hut(gravity=-2500)
+        net.set_edge_smooth("dynamic")
+        net.toggle_stabilization(False)
 
-        net.add_node(vectors[0][0], label=vectors[0][0], color="#4EA0DB", value=100) # node id = 1 and label = Node 1
+        net.add_node(vectors[0][0], label=vectors[0][0], color="#4EA0DB", value=100, shape="circle") # node id = 1 and label = Node 1
 
         for vector in vectors[1:]:
-            net.add_node(vector[0], label=vector[0], color="#FE51B9", value=70) # node id = 1 and label = Node 1
+            net.add_node(vector[0], label=vector[0], color="#FE51B9", value=70, shape="circle") # node id = 1 and label = Node 1
 
         for i, vector in enumerate(vectors):
             current_vector = vectors[i]
             if i < len(vectors):
-                for _vector in vectors[i+1:]:
-                    sim = self.calculate_cosine_sim(current_vector[1],_vector[1])
-                    net.add_edge(current_vector[0],_vector[0], weight=sim, value=sim*0.1, title=sim)
+                if i == 0:
+                    for _vector in vectors[i+1:]:
+                        sim = self.calculate_cosine_sim(current_vector[1],_vector[1])
+                        net.add_edge(current_vector[0],_vector[0], weight=sim, value=sim, title=sim)
+                else:
+                    for _vector in vectors[i+1:]:
+                        sim = self.calculate_cosine_sim(current_vector[1],_vector[1])
+                        net.add_edge(current_vector[0],_vector[0], weight=sim, value=sim/2, title=sim)
+
+        #for _vector in vectors[1:]:
+        #    sim = self.calculate_cosine_sim(vectors[0][1],_vector[1])
+        #    net.add_edge(vectors[0][0],_vector[0], weight=sim, value=sim*0.1, title=sim)
+
 
         net.save_graph("viz.html")
         HtmlFile = open("viz.html", 'r', encoding='utf-8')

visualize_dataset.py

@@ -52,9 +52,11 @@ def visualize_dataset():
 
     # KPI
 
-    st.info("""This app presents the analyzed dataset of up to one million reviews. You can search for the products and substances with the highest score based on health aspect. The score is based on what reviewers wrote in their reviews.""")
-    st.warning("""Please note that the results produced by Healthsea should not be used as a foundation for solving health problems neither do we want to advocate that supplement products are able to solve everyone's health issues.
-    Healthsea is a research project that presents a technical approach on analyzing user-generated reviews and acts as a proof-of-concept.""")
+    st.info("""This app showcases a dataset of up to one million reviews that was analyzed by the Healthsea pipeline. You can search for any health aspect, whether it's a disease (e.g. joint pain) or a positive state of health (e.g. energy), the app will output a list of products and substances.
+    These products have a score which is calculated by the content of their reviews.""")
+
+    st.warning("""Please note that Healthsea is a research project and a proof-of-concept that presents a technical approach on analyzing user-generated reviews.
+    The results produced by Healthsea should not be used as a foundation for treating health problems and neither do we want to advocate that supplementary products are able to solve all health issues.""")
 
 
     st.markdown("""---""")
@@ -63,10 +65,13 @@ def visualize_dataset():
 
     kpi_products, kpi_reviews, kpi_condition, kpi_benefit = st.columns(4)
 
-    kpi_products.markdown(kpi(len(products), "Products"), unsafe_allow_html=True)
-    kpi_reviews.markdown(kpi(933.240, "Reviews"), unsafe_allow_html=True)
-    kpi_condition.markdown(kpi(len(conditions), "Conditions"), unsafe_allow_html=True)
-    kpi_benefit.markdown(kpi(len(benefits), "Benefits"), unsafe_allow_html=True)
+    def round_to_k(value):
+        return str(round(value/1000,1))+"k"
+
+    kpi_products.markdown(kpi(round_to_k(len(products)), "Products"), unsafe_allow_html=True)
+    kpi_reviews.markdown(kpi(round_to_k(int(933240)), "Reviews"), unsafe_allow_html=True)
+    kpi_condition.markdown(kpi(round_to_k(len(conditions)), "Conditions"), unsafe_allow_html=True)
+    kpi_benefit.markdown(kpi(round_to_k(len(benefits)), "Benefits"), unsafe_allow_html=True)
 
     st.markdown("""---""")
 
@@ -96,16 +101,11 @@ def visualize_dataset():
     # KPI & Alias
     aspect_alias = search_engine.get_aspect(search)["alias"]
 
+    kpi_product_mentions, kpi_alias = st.columns(2)
+
+    kpi_product_mentions.markdown(kpi(len(search_engine.get_aspect(search)["products"]), "Products"), unsafe_allow_html=True)
+
     if len(aspect_alias) > 0:
-        kpi_mentions, kpi_product_mentions, kpi_alias = st.columns(3)
-        kpi_mentions.markdown(
-            kpi(search_engine.get_aspect_meta(search)["frequency"], "Mentions"),
-            unsafe_allow_html=True,
-        )
-        kpi_product_mentions.markdown(
-            kpi(len(search_engine.get_aspect(search)["products"]), "Products"),
-            unsafe_allow_html=True,
-        )
         kpi_alias.markdown(
             kpi(len(aspect_alias), "Similar health aspects"),
             unsafe_allow_html=True,
@@ -122,17 +122,6 @@ def visualize_dataset():
         #st.write(search_engine.tsne_plot(vectors))
         search_engine.pyvis(vectors)
 
-    else:
-        kpi_mentions, kpi_product_mentions = st.columns(2)
-        kpi_mentions.markdown(
-            kpi(search_engine.get_aspect_meta(search)["frequency"], "Mentions"),
-            unsafe_allow_html=True,
-        )
-        kpi_product_mentions.markdown(
-            kpi(len(search_engine.get_aspect(search)["products"]), "Products"),
-            unsafe_allow_html=True,
-        )
-
     st.markdown("""---""")
 
     # Substances
@@ -141,7 +130,7 @@ def visualize_dataset():
 
     # DataFrame
     st.write(search_engine.get_substances_df(search, n))
-    kpi_tmp, kpi_substances = st.columns(2)
+    kpi_substances, empty = st.columns(2)
     kpi_substances.markdown(
         kpi(len(search_engine.get_aspect(search)["substance"]), "Substances"),
         unsafe_allow_html=True,

viz.html

@@ -50,8 +50,8 @@
         
 
         // parsing and collecting nodes and edges from the python
-        nodes = new vis.DataSet([{"color": "#4EA0DB", "font": {"color": "#ffffff"}, "id": "knee pain", "label": "knee pain", "shape": "dot", "value": 100}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "joint pain", "label": "joint pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "foot pain", "label": "foot pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "hip pain", "label": "hip pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "shoulder pain", "label": "shoulder pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "knee joint pain", "label": "knee joint pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "knee pains", "label": "knee pains", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "ankle pain", "label": "ankle pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "neck pain", "label": "neck pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "knees pain", "label": "knees pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "wrist pain", "label": "wrist pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "shoulder pains", "label": "shoulder pains", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "forearm pain", "label": "forearm pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "leg pain", "label": "leg pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "legs pain", "label": "legs pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "chest pain", "label": "chest pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "elbow pain", "label": "elbow pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "spine pain", "label": "spine pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "finger joint pain", "label": "finger joint pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "toe pain", "label": "toe pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "arm pain", "label": "arm pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "hip joint pain", "label": "hip joint pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "wrist joint pain", "label": "wrist joint pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "head pain", "label": "head pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "knee swelling", "label": "knee swelling", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "groin pain", "label": "groin pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "feet pain", "label": "feet pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "jaw pain", "label": "jaw pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "shoulders pain", "label": "shoulders pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "tendon pain", "label": "tendon pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "thigh pain", "label": "thigh pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "arms pain", "label": "arms pain", "shape": "dot", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "hip knee pain", "label": "hip knee pain", "shape": "dot", "value": 70}]);
-        edges = new vis.DataSet([{"from": "knee pain", "title": 0.9572226566398652, "to": "joint pain", "value": 0.09572226566398652, "weight": 0.9572226566398652}, {"from": "knee pain", "title": 0.9721691627688442, "to": "foot pain", "value": 0.09721691627688443, "weight": 0.9721691627688442}, {"from": "knee pain", "title": 0.9728595739961694, "to": "hip pain", "value": 0.09728595739961694, "weight": 0.9728595739961694}, {"from": "knee pain", "title": 0.9886381450225392, "to": "shoulder pain", "value": 0.09886381450225393, "weight": 0.9886381450225392}, {"from": "knee pain", "title": 0.9633261170891145, "to": "knee joint pain", "value": 0.09633261170891146, "weight": 0.9633261170891145}, {"from": "knee pain", "title": 0.9641970662920486, "to": "knee pains", "value": 0.09641970662920486, "weight": 0.9641970662920486}, {"from": "knee pain", "title": 0.9852088102259774, "to": "ankle pain", "value": 0.09852088102259775, "weight": 0.9852088102259774}, {"from": "knee pain", "title": 0.9775551384003314, "to": "neck pain", "value": 0.09775551384003314, "weight": 0.9775551384003314}, {"from": "knee pain", "title": 0.9527260826829039, "to": "knees pain", "value": 0.0952726082682904, "weight": 0.9527260826829039}, {"from": "knee pain", "title": 0.9668905460143599, "to": "wrist pain", "value": 0.096689054601436, "weight": 0.9668905460143599}, {"from": "knee pain", "title": 0.9506593292143222, "to": "shoulder pains", "value": 0.09506593292143223, "weight": 0.9506593292143222}, {"from": "knee pain", "title": 0.9694992428145469, "to": "forearm pain", "value": 0.0969499242814547, "weight": 0.9694992428145469}, {"from": "knee pain", "title": 0.980168245352133, "to": "leg pain", "value": 0.0980168245352133, "weight": 0.980168245352133}, {"from": "knee pain", "title": 0.9505274489621832, "to": "legs pain", "value": 0.09505274489621833, "weight": 0.9505274489621832}, {"from": "knee pain", "title": 0.9721296071055993, "to": "chest pain", "value": 0.09721296071055993, "weight": 0.9721296071055993}, {"from": "knee pain", "title": 0.9839312972552418, "to": "elbow pain", "value": 0.09839312972552418, "weight": 0.9839312972552418}, {"from": "knee pain", "title": 0.9584609544116655, "to": "spine pain", "value": 0.09584609544116655, "weight": 0.9584609544116655}, {"from": "knee pain", "title": 0.9519111501913806, "to": "finger joint pain", "value": 0.09519111501913807, "weight": 0.9519111501913806}, {"from": "knee pain", "title": 0.9609345812503135, "to": "toe pain", "value": 0.09609345812503135, "weight": 0.9609345812503135}, {"from": "knee pain", "title": 0.974981705771776, "to": "arm pain", "value": 0.0974981705771776, "weight": 0.974981705771776}, {"from": "knee pain", "title": 0.9537760229169574, "to": "hip joint pain", "value": 0.09537760229169574, "weight": 0.9537760229169574}, {"from": "knee pain", "title": 0.9545163508269806, "to": "wrist joint pain", "value": 0.09545163508269806, "weight": 0.9545163508269806}, {"from": "knee pain", "title": 0.958708042693945, "to": "head pain", "value": 0.09587080426939451, "weight": 0.958708042693945}, {"from": "knee pain", "title": 0.9545507396519165, "to": "knee swelling", "value": 0.09545507396519165, "weight": 0.9545507396519165}, {"from": "knee pain", "title": 0.9557324494770963, "to": "groin pain", "value": 0.09557324494770963, "weight": 0.9557324494770963}, {"from": "knee pain", "title": 0.952505866119859, "to": "feet pain", "value": 0.0952505866119859, "weight": 0.952505866119859}, {"from": "knee pain", "title": 0.9703174913222936, "to": "jaw pain", "value": 0.09703174913222937, "weight": 0.9703174913222936}, {"from": "knee pain", "title": 0.9529714904579305, "to": "shoulders pain", "value": 0.09529714904579306, "weight": 0.9529714904579305}, {"from": "knee pain", "title": 0.9576092078570831, "to": "tendon pain", "value": 0.09576092078570832, "weight": 0.9576092078570831}, {"from": "knee pain", "title": 0.9677445817935832, "to": "thigh pain", "value": 0.09677445817935833, "weight": 0.9677445817935832}, {"from": "knee pain", "title": 0.9506022576954113, "to": "arms pain", "value": 0.09506022576954114, "weight": 0.9506022576954113}, {"from": "knee pain", "title": 0.9606641167811792, "to": "hip knee pain", "value": 0.09606641167811793, "weight": 0.9606641167811792}, {"from": "joint pain", "title": 0.9244428549530791, "to": "foot pain", "value": 0.09244428549530792, "weight": 0.9244428549530791}, {"from": "joint pain", "title": 0.9550355502713094, "to": "hip pain", "value": 0.09550355502713094, "weight": 0.9550355502713094}, {"from": "joint pain", "title": 0.9410141085943581, "to": "shoulder pain", "value": 0.09410141085943581, "weight": 0.9410141085943581}, {"from": "joint pain", "title": 0.9483466241569839, "to": "knee joint pain", "value": 0.09483466241569839, "weight": 0.9483466241569839}, {"from": "joint pain", "title": 0.9018196317633977, "to": "knee pains", "value": 0.09018196317633978, "weight": 0.9018196317633977}, {"from": "joint pain", "title": 0.9255280047665597, "to": "ankle pain", "value": 0.09255280047665598, "weight": 0.9255280047665597}, {"from": "joint pain", "title": 0.9343239075808237, "to": "neck pain", "value": 0.09343239075808238, "weight": 0.9343239075808237}, {"from": "joint pain", "title": 0.8790642776719283, "to": "knees pain", "value": 0.08790642776719283, "weight": 0.8790642776719283}, {"from": "joint pain", "title": 0.9004978597329176, "to": "wrist pain", "value": 0.09004978597329177, "weight": 0.9004978597329176}, {"from": "joint pain", "title": 0.8838578611724158, "to": "shoulder pains", "value": 0.08838578611724159, "weight": 0.8838578611724158}, {"from": "joint pain", "title": 0.9216961499753696, "to": "forearm pain", "value": 0.09216961499753697, "weight": 0.9216961499753696}, {"from": "joint pain", "title": 0.9378619158732041, "to": "leg pain", "value": 0.09378619158732042, "weight": 0.9378619158732041}, {"from": "joint pain", "title": 0.8798352710030111, "to": "legs pain", "value": 0.0879835271003011, "weight": 0.8798352710030111}, {"from": "joint pain", "title": 0.9268068797624519, "to": "chest pain", "value": 0.0926806879762452, "weight": 0.9268068797624519}, {"from": "joint pain", "title": 0.9421524468267243, "to": "elbow pain", "value": 0.09421524468267244, "weight": 0.9421524468267243}, {"from": "joint pain", "title": 0.9352659055908789, "to": "spine pain", "value": 0.0935265905590879, "weight": 0.9352659055908789}, {"from": "joint pain", "title": 0.9198614060170138, "to": "finger joint pain", "value": 0.09198614060170139, "weight": 0.9198614060170138}, {"from": "joint pain", "title": 0.9013564915153371, "to": "toe pain", "value": 0.09013564915153371, "weight": 0.9013564915153371}, {"from": "joint pain", "title": 0.9275325362246755, "to": "arm pain", "value": 0.09275325362246756, "weight": 0.9275325362246755}, {"from": "joint pain", "title": 0.9549502924292922, "to": "hip joint pain", "value": 0.09549502924292923, "weight": 0.9549502924292922}, {"from": 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"title": 0.9745235599403325, "to": "arms pain", "value": 0.09745235599403325, "weight": 0.9745235599403325}, {"from": "arm pain", "title": 0.9397889139254791, "to": "hip knee pain", "value": 0.09397889139254792, "weight": 0.9397889139254791}, {"from": "hip joint pain", "title": 0.975403044366746, "to": "wrist joint pain", "value": 0.09754030443667461, "weight": 0.975403044366746}, {"from": "hip joint pain", "title": 0.9174803061183111, "to": "head pain", "value": 0.09174803061183112, "weight": 0.9174803061183111}, {"from": "hip joint pain", "title": 0.898735209440803, "to": "knee swelling", "value": 0.0898735209440803, "weight": 0.898735209440803}, {"from": "hip joint pain", "title": 0.8949356341898442, "to": "groin pain", "value": 0.08949356341898443, "weight": 0.8949356341898442}, {"from": "hip joint pain", "title": 0.9009994050977063, "to": "feet pain", "value": 0.09009994050977063, "weight": 0.9009994050977063}, {"from": "hip joint pain", "title": 0.9260270896114028, "to": "jaw pain", "value": 0.09260270896114028, "weight": 0.9260270896114028}, {"from": "hip joint pain", "title": 0.9012019456271443, "to": "shoulders pain", "value": 0.09012019456271443, "weight": 0.9012019456271443}, {"from": "hip joint pain", "title": 0.9209138879952431, "to": "tendon pain", "value": 0.09209138879952432, "weight": 0.9209138879952431}, {"from": "hip joint pain", "title": 0.9160432620354679, "to": "thigh pain", "value": 0.0916043262035468, "weight": 0.9160432620354679}, {"from": "hip joint pain", "title": 0.9059305159142848, "to": "arms pain", "value": 0.09059305159142848, "weight": 0.9059305159142848}, {"from": "hip joint pain", "title": 0.9788085583761802, "to": "hip knee pain", "value": 0.09788085583761802, "weight": 0.9788085583761802}, {"from": "wrist joint pain", "title": 0.9232190651633249, "to": "head pain", "value": 0.09232190651633249, "weight": 0.9232190651633249}, {"from": "wrist joint pain", "title": 0.9179992127705088, "to": "knee swelling", "value": 0.09179992127705089, "weight": 0.9179992127705088}, {"from": "wrist joint pain", "title": 0.9163701082410606, "to": "groin pain", "value": 0.09163701082410607, "weight": 0.9163701082410606}, {"from": "wrist joint pain", "title": 0.9140627064806931, "to": "feet pain", "value": 0.09140627064806932, "weight": 0.9140627064806931}, {"from": "wrist joint pain", "title": 0.9329386933336306, "to": "jaw pain", "value": 0.09329386933336306, "weight": 0.9329386933336306}, {"from": "wrist joint pain", "title": 0.9294229218220781, "to": "shoulders pain", "value": 0.09294229218220781, "weight": 0.9294229218220781}, {"from": "wrist joint pain", "title": 0.9242005782101511, "to": "tendon pain", "value": 0.09242005782101512, "weight": 0.9242005782101511}, {"from": "wrist joint pain", "title": 0.9305669362640886, "to": "thigh pain", "value": 0.09305669362640887, "weight": 0.9305669362640886}, {"from": "wrist joint pain", "title": 0.9247215119278157, "to": "arms pain", "value": 0.09247215119278157, "weight": 0.9247215119278157}, {"from": "wrist joint pain", "title": 0.969544827411184, "to": "hip knee pain", "value": 0.0969544827411184, "weight": 0.969544827411184}, {"from": "head pain", "title": 0.925762666787428, "to": "knee swelling", "value": 0.0925762666787428, "weight": 0.925762666787428}, {"from": "head pain", "title": 0.9326147386252409, "to": "groin pain", "value": 0.09326147386252409, "weight": 0.9326147386252409}, {"from": "head pain", "title": 0.9714580212831693, "to": "feet pain", "value": 0.09714580212831693, "weight": 0.9714580212831693}, {"from": "head pain", "title": 0.948825495926433, "to": "jaw pain", "value": 0.0948825495926433, "weight": 0.948825495926433}, {"from": "head pain", "title": 0.9538299585484309, "to": "shoulders pain", "value": 0.0953829958548431, "weight": 0.9538299585484309}, {"from": "head pain", "title": 0.9066665562431412, "to": "tendon pain", "value": 0.09066665562431413, "weight": 0.9066665562431412}, {"from": "head pain", "title": 0.959254163495362, "to": "thigh pain", "value": 0.0959254163495362, "weight": 0.959254163495362}, {"from": "head pain", "title": 0.9650203694005541, "to": "arms pain", "value": 0.09650203694005542, "weight": 0.9650203694005541}, {"from": "head pain", "title": 0.9316878164798293, "to": "hip knee pain", "value": 0.09316878164798294, "weight": 0.9316878164798293}, {"from": "knee swelling", "title": 0.960772039462287, "to": "groin pain", "value": 0.0960772039462287, "weight": 0.960772039462287}, {"from": "knee swelling", "title": 0.9359790556700366, "to": "feet pain", "value": 0.09359790556700366, "weight": 0.9359790556700366}, {"from": "knee swelling", "title": 0.9583938878994327, "to": "jaw pain", "value": 0.09583938878994328, "weight": 0.9583938878994327}, {"from": "knee swelling", "title": 0.9416939959206934, "to": "shoulders pain", "value": 0.09416939959206934, "weight": 0.9416939959206934}, {"from": "knee swelling", "title": 0.9543762219896589, "to": "tendon pain", "value": 0.0954376221989659, "weight": 0.9543762219896589}, {"from": "knee swelling", "title": 0.9571425891575845, "to": "thigh pain", "value": 0.09571425891575847, "weight": 0.9571425891575845}, {"from": "knee swelling", "title": 0.9230003691814664, "to": "arms pain", "value": 0.09230003691814664, "weight": 0.9230003691814664}, {"from": "knee swelling", "title": 0.9198750022058412, "to": "hip knee pain", "value": 0.09198750022058412, "weight": 0.9198750022058412}, {"from": "groin pain", "title": 0.9363650965275252, "to": "feet pain", "value": 0.09363650965275253, "weight": 0.9363650965275252}, {"from": "groin pain", "title": 0.9686741334016451, "to": "jaw pain", "value": 0.09686741334016452, "weight": 0.9686741334016451}, {"from": "groin pain", "title": 0.9535469616775607, "to": "shoulders pain", "value": 0.09535469616775608, "weight": 0.9535469616775607}, {"from": "groin pain", "title": 0.964262008992617, "to": "tendon pain", "value": 0.09642620089926171, "weight": 0.964262008992617}, {"from": "groin pain", "title": 0.9614573061171406, "to": "thigh pain", "value": 0.09614573061171407, "weight": 0.9614573061171406}, {"from": "groin pain", "title": 0.9375178019417711, "to": "arms pain", "value": 0.09375178019417713, "weight": 0.9375178019417711}, {"from": "groin pain", "title": 0.9073609398462658, "to": "hip knee pain", "value": 0.09073609398462658, "weight": 0.9073609398462658}, {"from": "feet pain", "title": 0.9534521763823094, "to": "jaw pain", "value": 0.09534521763823095, "weight": 0.9534521763823094}, {"from": "feet pain", "title": 0.9759812517109504, "to": "shoulders pain", "value": 0.09759812517109505, "weight": 0.9759812517109504}, {"from": "feet pain", "title": 0.9120624602298233, "to": "tendon pain", "value": 0.09120624602298233, "weight": 0.9120624602298233}, {"from": "feet pain", "title": 0.9685993729758723, "to": "thigh pain", "value": 0.09685993729758724, "weight": 0.9685993729758723}, {"from": "feet pain", "title": 0.9715718637795933, "to": "arms pain", "value": 0.09715718637795934, "weight": 0.9715718637795933}, {"from": "feet pain", "title": 0.9264393778823535, "to": "hip knee pain", "value": 0.09264393778823536, "weight": 0.9264393778823535}, {"from": "jaw pain", "title": 0.9620287526454034, "to": "shoulders pain", "value": 0.09620287526454036, "weight": 0.9620287526454034}, {"from": "jaw pain", "title": 0.9545056919000106, "to": "tendon pain", "value": 0.09545056919000106, "weight": 0.9545056919000106}, {"from": "jaw pain", "title": 0.9844125181054957, "to": "thigh pain", "value": 0.09844125181054958, "weight": 0.9844125181054957}, {"from": "jaw pain", "title": 0.9506915617940241, "to": "arms pain", "value": 0.09506915617940243, "weight": 0.9506915617940241}, {"from": "jaw pain", "title": 0.932431097878032, "to": "hip knee pain", "value": 0.0932431097878032, "weight": 0.932431097878032}, {"from": "shoulders pain", "title": 0.9241639645719679, "to": "tendon pain", "value": 0.09241639645719679, "weight": 0.9241639645719679}, {"from": "shoulders pain", "title": 0.9713357046694795, "to": "thigh pain", "value": 0.09713357046694795, "weight": 0.9713357046694795}, {"from": "shoulders pain", "title": 0.9805045681377641, "to": "arms pain", "value": 0.09805045681377642, "weight": 0.9805045681377641}, {"from": "shoulders pain", "title": 0.9181777118608274, "to": "hip knee pain", "value": 0.09181777118608275, "weight": 0.9181777118608274}, {"from": "tendon pain", "title": 0.9505336166078583, "to": "thigh pain", "value": 0.09505336166078583, "weight": 0.9505336166078583}, {"from": "tendon pain", "title": 0.9077130939253991, "to": "arms pain", "value": 0.09077130939253991, "weight": 0.9077130939253991}, {"from": "tendon pain", "title": 0.9168505313812962, "to": "hip knee pain", "value": 0.09168505313812964, "weight": 0.9168505313812962}, {"from": "thigh pain", "title": 0.9608993960486444, "to": "arms pain", "value": 0.09608993960486445, "weight": 0.9608993960486444}, {"from": "thigh pain", "title": 0.9372469971999133, "to": "hip knee pain", "value": 0.09372469971999134, "weight": 0.9372469971999133}, {"from": "arms pain", "title": 0.9213338932213619, "to": "hip knee pain", "value": 0.0921333893221362, "weight": 0.9213338932213619}]);
+        nodes = new vis.DataSet([{"color": "#4EA0DB", "font": {"color": "#ffffff"}, "id": "joint pain", "label": "joint pain", "shape": "circle", "value": 100}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "knee pain", "label": "knee pain", "shape": "circle", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "joint pains", "label": "joint pains", "shape": "circle", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "hip pain", "label": "hip pain", "shape": "circle", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "joint swelling", "label": "joint swelling", "shape": "circle", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "joint spasms", "label": "joint spasms", "shape": "circle", "value": 70}, {"color": "#FE51B9", "font": {"color": "#ffffff"}, "id": "hip joint pain", "label": "hip joint pain", "shape": "circle", "value": 70}]);
+        edges = new vis.DataSet([{"from": "joint pain", "title": 0.9572226566398657, "to": "knee pain", "value": 0.9572226566398657, "weight": 0.9572226566398657}, {"from": "joint pain", "title": 0.9625375209664775, "to": "joint pains", "value": 0.9625375209664775, "weight": 0.9625375209664775}, {"from": "joint pain", "title": 0.95503555027131, "to": "hip pain", "value": 0.95503555027131, "weight": 0.95503555027131}, {"from": "joint pain", "title": 0.9502244303109445, "to": "joint swelling", "value": 0.9502244303109445, "weight": 0.9502244303109445}, {"from": "joint pain", "title": 0.9501415183125163, "to": "joint spasms", "value": 0.9501415183125163, "weight": 0.9501415183125163}, {"from": "joint pain", "title": 0.954950292429293, "to": "hip joint pain", "value": 0.954950292429293, "weight": 0.954950292429293}, {"from": "knee pain", "title": 0.9418004072308424, "to": "joint pains", "value": 0.4709002036154212, "weight": 0.9418004072308424}, {"from": "knee pain", "title": 0.9728595739961697, "to": "hip pain", "value": 0.48642978699808487, "weight": 0.9728595739961697}, {"from": "knee pain", "title": 0.9295580615322443, "to": "joint swelling", "value": 0.46477903076612215, "weight": 0.9295580615322443}, {"from": "knee pain", "title": 0.9360705784202505, "to": "joint spasms", "value": 0.46803528921012527, "weight": 0.9360705784202505}, {"from": "knee pain", "title": 0.9537760229169578, "to": "hip joint pain", "value": 0.4768880114584789, "weight": 0.9537760229169578}, {"from": "joint pains", "title": 0.9267684505176702, "to": "hip pain", "value": 0.4633842252588351, "weight": 0.9267684505176702}, {"from": "joint pains", "title": 0.949263384012155, "to": "joint swelling", "value": 0.4746316920060775, "weight": 0.949263384012155}, {"from": "joint pains", "title": 0.9767091604713536, "to": "joint spasms", "value": 0.4883545802356768, "weight": 0.9767091604713536}, {"from": "joint pains", "title": 0.9271664961331827, "to": "hip joint pain", "value": 0.46358324806659135, "weight": 0.9271664961331827}, {"from": "hip pain", "title": 0.9171146529864702, "to": "joint swelling", "value": 0.4585573264932351, "weight": 0.9171146529864702}, {"from": "hip pain", "title": 0.9164231845869644, "to": "joint spasms", "value": 0.4582115922934822, "weight": 0.9164231845869644}, {"from": "hip pain", "title": 0.9591815632838274, "to": "hip joint pain", "value": 0.4795907816419137, "weight": 0.9591815632838274}, {"from": "joint swelling", "title": 0.9714236421275902, "to": "joint spasms", "value": 0.4857118210637951, "weight": 0.9714236421275902}, {"from": "joint swelling", "title": 0.9166539186706262, "to": "hip joint pain", "value": 0.4583269593353131, "weight": 0.9166539186706262}, {"from": "joint spasms", "title": 0.9179037086580787, "to": "hip joint pain", "value": 0.45895185432903934, "weight": 0.9179037086580787}]);
 
         // adding nodes and edges to the graph
         data = {nodes: nodes, edges: edges};
@@ -65,8 +65,8 @@
             "inherit": true
         },
         "smooth": {
-            "enabled": false,
-            "type": "continuous"
+            "enabled": true,
+            "type": "dynamic"
         }
     },
     "interaction": {
@@ -77,15 +77,15 @@
     "physics": {
         "barnesHut": {
             "avoidOverlap": 0,
-            "centralGravity": 0.8,
+            "centralGravity": 0.3,
             "damping": 0.09,
-            "gravitationalConstant": -80000,
+            "gravitationalConstant": -2500,
             "springConstant": 0.001,
-            "springLength": 100
+            "springLength": 250
         },
         "enabled": true,
         "stabilization": {
-            "enabled": true,
+            "enabled": false,
             "fit": true,
             "iterations": 1000,
             "onlyDynamicEdges": false,