PQAref / README.md
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metadata
license: agpl-3.0
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*
      - split: val
        path: data/val-*
      - split: test
        path: data/test-*
dataset_info:
  features:
    - name: input
      dtype: string
  splits:
    - name: train
      num_bytes: 136602851.95652175
      num_examples: 7260
    - name: val
      num_bytes: 17065948.584650856
      num_examples: 907
    - name: test
      num_bytes: 17084764.40447958
      num_examples: 908
  download_size: 82888007
  dataset_size: 170753564.9456522
task_categories:
  - text-generation
  - question-answering
  - summarization
language:
  - en
tags:
  - biology
  - biomedicine
pretty_name: PubMed Referenced Question Answering Dataset
size_categories:
  - 10M<n<100M

Dataset description

The PQAref dataset is a dataset for fine-tuning large language models for referenced question-answering in biomedical domain.

The dataset contains 3 components:

  • Instruction - question that is supposed to be answered
  • Abstracts - set of 10 relevant abstracts retrieved from PubMed by an IR system. They contain the PubMed id, abstract title and the content of the abstract
  • Answer - expected answer, with references in the form of PubMed IDs.

The dataset was created semi-automatically, utilizing questions available from PubMedQA dataset.

arXiv paper

https://arxiv.org/abs/2407.05015