nominal-groups-recognition-medical-disease-competencia2-bert-medical-ner

This model is a fine-tuned version of ukkendane/bert-medical-ner on the None dataset. It achieves the following results on the evaluation set:

• Loss: 0.3607
• Body Part Precision: 0.6555
• Body Part Recall: 0.7094
• Body Part F1: 0.6814
• Body Part Number: 413
• Disease Precision: 0.6835
• Disease Recall: 0.7067
• Disease F1: 0.6949
• Disease Number: 975
• Family Member Precision: 1.0
• Family Member Recall: 0.6
• Family Member F1: 0.7500
• Family Member Number: 30
• Medication Precision: 0.7647
• Medication Recall: 0.6989
• Medication F1: 0.7303
• Medication Number: 93
• Procedure Precision: 0.5385
• Procedure Recall: 0.5402
• Procedure F1: 0.5393
• Procedure Number: 311
• Overall Precision: 0.6594
• Overall Recall: 0.6767
• Overall F1: 0.6679
• Overall Accuracy: 0.9079

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

• learning_rate: 2e-05
• train_batch_size: 8
• eval_batch_size: 8
• seed: 13
• optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
• lr_scheduler_type: linear
• num_epochs: 5

Training results

Training Loss	Epoch	Step	Validation Loss	Body Part Precision	Body Part Recall	Body Part F1	Body Part Number	Disease Precision	Disease Recall	Disease F1	Disease Number	Family Member Precision	Family Member Recall	Family Member F1	Family Member Number	Medication Precision	Medication Recall	Medication F1	Medication Number	Procedure Precision	Procedure Recall	Procedure F1	Procedure Number	Overall Precision	Overall Recall	Overall F1	Overall Accuracy
0.4541	1.0	8025	0.3607	0.6555	0.7094	0.6814	413	0.6835	0.7067	0.6949	975	1.0	0.6	0.7500	30	0.7647	0.6989	0.7303	93	0.5385	0.5402	0.5393	311	0.6594	0.6767	0.6679	0.9079
0.3149	2.0	16050	0.3607	0.6555	0.7094	0.6814	413	0.6835	0.7067	0.6949	975	1.0	0.6	0.7500	30	0.7647	0.6989	0.7303	93	0.5385	0.5402	0.5393	311	0.6594	0.6767	0.6679	0.9079
0.3161	3.0	24075	0.3607	0.6555	0.7094	0.6814	413	0.6835	0.7067	0.6949	975	1.0	0.6	0.7500	30	0.7647	0.6989	0.7303	93	0.5385	0.5402	0.5393	311	0.6594	0.6767	0.6679	0.9079
0.3181	4.0	32100	0.3607	0.6555	0.7094	0.6814	413	0.6835	0.7067	0.6949	975	1.0	0.6	0.7500	30	0.7647	0.6989	0.7303	93	0.5385	0.5402	0.5393	311	0.6594	0.6767	0.6679	0.9079
0.3164	5.0	40125	0.3607	0.6555	0.7094	0.6814	413	0.6835	0.7067	0.6949	975	1.0	0.6	0.7500	30	0.7647	0.6989	0.7303	93	0.5385	0.5402	0.5393	311	0.6594	0.6767	0.6679	0.9079

Framework versions

• Transformers 4.30.2
• Pytorch 2.0.1+cu117
• Datasets 2.13.1
• Tokenizers 0.13.3