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Christina Theodoris

ctheodoris
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Recent Activity

new activity 4 days ago
ctheodoris/Geneformer:Classifier stuck on validate
new activity 5 days ago
ctheodoris/Geneformer:get_state_embs <cls> token missing in token dictionary
new activity 6 days ago
ctheodoris/Geneformer:how to load fine_tuned_models/gf-12L-95M-i4096_MTLCellClassifier_CELLxGENE_240522
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ctheodoris's activity

New activity in ctheodoris/Geneformer 4 days ago

Classifier stuck on validate

1
#500 opened 4 days ago by
sanderssm
New activity in ctheodoris/Geneformer 5 days ago

get_state_embs <cls> token missing in token dictionary

1
#499 opened 5 days ago by
Yuxi113
New activity in ctheodoris/Geneformer 6 days ago

how to load fine_tuned_models/gf-12L-95M-i4096_MTLCellClassifier_CELLxGENE_240522

1
#498 opened 6 days ago by
vtrifonov

In silico reprogramming - Enquiry on availability of this code

1
#497 opened 6 days ago by
vivekksingh

Model fine-tuning results problem

1
#496 opened 6 days ago by
HJY12138
New activity in ctheodoris/Geneformer 9 days ago

Cardiomyocyte Dataset Pre-Processing

2
#495 opened 9 days ago by
ro2h5

Choosing of Geneformer-predicted targets for wet lab experiments

2
#494 opened 9 days ago by
ro2h5
New activity in ctheodoris/Geneformer 12 days ago

About low precision model and data possibility

1
#493 opened 12 days ago by
Looong
New activity in ctheodoris/Geneformer 13 days ago

MTL classifier Perturbation emb mode

1
#492 opened 17 days ago by
saranyabalachandran
New activity in ctheodoris/Geneformer 18 days ago

Label mapping for using fine tuned model with in silico perturber?

2
#491 opened 20 days ago by
ag2022
New activity in ctheodoris/Geneformer 19 days ago

Had a question about the classifier and the metadata you mentioned attr_to_balance set to ["disease","lvef","age","sex","length"]

1
#490 opened 21 days ago by
fhfhede
New activity in ctheodoris/Geneformer 23 days ago

Splitting dataset

6
#487 opened 27 days ago by
ZYSK-huggingface

30m Model Only Output 18360 Gene Embeddings Instead of 25424

1
#489 opened 23 days ago by
parkjosh523
New activity in ctheodoris/Geneformer 24 days ago

Inquiry About PEFT Compatibility Issue

3
#466 opened 2 months ago by
zzzk123
New activity in ctheodoris/Geneformer 25 days ago

Getting an error while using extract_embs to extract geneformer embeddings

6
#488 opened 25 days ago by
GalenP

Replicating results for Figure 6

15
#246 opened over 1 year ago by
MinieRosie
New activity in ctheodoris/Geneformer 27 days ago

median computation : gene_median_dictionary_gc95M

3
#486 opened about 1 month ago by
shakeel604
New activity in ctheodoris/Geneformer about 1 month ago

Different N_Detections for OE or deletion of same gene with same dataset

2
#485 opened about 1 month ago by
ag2022

Getting an runtime error when trying to predict of mismached shapes

1
#484 opened about 1 month ago by
GalenP

Prepare data cell level pass cell state dict instead of genes
#483 opened about 1 month ago by
hchen725