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Browse files- app.py +93 -91
- constants.py +6 -0
- evaluation_metrics.py +1 -1
app.py
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import pandas as pd
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import streamlit as st
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from annotated_text.util import get_annotated_html
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from streamlit_annotation_tools import text_labeler
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from evaluation_metrics import EVALUATION_METRICS
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from predefined_example import EXAMPLES
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from span_dataclass_converters import (
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if __name__ == "__main__":
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st.set_page_config(layout="wide")
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st.title("NER Metrics Comparison")
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st.write(
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"Evaluation for the NER task requires a ground truth and a prediction that will be evaluated. The ground truth is shown below, add predictions in the next section to compare the evaluation metrics."
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)
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format_func=lambda ex: ex.text,
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)
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get_ner_spans_from_annotations(gt_labels), text
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)
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)
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st.write(
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#
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)
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st.write(highlighted_predictions_df.to_html(escape=False), unsafe_allow_html=True)
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st.divider()
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### EVALUATION METRICS COMPARISION ###
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st.subheader("Evaluation Metrics Comparision") # , divider='rainbow')
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st.markdown("""
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The different evaluation metrics we have for the NER task are
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- Span Based Evaluation with Partial Overlap
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- Token Based Evaluation with Micro Avg
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- Token Based Evaluation with Macro Avg
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""")
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with st.expander("View Predictions Details"):
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st.write(predictions_df.to_html(escape=False), unsafe_allow_html=True)
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if st.button("Get Metrics!"):
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for evaluation_metric in EVALUATION_METRICS:
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predictions_df[evaluation_metric.name] = predictions_df.ner_spans.apply(
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lambda ner_spans: evaluation_metric.get_evaluation_metric(
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# metric_type=evaluation_metric_type,
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gt_ner_span=gt_spans,
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pred_ner_span=ner_spans,
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text=text,
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tags=tags,
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)
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import pandas as pd
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import streamlit as st
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# from annotated_text import annotated_text
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from annotated_text.util import get_annotated_html
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from streamlit_annotation_tools import text_labeler
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from constants import PREDICTION_ADDITION_INSTRUCTION
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from evaluation_metrics import EVALUATION_METRICS
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from predefined_example import EXAMPLES
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from span_dataclass_converters import (
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if __name__ == "__main__":
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st.set_page_config(layout="wide")
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st.title("📈 NER Metrics Comparison ⚖️")
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st.write(
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"Evaluation for the NER task requires a ground truth and a prediction that will be evaluated. The ground truth is shown below, add predictions in the next section to compare the evaluation metrics."
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)
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explanation_tab, comparision_tab = st.tabs(["📙 Explanation", "⚖️ Comparision"])
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with explanation_tab:
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st.write("This is the place holder for explanation of all the metrics")
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with comparision_tab:
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# with st.container():
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st.subheader("Ground Truth & Predictions") # , divider='rainbow')
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selected_example = st.selectbox(
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"Select an example text from the drop down below",
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[example for example in EXAMPLES],
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format_func=lambda ex: ex.text,
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)
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text, gt_labels, gt_spans, predictions, tags = get_examples_attributes(
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selected_example
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# annotated_text(
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# get_highlight_spans_from_ner_spans(
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# get_ner_spans_from_annotations(gt_labels), text
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# )
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# )
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annotated_predictions = [
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get_annotated_html(get_highlight_spans_from_ner_spans(ner_span, text))
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for ner_span in predictions
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]
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predictions_df = pd.DataFrame(
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{
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# "ID": [f"Prediction_{index}" for index in range(len(predictions))],
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"Prediction": annotated_predictions,
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"ner_spans": predictions,
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},
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index=["Ground Truth"]
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+ [f"Prediction_{index}" for index in range(len(predictions) - 1)],
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)
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# st.subheader("Predictions") # , divider='rainbow')
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with st.expander("Click to Add Predictions"):
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st.subheader("Adding predictions")
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st.markdown(PREDICTION_ADDITION_INSTRUCTION)
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st.write(
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"Note: Only the spans of the selected label name is shown at a given instance.",
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)
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labels = text_labeler(text, gt_labels)
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st.json(labels, expanded=False)
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# if st.button("Add Prediction"):
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# labels = text_labeler(text)
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if st.button("Add!"):
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spans = get_ner_spans_from_annotations(labels)
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spans = sorted(spans, key=lambda span: span["start"])
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predictions.append(spans)
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annotated_predictions.append(
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get_annotated_html(get_highlight_spans_from_ner_spans(spans, text))
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)
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predictions_df = pd.DataFrame(
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{
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# "ID": [f"Prediction_{index}" for index in range(len(predictions))],
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"Prediction": annotated_predictions,
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"ner_spans": predictions,
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},
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index=["Ground Truth"]
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+ [f"Prediction_{index}" for index in range(len(predictions) - 1)],
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)
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print("added")
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highlighted_predictions_df = predictions_df[["Prediction"]]
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st.write(
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highlighted_predictions_df.to_html(escape=False), unsafe_allow_html=True
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)
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st.divider()
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### EVALUATION METRICS COMPARISION ###
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st.subheader("Evaluation Metrics Comparision") # , divider='rainbow')
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st.markdown(
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"The different evaluation metrics we have for the NER task are\n"
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f"{''.join(['- '+evaluation_metric.name+'\n' for evaluation_metric in EVALUATION_METRICS])}"
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)
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with st.expander("View Predictions Details"):
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st.write(predictions_df.to_html(escape=False), unsafe_allow_html=True)
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if st.button("Get Metrics!"):
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for evaluation_metric in EVALUATION_METRICS:
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predictions_df[evaluation_metric.name] = predictions_df.ner_spans.apply(
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lambda ner_spans: evaluation_metric.get_evaluation_metric(
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# metric_type=evaluation_metric_type,
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gt_ner_span=gt_spans,
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pred_ner_span=ner_spans,
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text=text,
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tags=tags,
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)
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)
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metrics_df = predictions_df.drop(["ner_spans"], axis=1)
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st.write(metrics_df.to_html(escape=False), unsafe_allow_html=True)
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constants.py
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PREDICTION_ADDITION_INSTRUCTION = """
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Add predictions to the list of predictions on which the evaluation metric will be caculated.
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- Select the entity type/label name and then highlight the span in the text below.
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- To remove a span, double click on the higlighted text.
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- Once you have your desired prediction, click on the 'Add' button.(The prediction created is shown in a json below)
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"""
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evaluation_metrics.py
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@@ -47,7 +47,7 @@ class TokenMicroMetric(EvaluationMetric):
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def __init__(self) -> None:
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super().__init__()
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self.name = "
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self.description = ""
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@staticmethod
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def __init__(self) -> None:
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super().__init__()
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self.name = "Token Based Evaluation with Micro Average"
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self.description = ""
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@staticmethod
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