| license: cc-by-4.0 | |
| library_name: scvi-tools | |
| tags: | |
| - biology | |
| - genomics | |
| - single-cell | |
| - model_cls_name:CondSCVI | |
| - scvi_version:0.20.0b1 | |
| - anndata_version:0.10.3 | |
| - modality:rna | |
| - tissue:Trachea | |
| - annotated:True | |
| # Description | |
| To be added... | |
| # Model properties | |
| Many model properties are in the model tags. Some more are listed below. | |
| **model_init_params**: | |
| ```json | |
| { | |
| "n_hidden": 128, | |
| "n_latent": 5, | |
| "n_layers": 2, | |
| "weight_obs": false, | |
| "dropout_rate": 0.05 | |
| } | |
| ``` | |
| **model_setup_anndata_args**: | |
| ```json | |
| { | |
| "labels_key": "cell_ontology_class", | |
| "layer": null | |
| } | |
| ``` | |
| **model_summary_stats**: | |
| | Summary Stat Key | Value | | |
| |------------------|-------| | |
| | n_cells | 5112 | | |
| | n_labels | 18 | | |
| | n_vars | 4000 | | |
| **model_data_registry**: | |
| | Registry Key | scvi-tools Location | | |
| |--------------|---------------------------| | |
| | X | adata.X | | |
| | labels | adata.obs['_scvi_labels'] | | |
| **model_parent_module**: scvi.model | |
| **data_is_minified**: False | |
| # Training data | |
| This is an optional link to where the training data is stored if it is too large | |
| to host on the huggingface Model hub. | |
| <!-- If your model is not uploaded with any data (e.g., minified data) on the Model Hub, then make | |
| sure to provide this field if you want users to be able to access your training data. See the scvi-tools | |
| documentation for details. --> | |
| Training data url: N/A | |
| # Training code | |
| This is an optional link to the code used to train the model. | |
| Training code url: N/A | |
| # References | |
| To be added... |