metadata
configs:
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_24
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_24/data-00000-of-00001.arrow
split: train
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_256
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_256/data-00000-of-00001.arrow
split: train
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_512
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_512/data-00000-of-00001.arrow
split: train
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_1024
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_1024/data-00000-of-00001.arrow
split: train
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_2048
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_2048/data-00000-of-00001.arrow
split: train
- config_name: Bacillus_subtilis_subsp._subtilis_str._168_4096
data_files:
- path: >-
Bacillus_subtilis_subsp._subtilis_str._168_4096/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_24
data_files:
- path: Escherichia_coli_str._K-12_substr._MG1655_24/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_256
data_files:
- path: >-
Escherichia_coli_str._K-12_substr._MG1655_256/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_512
data_files:
- path: >-
Escherichia_coli_str._K-12_substr._MG1655_512/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_1024
data_files:
- path: >-
Escherichia_coli_str._K-12_substr._MG1655_1024/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_2048
data_files:
- path: >-
Escherichia_coli_str._K-12_substr._MG1655_2048/data-00000-of-00001.arrow
split: train
- config_name: Escherichia_coli_str._K-12_substr._MG1655_4096
data_files:
- path: >-
Escherichia_coli_str._K-12_substr._MG1655_4096/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_24
data_files:
- path: Helicobacter_pylori_strain_26695_24/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_256
data_files:
- path: Helicobacter_pylori_strain_26695_256/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_512
data_files:
- path: Helicobacter_pylori_strain_26695_512/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_1024
data_files:
- path: Helicobacter_pylori_strain_26695_1024/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_2048
data_files:
- path: Helicobacter_pylori_strain_26695_2048/data-00000-of-00001.arrow
split: train
- config_name: Helicobacter_pylori_strain_26695_4096
data_files:
- path: Helicobacter_pylori_strain_26695_4096/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_24
data_files:
- path: Listeria_monocytogenes_str._EGD-e_24/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_256
data_files:
- path: Listeria_monocytogenes_str._EGD-e_256/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_512
data_files:
- path: Listeria_monocytogenes_str._EGD-e_512/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_1024
data_files:
- path: Listeria_monocytogenes_str._EGD-e_1024/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_2048
data_files:
- path: Listeria_monocytogenes_str._EGD-e_2048/data-00000-of-00001.arrow
split: train
- config_name: Listeria_monocytogenes_str._EGD-e_4096
data_files:
- path: Listeria_monocytogenes_str._EGD-e_4096/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_24
data_files:
- path: Pseudomonas_aeruginosa_PAO1_24/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_256
data_files:
- path: Pseudomonas_aeruginosa_PAO1_256/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_512
data_files:
- path: Pseudomonas_aeruginosa_PAO1_512/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_1024
data_files:
- path: Pseudomonas_aeruginosa_PAO1_1024/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_2048
data_files:
- path: Pseudomonas_aeruginosa_PAO1_2048/data-00000-of-00001.arrow
split: train
- config_name: Pseudomonas_aeruginosa_PAO1_4096
data_files:
- path: Pseudomonas_aeruginosa_PAO1_4096/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_24
data_files:
- path: Streptomyces_pristinaespiralis_24/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_256
data_files:
- path: Streptomyces_pristinaespiralis_256/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_512
data_files:
- path: Streptomyces_pristinaespiralis_512/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_1024
data_files:
- path: Streptomyces_pristinaespiralis_1024/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_2048
data_files:
- path: Streptomyces_pristinaespiralis_2048/data-00000-of-00001.arrow
split: train
- config_name: Streptomyces_pristinaespiralis_4096
data_files:
- path: Streptomyces_pristinaespiralis_4096/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_24
data_files:
- path: Synechocystis_sp._strain_PCC_6803_24/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_256
data_files:
- path: Synechocystis_sp._strain_PCC_6803_256/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_512
data_files:
- path: Synechocystis_sp._strain_PCC_6803_512/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_1024
data_files:
- path: Synechocystis_sp._strain_PCC_6803_1024/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_2048
data_files:
- path: Synechocystis_sp._strain_PCC_6803_2048/data-00000-of-00001.arrow
split: train
- config_name: Synechocystis_sp._strain_PCC_6803_4096
data_files:
- path: Synechocystis_sp._strain_PCC_6803_4096/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_24
data_files:
- path: Thermotoga_maritima_strain_MSB8_24/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_256
data_files:
- path: Thermotoga_maritima_strain_MSB8_256/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_512
data_files:
- path: Thermotoga_maritima_strain_MSB8_512/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_1024
data_files:
- path: Thermotoga_maritima_strain_MSB8_1024/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_2048
data_files:
- path: Thermotoga_maritima_strain_MSB8_2048/data-00000-of-00001.arrow
split: train
- config_name: Thermotoga_maritima_strain_MSB8_4096
data_files:
- path: Thermotoga_maritima_strain_MSB8_4096/data-00000-of-00001.arrow
split: train
Dataset Organization
The Prodoric Regulatory dataset is organized by species and context length. Each species has multiple subsets corresponding to different context lengths.
Instructions to Download
You can load a dataset using HF's API, with an example below.
from datasets import load_dataset
prodoric_data = load_dataset("wanglab/prodoric_regulatory", 'Bacillus_subtilis_subsp._subtilis_str._168_1024')
# Access the train data for a specific context length
train_data = prodoric_data['train']